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Properties
| Property Name | Value |
|---|
| TranscriptId | 328187 |
| Track | FilteredModels2 |
| ProteinId | 328101 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:256731..257863 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2404 ID=mRNA_2404|Name=jgi.p|Nanoce1779_2|328101|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
AATACAGGGAACACGTGACCTTTCCTTACCTCCCCACCTTTACGTGCGCG
CAAGCCGACCAGGATGAAGGCTTCCTACCGCTTCTCAACGATTGTCTTGG
TGGCCGCGGCGACACTCAGTTTTGTGGCAAGCTTTCAACTTCCTTTTAGT
AGCCGATCGGGTATCAGACCACTCGCGCTTTCGAGACGCACGGCCCCAAT
CCCTACCCACCATTACTCCTCCCCTGTCCTGCGCGCCTCGTCCAGAGAAA
GCACGCCTGGAGATGAAATAGGCGAGAGCAACACTCCCGAAAGCCGGGGG
CCTCGTACTCTTATCACAGCCCTAGCTTGGGCTGGCTTTGTGGCTTACGC
CTTCCTTTTGGCGCCCGGCAAGGATCCCGCCTCCACGGCCCTTGATGCTC
AACTCCTGAAGGACATCATTGGCAACCCCTTTTCCCCAACCCTTCCCCCC
ATATTTCTTGCCATCTTCAACGCCTTGGGCCTCATGCCCCTCGTCTATTC
CTCTCTCCTCCTCCCGGGCTCTCGAAACCAATCTCCTCCGGCCTGGCCTT
TTTGCGTCGGCTCGTTCGCTTTTGGCTTCTTTGCCATGGGGCCATACCTC
GCCTTGCGTAGCTTCCAGCCCTCCCCTGGCGCCACGCCTTCGAACCGTAT
GGTGGCTCGTTTTGTCGAGAATAAGCTGCCAGCTGCTCTCGCATTCATTT
CTTCCCTGTACTTGGTGTATTTGGTCGTCGGGGGAGGAGGAGGAGGGGGA
GGAGTGGGAGGGTTGGAGGCGTACCTTACGCTATTCAGGACGCAGACATT
GCCGCACGTGTCCTCTTTAGATTTGTTGATTTTGTCCGTATTCGTGGCGG
ATCCGATGAGAGAGGACATGCTTAGGAGGGGTTGGTATAGCGGGGGAAAG
CTGGCGGCGTTTGTGAGCGTGCCGGTGGTAGGACCATGCCTGTATCTATT
GCTACGGCCGGCGTTATCCGTCGATGAGGAGGAGGAAGTGTGAATGAGA back to topprotein sequence of jgi.p|Nanoce1779_2|328101 >mRNA_2404-protein ID=mRNA_2404-protein|Name=jgi.p|Nanoce1779_2|328101|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MKASYRFSTIVLVAAATLSFVASFQLPFSSRSGIRPLALSRRTAPIPTHH
YSSPVLRASSRESTPGDEIGESNTPESRGPRTLITALAWAGFVAYAFLLA
PGKDPASTALDAQLLKDIIGNPFSPTLPPIFLAIFNALGLMPLVYSSLLL
PGSRNQSPPAWPFCVGSFAFGFFAMGPYLALRSFQPSPGATPSNRMVARF
VENKLPAALAFISSLYLVYLVVGGGGGGGGVGGLEAYLTLFRTQTLPHVS
SLDLLILSVFVADPMREDMLRRGWYSGGKLAAFVSVPVVGPCLYLLLRPA
LSVDEEEEV* back to topmRNA from alignment at scaffold_5:256731..257863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2404 ID=mRNA_2404|Name=jgi.p|Nanoce1779_2|328101|organism=Nannochloropsis oceanica|type=mRNA|length=1133bp|location=Sequence derived from alignment at scaffold_5:256731..257863- (Nannochloropsis oceanica)
AATACAGGGAACACGTGACCTTTCCTTACCTCCCCACCTTTACGTGCGCG
CAAGCCGACCAGGATGAAGGCTTCCTACCGCTTCTCAACGATTGTCTTGG
TGGCCGCGGCGACACTCAGTTTTGTGGCAAGCTTTCAACTTCCTTTTAGT
AGCCGATCGGGTATCAGACCACTCGCGCTTTCGAGACGCACGGCCCCAAT
CCCTACCCACCATTACTCCTCCCCTGTCCTGCGCGCCTCGTCCAGAGAAA
GCACGCCTGGAGATGAAATAGGCGAGAGCAACACTCCCGAAAGCCGGGGG
CCTCGTACTCTTATCACAGCCCTAGCTTGGGCTGGCTTTGTGGCTTACGC
CTTCCTTTTGGCGCCCGGCAAGGATCCCGCCTCCACGGCCCTTGATGCTC
AACTCCTGAAGGTTAGTTTTCCAAGCATGGTGCGAGTGCCTACTGTCAAA
ACATCTGTCAGTCTCCTACCGTTTTACATCCGCCACTTATCAACGCTTTT
CTCCCTCCTTGCCGCTCCATCCTTGACAAATTTACCCTTTTTCAGGACAT
CATTGGCAACCCCTTTTCCCCAACCCTTCCCCCCATATTTCTTGCCATCT
TCAACGCCTTGGGCCTCATGCCCCTCGTCTATTCCTCTCTCCTCCTCCCG
GGCTCTCGAAACCAATCTCCTCCGGCCTGGCCTTTTTGCGTCGGCTCGTT
CGCTTTTGGCTTCTTTGCCATGGGGCCATACCTCGCCTTGCGTAGCTTCC
AGCCCTCCCCTGGCGCCACGCCTTCGAACCGTATGGTGGCTCGTTTTGTC
GAGAATAAGCTGCCAGCTGCTCTCGCATTCATTTCTTCCCTGTACTTGGT
GTATTTGGTCGTCGGGGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGTTGG
AGGCGTACCTTACGCTATTCAGGACGCAGACATTGCCGCACGTGTCCTCT
TTAGATTTGTTGATTTTGTCCGTATTCGTGGCGGATCCGATGAGAGAGGA
CATGCTTAGGAGGGGTTGGTATAGCGGGGGAAAGCTGGCGGCGTTTGTGA
GCGTGCCGGTGGTAGGACCATGCCTGTATCTATTGCTACGGCCGGCGTTA
TCCGTCGATGAGGAGGAGGAAGTGTGAATGAGA back to topCoding sequence (CDS) from alignment at scaffold_5:256731..257863- >mRNA_2404 ID=mRNA_2404|Name=jgi.p|Nanoce1779_2|328101|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_5:256731..257863- (Nannochloropsis oceanica)
GACATCATTGGCAACCCCTTTTCCCCAACCCTTCCCCCCATATTTCTTGC
CATCTTCAACGCCTTGGGCCTCATGCCCCTCGTCTATTCCTCTCTCCTCC
TCCCGGGCTCTCGAAACCAATCTCCTCCGGCCTGGCCTTTTTGCGTCGGC
TCGTTCGCTTTTGGCTTCTTTGCCATGGGGCCATACCTCGCCTTGCGTAG
CTTCCAGCCCTCCCCTGGCGCCACGCCTTCGAACCGTATGGTGGCTCGTT
TTGTCGAGAATAAGCTGCCAGCTGCTCTCGCATTCATTTCTTCCCTGTAC
TTGGTGTATTTGGTCGTCGGGGGAGGAGGAGGAGGGGGAGGAGTGGGAGG
GTTGGAGGCGTACCTTACGCTATTCAGGACGCAGACATTGCCGCACGTGT
CCTCTTTAGATTTGTTGATTTTGTCCGTATTCGTGGCGGATCCGATGAGA
GAGGACATGCTTAGGAGGGGTTGGTATAGCGGGGGAAAGCTGGCGGCGTT
TGTGAGCGTGCCGGTGGTAGGACCATGCCTGTATCTATTGCTACGGCCGG
CGTTATCCGTCGATGAGGAGGAGGAAGTGTGAATGAAGGCTTCCTACCGC
TTCTCAACGATTGTCTTGGTGGCCGCGGCGACACTCAGTTTTGTGGCAAG
CTTTCAACTTCCTTTTAGTAGCCGATCGGGTATCAGACCACTCGCGCTTT
CGAGACGCACGGCCCCAATCCCTACCCACCATTACTCCTCCCCTGTCCTG
CGCGCCTCGTCCAGAGAAAGCACGCCTGGAGATGAAATAGGCGAGAGCAA
CACTCCCGAAAGCCGGGGGCCTCGTACTCTTATCACAGCCCTAGCTTGGG
CTGGCTTTGTGGCTTACGCCTTCCTTTTGGCGCCCGGCAAGGATCCCGCC
TCCACGGCCCTTGATGCTCAACTCCTGAAGGACATCATTGGCAACCCCTT
TTCCCCAACCCTTCCCCCCATATTTCTTGCCATCTTCAACGCCTTGGGCC
TCATGCCCCTCGTCTATTCCTCTCTCCTCCTCCCGGGCTCTCGAAACCAA
TCTCCTCCGGCCTGGCCTTTTTGCGTCGGCTCGTTCGCTTTTGGCTTCTT
TGCCATGGGGCCATACCTCGCCTTGCGTAGCTTCCAGCCCTCCCCTGGCG
CCACGCCTTCGAACCGTATGGTGGCTCGTTTTGTCGAGAATAAGCTGCCA
GCTGCTCTCGCATTCATTTCTTCCCTGTACTTGGTGTATTTGGTCGTCGG
GGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGTTGGAGGCGTACCTTACGC
TATTCAGGACGCAGACATTGCCGCACGTGTCCTCTTTAGATTTGTTGATT
TTGTCCGTATTCGTGGCGGATCCGATGAGAGAGGACATGCTTAGGAGGGG
TTGGTATAGCGGGGGAAAGCTGGCGGCGTTTGTGAGCGTGCCGGTGGTAG
GACCATGCCTGTATCTATTGCTACGGCCGGCGTTATCCGTCGATGAGGAG
GAGGAAGTGTGAATGAAGGCTTCCTACCGCTTCTCAACGATTGTCTTGGT
GGCCGCGGCGACACTCAGTTTTGTGGCAAGCTTTCAACTTCCTTTTAGTA
GCCGATCGGGTATCAGACCACTCGCGCTTTCGAGACGCACGGCCCCAATC
CCTACCCACCATTACTCCTCCCCTGTCCTGCGCGCCTCGTCCAGAGAAAG
CACGCCTGGAGATGAAATAGGCGAGAGCAACACTCCCGAAAGCCGGGGGC
CTCGTACTCTTATCACAGCCCTAGCTTGGGCTGGCTTTGTGGCTTACGCC
TTCCTTTTGGCGCCCGGCAAGGATCCCGCCTCCACGGCCCTTGATGCTCA
ACTCCTGAAG back to top
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