jgi.p|Nanoce1779_2|609784, mRNA_10253 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609784
Unique NamemRNA_10253
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1105
Alignment locationscaffold_47:11373..12477 +

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Properties
Property NameValue
TranscriptId609870
TrackFilteredModels2
ProteinId609784
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:11373..12477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609784gene_10253Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609784mRNA_10253-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10253CDS_10253Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10253 ID=mRNA_10253|Name=jgi.p|Nanoce1779_2|609784|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
CATTCAGTCGACATTTTCACACAAAAAAAACCATCAAAACGACCAAAAAC
TATTACCGTACGTTCACATATATCATGAACTCTCACTTTTATTGTTGTTA
TGTGCAAAAATATGAAGTATATGTGGAGAAATGGCAGGGGTCAGCAGGAA
GCTATCAACGCCGAGTTAAGGCTGTTTGAGAGCGCGCTCCAGCCGGCGAG
AGGAGGCCGCGAAAGAAGTCTTATAATCCATTAATTCATGACACGGCCTT
TAAGGCGCGCAATGGAGGGATTCAACTCCCCTATCTTTGGGTTAAGGTGG
TAGGATCACGTCTTGGTTTCTCACGACACAACCATGCCACCGACATGCCC
AATAGACACACACTTTGTTTTAGTATTGTTTTCACGGCTTTGTTAACATG
TGGAGCTGCGAGTTGCGTGCGTGCACCCACTGCCAACCAAAAGGGACCAG
TCTTAGTCCATGCACCAAGCTTAACTCACCCCCCTCTGAGGCATATGTAT
GCATGCGTGCCCTGCCTCTACCCTCCTTCTCCTTTCACCCCCACCACACT
ACACACACGCCCTCCTTTGGTCCACCACGCCAAAAAGGTGTGACATGTGG
GCTTGCGGGTTGTCCGTGCATCCTGTGCCCTACCACGGCGTGCGTGTGTC
AATGCAACGACAGGGCAGGGAGAAGGAGGAATACAGCATTGAAGCGCTTT
TGTGTTGGCCCACGTCCCCACCCGCCCTTCCTCTCCTCGTCCCTTTACAC
ATACGGACGGACACTCCTGGTGGTGCTTATGGGCATGACTGTGCGTGGGA
AATCTTGGTTGTTGGCCTGGTGCGTGGAGCAGGTGTTATGGCCAGTGCCT
GCCTGCTCTCCCAAAACAGCACTTCACGACCCTCCCTACGTACCTTTGGA
CACACCTTCCACCACCCACACGCACACAGAAACCATCCACCTACCAATAA
TGAATTCATACATATATTTTCCTGCTTTATGTGTGGCGGTGGTCGTGTGT
CTTCTTTTTTGGTGTCGACTGACAGTTTTTCTGGCATATTAACTGTGAAC
CCGCCTCATGTACCCCGTCCCCTCACTAACTCCCACTTCCCCCCCCCCCC
CCCCC
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protein sequence of jgi.p|Nanoce1779_2|609784

>mRNA_10253-protein ID=mRNA_10253-protein|Name=jgi.p|Nanoce1779_2|609784|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MWSCELRACTHCQPKGTSLSPCTKLNSPPSEAYVCMRALPLPSFSFHPHH
TTHTPSFGPPRQKGVTCGLAGCPCILCPTTACVCQCNDRAGRRRNTALKR
FCVGPRPHPPFLSSSLYTYGRTLLVVLMGMTVRGKSWLLAWCVEQVLWPV
PACSPKTALHDPPYVPLDTPSTTHTHTETIHLPIMNSYIYFPALCVAVVV
CLLFWCRLTVFLAY*
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mRNA from alignment at scaffold_47:11373..12477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10253 ID=mRNA_10253|Name=jgi.p|Nanoce1779_2|609784|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp|location=Sequence derived from alignment at scaffold_47:11373..12477+ (Nannochloropsis oceanica)
CATTCAGTCGACATTTTCACACAAAAAAAACCATCAAAACGACCAAAAAC
TATTACCGTACGTTCACATATATCATGAACTCTCACTTTTATTGTTGTTA
TGTGCAAAAATATGAAGTATATGTGGAGAAATGGCAGGGGTCAGCAGGAA
GCTATCAACGCCGAGTTAAGGCTGTTTGAGAGCGCGCTCCAGCCGGCGAG
AGGAGGCCGCGAAAGAAGTCTTATAATCCATTAATTCATGACACGGCCTT
TAAGGCGCGCAATGGAGGGATTCAACTCCCCTATCTTTGGGTTAAGGTGG
TAGGATCACGTCTTGGTTTCTCACGACACAACCATGCCACCGACATGCCC
AATAGACACACACTTTGTTTTAGTATTGTTTTCACGGCTTTGTTAACATG
TGGAGCTGCGAGTTGCGTGCGTGCACCCACTGCCAACCAAAAGGGACCAG
TCTTAGTCCATGCACCAAGCTTAACTCACCCCCCTCTGAGGCATATGTAT
GCATGCGTGCCCTGCCTCTACCCTCCTTCTCCTTTCACCCCCACCACACT
ACACACACGCCCTCCTTTGGTCCACCACGCCAAAAAGGTGTGACATGTGG
GCTTGCGGGTTGTCCGTGCATCCTGTGCCCTACCACGGCGTGCGTGTGTC
AATGCAACGACAGGGCAGGGAGAAGGAGGAATACAGCATTGAAGCGCTTT
TGTGTTGGCCCACGTCCCCACCCGCCCTTCCTCTCCTCGTCCCTTTACAC
ATACGGACGGACACTCCTGGTGGTGCTTATGGGCATGACTGTGCGTGGGA
AATCTTGGTTGTTGGCCTGGTGCGTGGAGCAGGTGTTATGGCCAGTGCCT
GCCTGCTCTCCCAAAACAGCACTTCACGACCCTCCCTACGTACCTTTGGA
CACACCTTCCACCACCCACACGCACACAGAAACCATCCACCTACCAATAA
TGAATTCATACATATATTTTCCTGCTTTATGTGTGGCGGTGGTCGTGTGT
CTTCTTTTTTGGTGTCGACTGACAGTTTTTCTGGCATATTAACTGTGAAC
CCGCCTCATGTACCCCGTCCCCTCACTAACTCCCACTTCCCCCCCCCCCC
CCCCC
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Coding sequence (CDS) from alignment at scaffold_47:11373..12477+

>mRNA_10253 ID=mRNA_10253|Name=jgi.p|Nanoce1779_2|609784|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_47:11373..12477+ (Nannochloropsis oceanica)
ATGTGGAGCTGCGAGTTGCGTGCGTGCACCCACTGCCAACCAAAAGGGAC
CAGTCTTAGTCCATGCACCAAGCTTAACTCACCCCCCTCTGAGGCATATG
TATGCATGCGTGCCCTGCCTCTACCCTCCTTCTCCTTTCACCCCCACCAC
ACTACACACACGCCCTCCTTTGGTCCACCACGCCAAAAAGGTGTGACATG
TGGGCTTGCGGGTTGTCCGTGCATCCTGTGCCCTACCACGGCGTGCGTGT
GTCAATGCAACGACAGGGCAGGGAGAAGGAGGAATACAGCATTGAAGCGC
TTTTGTGTTGGCCCACGTCCCCACCCGCCCTTCCTCTCCTCGTCCCTTTA
CACATACGGACGGACACTCCTGGTGGTGCTTATGGGCATGACTGTGCGTG
GGAAATCTTGGTTGTTGGCCTGGTGCGTGGAGCAGGTGTTATGGCCAGTG
CCTGCCTGCTCTCCCAAAACAGCACTTCACGACCCTCCCTACGTACCTTT
GGACACACCTTCCACCACCCACACGCACACAGAAACCATCCACCTACCAA
TAATGAATTCATACATATATTTTCCTGCTTTATGTGTGGCGGTGGTCGTG
TGTCTTCTTTTTTGGTGTCGACTGACAGTTTTTCTGGCATATTAA
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Synonyms
Publications