jgi.p|Nanoce1779_2|609207, mRNA_9575 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609207
Unique Name	mRNA_9575
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3764
Alignment location	scaffold_44:130325..134088 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609293
Track	FilteredModels2
ProteinId	609207

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:130325..134088 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609207	gene_9575	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609207	mRNA_9575-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9575	CDS_9575	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:130325..134088+
coding sequence from alignment at scaffold_44:130325..134088+

mRNA sequence

>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Nanoce1779_2|609207|organism=Nannochloropsis oceanica|type=mRNA|length=3764bp
AATAGACAACCAAGCAGACAGCTGCTAAACAGCAAGGAAGACCCCTCCTG
CCAGCAGGACCTCCAACGTGGAGCCAGGCACCAAAGCAAGGCAGGACGGG
GTGAGAACGATTGTTTTCGCTCTTTTTCGCGAGCAATATCGCGGCGTATG
CCTGCTGTAAAGATAATAACGTGGACGCCAACGTCCCAAGAGCCCCTTCT
TCCCGGAGAATGGCTGAGGTCCTCGAGGCAGCCACCACAGACCTGACGTT
CCTTCTAGCCCCAGCCCCGAAAGGTCTCGGTCTAGATTTGGAAGACCGCT
CCCTTACAGACACCATTGAACGCAATCCCGAGTCCCTCACGAAGGACATA
GTCGCAGATCTTACCAAGCATCCCCTCATCGCCGTGGTAGCTGGAAAGGT
CTTTGCGGTGCGTTCCGCGTCCTTGCCGAATGTCATCCGGGCCATTGGTC
GACTCTTGCAATTCTGCGACCCCCACACCAGCAAACTGTGGGAAGAATTC
AGGTGCTCTGGTATGCTGGAAGAGCTACTTACACGCATGAGGGTAGTGGT
GGAAAAGGGACGGTACCTCTTAGCCACTGATATACTCGGGGCTTTTTTAC
CTTTGCTTTACGTAGGGGATGGTTTGAGCTGTGACGGCGACAAGACGGAC
GATTGCGGCGCTGACTTCCTCGAGCGGCTCGCATTAAACTGCAGTTTCCA
CACACAAGCCCTATTCTGTTGGGACGCTAGAGAGCACCTCTTCGTTCGCG
GCCTTGGGTGGCGGGGGGAGGAAGTTTCAGCAGTGCATTTTGGCCGTGCA
TGCCTTGATTTCCCTCCTTGTCCCTCTCGATCTGCTCGACTCTGCCCTAG
TCAATCAGTCTTCTCTGCGTGAAGGAGGGAGAGAAGGGAGAAACAGGAGT
TGAAGGGCGGGGAATGGAGACTTTTCCGGTGGTTGGGCAGCTGGAGACAG
GGTTTGATGGCCTTCCACTCCTAGTACCTAAGGAGCTCGCTTCTATACGT
CGTCATCGAGGGCAAGCTCTGCGGTGGCTGGTTCTTAAAGGACCTGCCCC
TCACGCAGTTACCGCAGCATTTTACACAGGTCTGAAAGTAAGGCGGGCGT
TCGTGAGGGCGGGAATGGTGGAAAAAGTGGTGGATATGTTGGGAAGAATT
GTGGAGAAGATGGAAAGGGGAGAGTGGGAGCTGGAGAAGTTATGCACGAC
GGCGAGGAAAAGAATGGCATTTGGTCCCTTCGCAGGAGTGGAGCATGATA
GTGACTTGCATACGCCTGGGGTTCGTGGTCAGATGGGGCTGGCAGAGGAC
GATAACACGGTACTTGCGGAATTTTTTGGTTCCTCGCTACTAATCTTTGC
CACAGCCTTGAGTAGATTGCACCCCTTGAACTCCATTGAAGGCCATGCTG
CTGCTAAAGGAGGGGTGAGGGGAAGCTGGAATCTGGCTGCGGACAGAGAT
TTACCCTCTCGCGCCTAGGAACGACATTTTCTCTCCCTCTTTCGACAGCT
TGGTGGCCTGCTGCTCCGCCTCCTCCGCACCACACCATCAACACCACCAC
CGCCATCGCCACCAATGGCGACTGCAACAATAAAATTAACGGAAGAAGCG
AGCGTTGCTAAGTCCATCTTCTTTTTCATAGCCCGCTATATGTTATCCAC
GGCCCTGGGCAGCTACACTCCCCTGGTTGAGCTCGTCCTCAGTCCTCGCA
GTGACTCCTCCCTCCAGCCCTTCTCGTCCTTTGTTTCCATGTCTTCCTCC
CTCTTCCTATCGTGTCTACCCCTATCAAGCACCAAGAACGTACCTGACAA
GCTTCTCCCCACTCTCTCTACTCTCCTCCTCTGCACCATCATCAGCAGCC
CCACTATCATATTGGTACCAGCAGTACCTCCTATTTCGCTCCTCCTCCTT
CCCTTCCCTCCATTTCTCCCTCTTCCTCCGCCGACAGCCTTCAGGCTCAT
TTCCGATCCACCTTGCTTCGCGCCCTCCTCTCAGAAGTCCGTTTCCGTGT
CCAAAATAACAATGCATGGGAGGGAACAGGGCCCTCCCTTCTCTCCCCTA
CTCAGTCAAAGCTCAGTACGAATCTCCCTCGCTTCTTTGGGCTCGTGGCT
TCAAATACCTTCCTGGTCCGTGACAAAGTCAACGATGGTGCAGCATCTGC
CGCTGCTGCTGCCGCTGCTTCATTCCTTCCTTCCTTGCCTGGTCAGGAGG
GAAAGCCCGCGAGGGATTTCTGGTTGTTGACTAATTTGCTTTTTTTTTGG
GACATGCTGCAGGTAGCTGTTGTGGCGCCCCCATTTTCGTCTTTGGAGAG
TATGCCATCGGGAGTGACGTTTCGGTCTTTGAAGCTGATACAACAACACC
TTCCAGCACCAGCAGCATCTCCTCTCTCTTCAGAGCTCAAGTCAAACATA
CCGTAGGTGGTCTTTTAGGAATTACCCTATGGATGAACGACGACATCGAA
GAATGAGTCATAAGCACCATTGACTTCCACCGCGAAATTCTCCTAATCGG
CTTCATCTGGCTCATGAAAGAAGAACCTGTCCACCCGTCCACCGCCTCCG
CCCTCTTGCACCACGCTATCAGATATCTGCCTTTCCTCCTCCCCCAGCTC
TACACTACGAGAGCCATTGAGATGGATAGGCACTTCCTTGACGCCCTCCT
TCAGTACTTATACCCCCTCCTCTCCGATGAAAAACCGAATTGCAGAGAAG
CAGCCATATTTCTCTGGCGAGAGCTTCTGACCTCTACTCCCCATAGGAAG
ATAGTTGATTCTCTACTCTCTGTCCCCAAAACTATTATCGTCAAGGGCAA
GAAAGGCAAACCGCCGGCGACGCTTCTCACGCTTAGCCTCCTTAATTGCA
GTATCACGAACAGCGACAGCAGCAGCTCTTTCTCGTCTTCTTTTTCTTCT
TTCTCCTCCTCCTCCTCCTCCTTTTCGGGTCTGCTCTCTCCTGAAGGTTT
TGACTTCCTACTCAAAGTCAACGCTGGTCGCCCCCCCTCCCTCCACCCCT
AAGTCTGCCGCATCCTCCTTCCTCCTCTCTCCTCGTTGCCCGGAATACTT
CTGGAGCGAATATGCAGACAAGGAGTTCCAATCTTGGCTCGGATCTCTCA
CTCCTGACATCCAAAAACAGATTTCCAGATCTCTCTTACTGCACGGGAAA
GATTTTAGGCTGTGGCCTGATAATGCCGCCACTGCAGCCCTTCTCTCCTA
TCGACAGGGGGTGGCAAGCACGGAGAAGAAGTGGAGGGAGACACGGCACG
AGTCGTTGAAAAGCCTGACTAAGACAGTGCTTGGCTGGAGGAAGGAGTTC
AAAACCAAGGAGGAGGTAGAACTAAGGAGGCAGGTTCGCTGGTCGCAGGA
GAGGGTGAATCGAGAGACGATCGGTGCCAGGCATATGGAGTTTATTTTTA
CTGAATTAATTGAAGGGACCTCTATGGCTGTGGCGCCGGGAGGGGGGTTG
GTTAAAGATATGGGGAAGTGAGATGGATATTTCAGCTCGCACGTGTCAAA
GAGGAGAGAGAAACGCACGAAGGGCGGGGAGGAGGAGGATGAGAATGCAC
CGGAACGATTGATTCAGGGGTTGGTTCTGGATGTGGGAGATAAGGAGTTA
TTGGGGGGAATGGAAGGAGGAGTGGGGAAAGAAGATCTAATCTTGGACTC
AGCAAAGAGCCCAATGCGAATTCGAAAATTTTTGCGGCGGGCCAGCTTCC
GTCTTGGTCGAGTGAAGGCTACTACTCCTGTTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|609207

>mRNA_9575-protein ID=mRNA_9575-protein|Name=jgi.p|Nanoce1779_2|609207|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MATATIKLTEEASVAKSIFFFIARYMLSTALGSYTPLVELVLSPRSDSSL
QPFSSFVSMSSSLFLSCLPLSSTKNVPDKLLPTLSTLLLCTIISSPTIIL
VPAVPPISLLLLPFPPFLPLPPPTAFRLISDPPCFAPSSQKSVSVSKITM
HGREQGPPFSPLLSQSSVRISLASLGSWLQIPSWSVTKSTMVQHLPLLLP
LLHSFLPCLVRRESPRGISGC*

mRNA from alignment at scaffold_44:130325..134088+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Nanoce1779_2|609207|organism=Nannochloropsis oceanica|type=mRNA|length=3764bp|location=Sequence derived from alignment at scaffold_44:130325..134088+ (Nannochloropsis oceanica)
AATAGACAACCAAGCAGACAGCTGCTAAACAGCAAGGAAGACCCCTCCTG
CCAGCAGGACCTCCAACGTGGAGCCAGGCACCAAAGCAAGGCAGGACGGG
GTGAGAACGATTGTTTTCGCTCTTTTTCGCGAGCAATATCGCGGCGTATG
CCTGCTGTAAAGATAATAACGTGGACGCCAACGTCCCAAGAGCCCCTTCT
TCCCGGAGAATGGCTGAGGTCCTCGAGGCAGCCACCACAGACCTGACGTT
CCTTCTAGCCCCAGCCCCGAAAGGTCTCGGTCTAGATTTGGAAGACCGCT
CCCTTACAGACACCATTGAACGCAATCCCGAGTCCCTCACGAAGGACATA
GTCGCAGATCTTACCAAGCATCCCCTCATCGCCGTGGTAGCTGGAAAGGT
CTTTGCGGTGCGTTCCGCGTCCTTGCCGAATGTCATCCGGGCCATTGGTC
GACTCTTGCAATTCTGCGACCCCCACACCAGCAAACTGTGGGAAGAATTC
AGGTGCTCTGGTATGCTGGAAGAGCTACTTACACGCATGAGGGTAGTGGT
GGAAAAGGGACGGTACCTCTTAGCCACTGATATACTCGGGGCTTTTTTAC
CTTTGCTTTACGTAGGGGATGGTTTGAGCTGTGACGGCGACAAGACGGAC
GATTGCGGCGCTGACTTCCTCGAGCGGCTCGCATTAAACTGCAGTTTCCA
CACACAAGCCCTATTCTGTTGGGACGCTAGAGAGCACCTCTTCGTTCGCG
GCCTTGGGTGGCGGGGGGAGGAAGTTTCAGCAGTGCATTTTGGCCGTGCA
TGCCTTGATTTCCCTCCTTGTCCCTCTCGATCTGCTCGACTCTGCCCTAG
TCAATCAGTCTTCTCTGCGTGAAGGAGGGAGAGAAGGGAGAAACAGGAGT
TGAAGGGCGGGGAATGGAGACTTTTCCGGTGGTTGGGCAGCTGGAGACAG
GGTTTGATGGCCTTCCACTCCTAGTACCTAAGGAGCTCGCTTCTATACGT
CGTCATCGAGGGCAAGCTCTGCGGTGGCTGGTTCTTAAAGGACCTGCCCC
TCACGCAGTTACCGCAGCATTTTACACAGGTCTGAAAGTAAGGCGGGCGT
TCGTGAGGGCGGGAATGGTGGAAAAAGTGGTGGATATGTTGGGAAGAATT
GTGGAGAAGATGGAAAGGGGAGAGTGGGAGCTGGAGAAGTTATGCACGAC
GGCGAGGAAAAGAATGGCATTTGGTCCCTTCGCAGGAGTGGAGCATGATA
GTGACTTGCATACGCCTGGGGTTCGTGGTCAGATGGGGCTGGCAGAGGAC
GATAACACGGTACTTGCGGAATTTTTTGGTTCCTCGCTACTAATCTTTGC
CACAGCCTTGAGTAGATTGCACCCCTTGAACTCCATTGAAGGCCATGCTG
CTGCTAAAGGAGGGGTGAGGGGAAGCTGGAATCTGGCTGCGGACAGAGAT
TTACCCTCTCGCGCCTAGGAACGACATTTTCTCTCCCTCTTTCGACAGCT
TGGTGGCCTGCTGCTCCGCCTCCTCCGCACCACACCATCAACACCACCAC
CGCCATCGCCACCAATGGCGACTGCAACAATAAAATTAACGGAAGAAGCG
AGCGTTGCTAAGTCCATCTTCTTTTTCATAGCCCGCTATATGTTATCCAC
GGCCCTGGGCAGCTACACTCCCCTGGTTGAGCTCGTCCTCAGTCCTCGCA
GTGACTCCTCCCTCCAGCCCTTCTCGTCCTTTGTTTCCATGTCTTCCTCC
CTCTTCCTATCGTGTCTACCCCTATCAAGCACCAAGAACGTACCTGACAA
GCTTCTCCCCACTCTCTCTACTCTCCTCCTCTGCACCATCATCAGCAGCC
CCACTATCATATTGGTACCAGCAGTACCTCCTATTTCGCTCCTCCTCCTT
CCCTTCCCTCCATTTCTCCCTCTTCCTCCGCCGACAGCCTTCAGGCTCAT
TTCCGATCCACCTTGCTTCGCGCCCTCCTCTCAGAAGTCCGTTTCCGTGT
CCAAAATAACAATGCATGGGAGGGAACAGGGCCCTCCCTTCTCTCCCCTA
CTCAGTCAAAGCTCAGTACGAATCTCCCTCGCTTCTTTGGGCTCGTGGCT
TCAAATACCTTCCTGGTCCGTGACAAAGTCAACGATGGTGCAGCATCTGC
CGCTGCTGCTGCCGCTGCTTCATTCCTTCCTTCCTTGCCTGGTCAGGAGG
GAAAGCCCGCGAGGGATTTCTGGTTGTTGACTAATTTGCTTTTTTTTTGG
GACATGCTGCAGGTAGCTGTTGTGGCGCCCCCATTTTCGTCTTTGGAGAG
TATGCCATCGGGAGTGACGTTTCGGTCTTTGAAGCTGATACAACAACACC
TTCCAGCACCAGCAGCATCTCCTCTCTCTTCAGAGCTCAAGTCAAACATA
CCGTAGGTGGTCTTTTAGGAATTACCCTATGGATGAACGACGACATCGAA
GAATGAGTCATAAGCACCATTGACTTCCACCGCGAAATTCTCCTAATCGG
CTTCATCTGGCTCATGAAAGAAGAACCTGTCCACCCGTCCACCGCCTCCG
CCCTCTTGCACCACGCTATCAGATATCTGCCTTTCCTCCTCCCCCAGCTC
TACACTACGAGAGCCATTGAGATGGATAGGCACTTCCTTGACGCCCTCCT
TCAGTACTTATACCCCCTCCTCTCCGATGAAAAACCGAATTGCAGAGAAG
CAGCCATATTTCTCTGGCGAGAGCTTCTGACCTCTACTCCCCATAGGAAG
ATAGTTGATTCTCTACTCTCTGTCCCCAAAACTATTATCGTCAAGGGCAA
GAAAGGCAAACCGCCGGCGACGCTTCTCACGCTTAGCCTCCTTAATTGCA
GTATCACGAACAGCGACAGCAGCAGCTCTTTCTCGTCTTCTTTTTCTTCT
TTCTCCTCCTCCTCCTCCTCCTTTTCGGGTCTGCTCTCTCCTGAAGGTTT
TGACTTCCTACTCAAAGTCAACGCTGGTCGCCCCCCCTCCCTCCACCCCT
AAGTCTGCCGCATCCTCCTTCCTCCTCTCTCCTCGTTGCCCGGAATACTT
CTGGAGCGAATATGCAGACAAGGAGTTCCAATCTTGGCTCGGATCTCTCA
CTCCTGACATCCAAAAACAGATTTCCAGATCTCTCTTACTGCACGGGAAA
GATTTTAGGCTGTGGCCTGATAATGCCGCCACTGCAGCCCTTCTCTCCTA
TCGACAGGGGGTGGCAAGCACGGAGAAGAAGTGGAGGGAGACACGGCACG
AGTCGTTGAAAAGCCTGACTAAGACAGTGCTTGGCTGGAGGAAGGAGTTC
AAAACCAAGGAGGAGGTAGAACTAAGGAGGCAGGTTCGCTGGTCGCAGGA
GAGGGTGAATCGAGAGACGATCGGTGCCAGGCATATGGAGTTTATTTTTA
CTGAATTAATTGAAGGGACCTCTATGGCTGTGGCGCCGGGAGGGGGGTTG
GTTAAAGATATGGGGAAGTGAGATGGATATTTCAGCTCGCACGTGTCAAA
GAGGAGAGAGAAACGCACGAAGGGCGGGGAGGAGGAGGATGAGAATGCAC
CGGAACGATTGATTCAGGGGTTGGTTCTGGATGTGGGAGATAAGGAGTTA
TTGGGGGGAATGGAAGGAGGAGTGGGGAAAGAAGATCTAATCTTGGACTC
AGCAAAGAGCCCAATGCGAATTCGAAAATTTTTGCGGCGGGCCAGCTTCC
GTCTTGGTCGAGTGAAGGCTACTACTCCTGTTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_44:130325..134088+

>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Nanoce1779_2|609207|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_44:130325..134088+ (Nannochloropsis oceanica)
ATGGCGACTGCAACAATAAAATTAACGGAAGAAGCGAGCGTTGCTAAGTC
CATCTTCTTTTTCATAGCCCGCTATATGTTATCCACGGCCCTGGGCAGCT
ACACTCCCCTGGTTGAGCTCGTCCTCAGTCCTCGCAGTGACTCCTCCCTC
CAGCCCTTCTCGTCCTTTGTTTCCATGTCTTCCTCCCTCTTCCTATCGTG
TCTACCCCTATCAAGCACCAAGAACGTACCTGACAAGCTTCTCCCCACTC
TCTCTACTCTCCTCCTCTGCACCATCATCAGCAGCCCCACTATCATATTG
GTACCAGCAGTACCTCCTATTTCGCTCCTCCTCCTTCCCTTCCCTCCATT
TCTCCCTCTTCCTCCGCCGACAGCCTTCAGGCTCATTTCCGATCCACCTT
GCTTCGCGCCCTCCTCTCAGAAGTCCGTTTCCGTGTCCAAAATAACAATG
CATGGGAGGGAACAGGGCCCTCCCTTCTCTCCCCTACTCAGTCAAAGCTC
AGTACGAATCTCCCTCGCTTCTTTGGGCTCGTGGCTTCAAATACCTTCCT
GGTCCGTGACAAAGTCAACGATGGTGCAGCATCTGCCGCTGCTGCTGCCG
CTGCTTCATTCCTTCCTTCCTTGCCTGGTCAGGAGGGAAAGCCCGCGAGG
GATTTCTGGTTGTTGA

Synonyms

Publications