jgi.p|Nanoce1779_2|533905, mRNA_9972 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533905
Unique NamemRNA_9972
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length570
Alignment locationscaffold_49:61086..61655 -

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Properties
Property NameValue
TranscriptId533991
TrackFilteredModels2
ProteinId533905
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:61086..61655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533905gene_9972Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9972CDS_9972Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533905mRNA_9972-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9972 ID=mRNA_9972|Name=jgi.p|Nanoce1779_2|533905|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
ATGGCGGCGGAAGAAGAAAAGGACATCGCCGCACTATCCCACATCATCAA
CGGCAGTCCAGGCACTGACAATATCAACCCACCCACGCCCGAGGAGTCCG
AGGCATTGGTGCGGATACTACAGGAAAAGCCTAGTCTGATTTCTAAACTC
GCAGAGACCCTGTCACCTTGCCGCCATGCCGCCCCTAGCCCTGCACAACG
AGAGGAAAAGGAAGCTTACATGCAACAATTGGAAAATGAAGGCAAAGTGC
CTGAGGGAAAGGTTCTGATTCGACCCAAGGCGGGCTTTGTTATCAAGACG
TTCAGGATGGTGATGGAAGGAGCAGAGGAGAATGGGGGAGGGGAGAGGGA
CCGTGTGGCCGAGCCGAAGCATAAGACGAAAGTATTCGTTAACATCGTCT
CTTCGGACAAGCTTGCTCGCCCCACTGCTACCGGGGATCCTTCTTCCGTA
AAGGGAAAGGCAGGAAAAATGATCACGGTTCCAAACGTGGTGGGGCCATC
ACGCATGGAGGAAGACAATAAAGGCGCCTCAGTTCCTACAGTTGATTTCT
GCGTGCATCCTTATGCGGTC
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protein sequence of jgi.p|Nanoce1779_2|533905

>mRNA_9972-protein ID=mRNA_9972-protein|Name=jgi.p|Nanoce1779_2|533905|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MAAEEEKDIAALSHIINGSPGTDNINPPTPEESEALVRILQEKPSLISKL
AETLSPCRHAAPSPAQREEKEAYMQQLENEGKVPEGKVLIRPKAGFVIKT
FRMVMEGAEENGGGERDRVAEPKHKTKVFVNIVSSDKLARPTATGDPSSV
KGKAGKMITVPNVVGPSRMEEDNKGASVPTVDFCVHPYAV
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mRNA from alignment at scaffold_49:61086..61655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9972 ID=mRNA_9972|Name=jgi.p|Nanoce1779_2|533905|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at scaffold_49:61086..61655- (Nannochloropsis oceanica)
ATGGCGGCGGAAGAAGAAAAGGACATCGCCGCACTATCCCACATCATCAA
CGGCAGTCCAGGCACTGACAATATCAACCCACCCACGCCCGAGGAGTCCG
AGGCATTGGTGCGGATACTACAGGAAAAGCCTAGTCTGATTTCTAAACTC
GCAGAGACCCTGTCACCTTGCCGCCATGCCGCCCCTAGCCCTGCACAACG
AGAGGAAAAGGAAGCTTACATGCAACAATTGGAAAATGAAGGCAAAGTGC
CTGAGGGAAAGGTTCTGATTCGACCCAAGGCGGGCTTTGTTATCAAGACG
TTCAGGATGGTGATGGAAGGAGCAGAGGAGAATGGGGGAGGGGAGAGGGA
CCGTGTGGCCGAGCCGAAGCATAAGACGAAAGTATTCGTTAACATCGTCT
CTTCGGACAAGCTTGCTCGCCCCACTGCTACCGGGGATCCTTCTTCCGTA
AAGGGAAAGGCAGGAAAAATGATCACGGTTCCAAACGTGGTGGGGCCATC
ACGCATGGAGGAAGACAATAAAGGCGCCTCAGTTCCTACAGTTGATTTCT
GCGTGCATCCTTATGCGGTC
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Coding sequence (CDS) from alignment at scaffold_49:61086..61655-

>mRNA_9972 ID=mRNA_9972|Name=jgi.p|Nanoce1779_2|533905|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_49:61086..61655- (Nannochloropsis oceanica)
ATGGCGGCGGAAGAAGAAAAGGACATCGCCGCACTATCCCACATCATCAA
CGGCAGTCCAGGCACTGACAATATCAACCCACCCACGCCCGAGGAGTCCG
AGGCATTGGTGCGGATACTACAGGAAAAGCCTAGTCTGATTTCTAAACTC
GCAGAGACCCTGTCACCTTGCCGCCATGCCGCCCCTAGCCCTGCACAACG
AGAGGAAAAGGAAGCTTACATGCAACAATTGGAAAATGAAGGCAAAGTGC
CTGAGGGAAAGGTTCTGATTCGACCCAAGGCGGGCTTTGTTATCAAGACG
TTCAGGATGGTGATGGAAGGAGCAGAGGAGAATGGGGGAGGGGAGAGGGA
CCGTGTGGCCGAGCCGAAGCATAAGACGAAAGTATTCGTTAACATCGTCT
CTTCGGACAAGCTTGCTCGCCCCACTGCTACCGGGGATCCTTCTTCCGTA
AAGGGAAAGGCAGGAAAAATGATCACGGTTCCAAACGTGGTGGGGCCATC
ACGCATGGAGGAAGACAATAAAGGCGCCTCAGTTCCTACAGTTGATTTCT
GCGTGCATCCTTATGCGGTC
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Synonyms
Publications