jgi.p|Nanoce1779_2|609145, mRNA_9557 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609145
Unique NamemRNA_9557
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length430
Alignment locationscaffold_44:84683..85498 +

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Properties
Property NameValue
TranscriptId609231
TrackFilteredModels2
ProteinId609145
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:84683..85498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609145gene_9557Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609145mRNA_9557-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9557CDS_9557Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9557 ID=mRNA_9557|Name=jgi.p|Nanoce1779_2|609145|organism=Nannochloropsis oceanica|type=mRNA|length=430bp
CAACAGTACAATAATACGCACAGGACGCTATTGCCAACGTAGGGGACGCC
GTGTTTGCTCTTCCTTGTTTGCAAGTTCCGATAGAGCCTACTGCTCGCTT
GCCGGGAAGAAGTAACATCATCACAACCGCGGCAGATAAGACACATAGCA
CCATGCCCAAATCTTGCAAAGAAGCCGCCTACGCACTGCTGGCCTGTATG
CAGCAACAACCGTGCATGAAGAGCGGGGTCGCGTTGAAGGAGTGTCTCAA
GGGCGAGGACGTGGATGCTTGCATGGTACAACGAAATGCCTACTTCCTAT
GCAAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACTCGAGTG
TATTAGCCCTGTTGTGACAACATTGCCCCGCCACGCTCTAACAAGCCAAG
CAACAAAAGAAAAAAATGGCAAAGTAAAAC
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protein sequence of jgi.p|Nanoce1779_2|609145

>mRNA_9557-protein ID=mRNA_9557-protein|Name=jgi.p|Nanoce1779_2|609145|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MPKSCKEAAYALLACMQQQPCMKSGVALKECLKGEDVDACMVQRNAYFLC
KRSQLDMRTRIRGTRVY*
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mRNA from alignment at scaffold_44:84683..85498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9557 ID=mRNA_9557|Name=jgi.p|Nanoce1779_2|609145|organism=Nannochloropsis oceanica|type=mRNA|length=816bp|location=Sequence derived from alignment at scaffold_44:84683..85498+ (Nannochloropsis oceanica)
CAACAGTACAATAATACGCACAGGACGCTATTGCCAACGTAGGGGACGCC
GTGTTTGCTCTTCCTTGTTTGCAAGTTCCGATAGAGCCTACTGCTCGCTT
GCCGGGAAGAAGTAACATCATCACAACCGCGGCAGATAAGACACATAGCA
CCATGGTAAGCTCTACATTCTCCTCTATCTGCGTCAATTTGATCATATCA
TGCCAGTGAACGTGCTGTGATCCATGCTTCACGACGATGGTCGTGTGTAT
GTCTCCCCCTTCCCCCTCTCCTTCACACATCCCACACCCTCCTTTTTCCT
AACCCGCGCACGCTCCGCATTCCACAGCCCAAATCTTGCAAAGAAGCCGC
CTACGCACTGCTGGCCTGTATGCAGCAACAACCGTGCATGAAGAGCGGGG
TCGCGTTGAAGGAGTGTCTCAAGGGCGAGGACGTGGATGCTTGCATGGTA
CGTGAACGTGGAGAGAGTGAAGCGGCGGTTGGGGAAGGTTCTCAAGCACT
CGTGGCGTGGCTCCACATTTTCGTTTTCTTTCTTGACCTATCTATCCCCT
GATTAAATCTCAATTTGGAGGGGCATCTGTTCTTGGCACAGCTTTTCAAA
CCTCACCACATGCTGCACACACTCACTTTCGCCTCTCCTCCCTCCCTCGC
CCCCTCGCCAGGTACAACGAAATGCCTACTTCCTATGCAAACGCTCTCAA
TTGGACATGCGCACCAGAATAAGAGGCACTCGAGTGTATTAGCCCTGTTG
TGACAACATTGCCCCGCCACGCTCTAACAAGCCAAGCAACAAAAGAAAAA
AATGGCAAAGTAAAAC
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Coding sequence (CDS) from alignment at scaffold_44:84683..85498+

>mRNA_9557 ID=mRNA_9557|Name=jgi.p|Nanoce1779_2|609145|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_44:84683..85498+ (Nannochloropsis oceanica)
ATGCCCAAATCTTGCAAAGAAGCCGCCTACGCACTGCTGGCCTGTATGCA
GCAACAACCGTGCATGAAGAGCGGGGTCGCGTTGAAGGAGTGTCTCAAGG
GCGAGGACGTGGATGCTTGCATGGTACAACGAAATGCCTACTTCCTATGC
AAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACTCGAGTGTA
TTAGATGCCCAAATCTTGCAAAGAAGCCGCCTACGCACTGCTGGCCTGTA
TGCAGCAACAACCGTGCATGAAGAGCGGGGTCGCGTTGAAGGAGTGTCTC
AAGGGCGAGGACGTGGATGCTTGCATGGTACAACGAAATGCCTACTTCCT
ATGCAAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACTCGAG
TGTATTAGATGCCCAAATCTTGCAAAGAAGCCGCCTACGCACTGCTGGCC
TGTATGCAGCAACAACCGTGCATGAAGAGCGGGGTCGCGTTGAAGGAGTG
TCTCAAGGGCGAGGACGTGGATGCTTGCATGGTACAACGAAATGCCTACT
TCCTATGCAAACGCTCTCAATTGGACATGCGCACCAGAATAAGAGGCACT
CGAGTGTATTAG
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Synonyms
Publications