jgi.p|Nanoce1779_2|633863, mRNA_10069 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633863
Unique NamemRNA_10069
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length617
Alignment locationscaffold_46:29958..30574 -

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Properties
Property NameValue
TranscriptId633949
TrackFilteredModels2
ProteinId633863
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:29958..30574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633863gene_10069Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633863mRNA_10069-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10069CDS_10069Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10069 ID=mRNA_10069|Name=jgi.p|Nanoce1779_2|633863|organism=Nannochloropsis oceanica|type=mRNA|length=617bp
AGCAAGCCAACAATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGC
TTTATGCGCCAGTAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCT
CCACCTACGCTCTGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAG
GTGAAGCCCAACACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTA
CCACATTGTAATCCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGA
AGGGTTTCATCACCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGT
CTCGAAGTCTATGGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAG
TGCCGTTGGTGATCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCA
ATGGCAAGCTTACCTTTGGCTTTAATTATGAAGGCTCATGATAGCGTGTC
GTACTGAATATTATGATTGAATGACCGGACCAGCTTCTCATTCCAATCTC
TATTTGTTTGCTGTGATGTGTTGCCGAGACGCGTGTATCTTTGACGACGT
CCTGTCATTTCTACTCTTGCACGAGGATGTGAGCATAATTCAGGGACCGA
TGAAAGCCCGGCAACCC
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protein sequence of jgi.p|Nanoce1779_2|633863

>mRNA_10069-protein ID=mRNA_10069-protein|Name=jgi.p|Nanoce1779_2|633863|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MFIKKLPSLLVLALCASNAAAGYTKTVNASTYALTTYDAAADKPLQVKPN
TVYTIDKFLDEDYHIVIQCPQPKNGRMKKKGFITYLSYYEGFNDSGLEVY
GDGSDDVQGEIWSAVGDPGYGSFLALFCTNGKLTFGFNYEGS*
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mRNA from alignment at scaffold_46:29958..30574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10069 ID=mRNA_10069|Name=jgi.p|Nanoce1779_2|633863|organism=Nannochloropsis oceanica|type=mRNA|length=617bp|location=Sequence derived from alignment at scaffold_46:29958..30574- (Nannochloropsis oceanica)
AGCAAGCCAACAATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGC
TTTATGCGCCAGTAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCT
CCACCTACGCTCTGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAG
GTGAAGCCCAACACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTA
CCACATTGTAATCCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGA
AGGGTTTCATCACCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGT
CTCGAAGTCTATGGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAG
TGCCGTTGGTGATCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCA
ATGGCAAGCTTACCTTTGGCTTTAATTATGAAGGCTCATGATAGCGTGTC
GTACTGAATATTATGATTGAATGACCGGACCAGCTTCTCATTCCAATCTC
TATTTGTTTGCTGTGATGTGTTGCCGAGACGCGTGTATCTTTGACGACGT
CCTGTCATTTCTACTCTTGCACGAGGATGTGAGCATAATTCAGGGACCGA
TGAAAGCCCGGCAACCC
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Coding sequence (CDS) from alignment at scaffold_46:29958..30574-

>mRNA_10069 ID=mRNA_10069|Name=jgi.p|Nanoce1779_2|633863|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_46:29958..30574- (Nannochloropsis oceanica)
ATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGCTTTATGCGCCAG
TAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCTCCACCTACGCTC
TGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAGGTGAAGCCCAAC
ACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTACCACATTGTAAT
CCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGAAGGGTTTCATCA
CCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGTCTCGAAGTCTAT
GGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAGTGCCGTTGGTGA
TCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCAATGGCAAGCTTA
CCTTTGGCTTTAATTATGAAGGCTCATGA
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Synonyms
Publications