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Properties
| Property Name | Value |
|---|
| TranscriptId | 580341 |
| Track | FilteredModels2 |
| ProteinId | 580255 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:265070..266907 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2408 ID=mRNA_2408|Name=jgi.p|Nanoce1779_2|580255|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
ACAGAAACACGCAGCAAATCAAATCCCTCCACGACTGAGCACGATGCCGC
CCAAGGCCAAGGAAGAGAAGAAGGACAACGTCCGTTTTGGCCGCGTCCGG
AGCAACCTAAAAATGGGGCTAGTGGGTCTACCCAACGTCGGCAAGTCCAG
TCTGTTCAATCTGCTCTGTAATGCCTCGGCGGCGGCCAGCAATTTCGCTT
TCTGTACCATCGACCCCAACGAATCCCGCTGCGTCGTGCCTGACCAGCGC
TTTGACTATCTCTGCGATTTACACAAGCCTGGGAATAAGATTCCTGCTTA
TTTGCACGTGACGGACATCGCGGGTCTGATTAAGGGTGCCAGTGAAGGGG
CGGGGTTGGGGAATGCTTTCCTCTCTCACATCGCCGCCGTCGACGGGATC
TTCCACCTGATCCGTGCCTTCGAGAACGATGAGATTATGCATGTGGATGA
CTCGGTGGACCCTGTCCGTGATCTGGAGACAATCACGAGCGAGCTGTGCA
TGAAAGACTTGGACACAATCGAGCGAGCGATCGAGAATGAGAGGAAGGAG
CAAAAGCGCGTCAAGATGACCAAGGAAATGGAAGCTTACTTCGCCCTTCT
AGACAAAATTAAGACCATGCTCGAGGCCAACCACCCCATCCGCACCGGCA
CCTGGACGGCGGCCGAGGTTGAAAGTGTGAACGATCGATTAAAGGATCTG
ATAACGACCAAGCCGATGATTTATGTGGTCAATTTGAGTCAGCAGCAATT
CATCAAGAAGCGTAGCAAGTGGCTTCCTCTGATTCAGGCATGGGTGGACG
CGCATGGTGGAGGGACGATCATTCCCATGTCTGTGGAGTTCGAGCAAAAA
TTGTGGGATTTGAGGGAGGACAAGGCGGCGACTGAGACTTTCCTGGCTGA
TGCCGAGGGGGCAAAGAGTGCCTTGCCACGTATGGTTAAAATTGGGTATA
AGCAGTTGCACCTTATTTATTTCTTCACGGCGGGGGACGTGGAGGTGCGT
TGTTGGACGGTGCAAGAGGGCGCCCTGGCTCCCCAAGCTGCAGGGGCAAT
TCACACGGATTTCGAACGAGGTTTTATCAAGGCGGAAGTGGTGTCGTTTG
ATGATTATAAGGCTCACAACAATGGGAAGGCGAGTATGGTGGATGTGAAG
GCGGCAGGGAAGTATCGGATTGAAGGAAAGGCGTATGTGGTCCAAGATGG
GGATATAATTCATTTTCAATTTAATGTAACGGCAGACAAGAAGAAAAAGT
AAGGGGCAAGTTTGGGGTAGGGAAGGAAGGGAGGTGAGAGATGGCGCGGA
TGGATCATGTGGGAGGTTTGAGAGTGATTCGAAGATATGCATAGGCAAGG
GAAGAGTTGAAAAAATGAAGAACAATTACAATAGTAGAAAGTTGCGAAAC
AATCCCCCTTGGTGCAATATCCTGCCTTGGTCTCCATTTAGATGTATTGG
CATGCGCGAGTGAGCGCGATTATTAACACCTTGGCAACGCAAAGCCAGGA
ATTGGATGTCAAAACGGTTCAAAGAAAATCGACCCATCTGGCGGCGTGCG
TTCATATCTCGCCCATAGCCCTCTACAAGCAC back to topprotein sequence of jgi.p|Nanoce1779_2|580255 >mRNA_2408-protein ID=mRNA_2408-protein|Name=jgi.p|Nanoce1779_2|580255|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MPPKAKEEKKDNVRFGRVRSNLKMGLVGLPNVGKSSLFNLLCNASAAASN
FAFCTIDPNESRCVVPDQRFDYLCDLHKPGNKIPAYLHVTDIAGLIKGAS
EGAGLGNAFLSHIAAVDGIFHLIRAFENDEIMHVDDSVDPVRDLETITSE
LCMKDLDTIERAIENERKEQKRVKMTKEMEAYFALLDKIKTMLEANHPIR
TGTWTAAEVESVNDRLKDLITTKPMIYVVNLSQQQFIKKRSKWLPLIQAW
VDAHGGGTIIPMSVEFEQKLWDLREDKAATETFLADAEGAKSALPRMVKI
GYKQLHLIYFFTAGDVEVRCWTVQEGALAPQAAGAIHTDFERGFIKAEVV
SFDDYKAHNNGKASMVDVKAAGKYRIEGKAYVVQDGDIIHFQFNVTADKK
KK* back to topmRNA from alignment at scaffold_5:265070..266907- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2408 ID=mRNA_2408|Name=jgi.p|Nanoce1779_2|580255|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at scaffold_5:265070..266907- (Nannochloropsis oceanica)
ACAGAAACACGCAGCAAATCAAATCCCTCCACGACTGAGCACGATGCCGC
CCAAGGCCAAGGAAGAGAAGAAGGACAACGTCCGTTTTGGCCGCGTCCGG
AGCAACCTAAAAATGGGGCTAGTGGGTCTACCCAACGTCGGCAAGTCCAG
TCTGTTCAATCTGCTCTGTAATGCCTCGGCGGCGGCCAGCAATTTCGCTT
TCTGGTAAGTGCTACAGGGTTGTGTGTATGGCATCTTTGCGAAGGCAGCA
AAACATTGCGTGACGCGCCTACCAACTCTTCCTTAATTCCCAAACTCACG
TCCTACCTATCCACCCTTCCCGTTAGTACCATCGACCCCAACGAATCCCG
CTGCGTCGTGCCTGACCAGCGCTTTGACTATCTCTGCGATTTACACAAGC
CTGGGAATAAGATTCCTGCTTATTTGCACGTGACGGACATCGCGGGTCTG
ATTAAGGGTGCCAGTGAAGGGGCGGGGTTGGGGAATGCTTTCCTCTCTCA
CATCGCCGCCGTCGACGGGATCTTCCACCTGATCCGTGCCTTCGAGAACG
ATGAGATTATGCATGTGGATGACTCGGTGGACCCTGTCCGTGATCTGGAG
ACAATCACGAGCGAGCTGTGCATGAAAGACTTGGACACAATCGAGCGAGC
GATCGAGAATGAGAGGAAGGAGCAAAAGCGCGTCAAGGTAAACAGATATA
TACAAGAGAAAAGATGCCTCTTGCACATATTTTCCGTCCCCCGCCGGCAT
CGCACACAATTATCGATACTAACCTCTCGTTCTGTGACTATGACATCTTC
TCTTCTTCTTCTTCCTCTTAGATGACCAAGGAAATGGAAGCTTACTTCGC
CCTTCTAGACAAAATTAAGACCATGCTCGAGGCCAACCACCCCATCCGCA
CCGGCACCTGGACGGCGGCCGAGGTTGAAAGTGTGAACGATCGATTAAAG
GATCTGATAACGACCAAGCCGATGATTTATGTGGTCAATTTGAGTCAGCA
GCAATTCATCAAGAAGCGTAGCAAGTGGCTTCCTCTGATTCAGGCATGGG
TGGACGCGCATGGTGGAGGGACGATCATTCCCATGTCTGTGGAGTTCGAG
CAAAAATTGTGGGATTTGAGGGAGGACAAGGCGGCGACTGAGACTTTCCT
GGCTGATGCCGAGGGGGCAAAGAGTGCCTTGCCACGTATGGTTAAAATTG
GGTATAAGCAGTTGCACCTTATTTATTTCTTCACGGCGGGGGACGTGGAG
GTGCGTTGTTGGACGGTGCAAGAGGGCGCCCTGGCTCCCCAAGCTGCAGG
GGCAATTCACACGGATTTCGAACGAGGTTTTATCAAGGCGGAAGTGGTGT
CGTTTGATGATTATAAGGCTCACAACAATGGGAAGGCGAGTATGGTGGAT
GTGAAGGCGGCAGGGAAGTATCGGATTGAAGGAAAGGCGTATGTGGTCCA
AGATGGGGATATAATTCATTTTCAATTTAATGTAACGGCAGACAAGAAGA
AAAAGTAAGGGGCAAGTTTGGGGTAGGGAAGGAAGGGAGGTGAGAGATGG
CGCGGATGGATCATGTGGGAGGTTTGAGAGTGATTCGAAGATATGCATAG
GCAAGGGAAGAGTTGAAAAAATGAAGAACAATTACAATAGTAGAAAGTTG
CGAAACAATCCCCCTTGGTGCAATATCCTGCCTTGGTCTCCATTTAGATG
TATTGGCATGCGCGAGTGAGCGCGATTATTAACACCTTGGCAACGCAAAG
CCAGGAATTGGATGTCAAAACGGTTCAAAGAAAATCGACCCATCTGGCGG
CGTGCGTTCATATCTCGCCCATAGCCCTCTACAAGCAC back to topCoding sequence (CDS) from alignment at scaffold_5:265070..266907- >mRNA_2408 ID=mRNA_2408|Name=jgi.p|Nanoce1779_2|580255|organism=Nannochloropsis oceanica|type=CDS|length=3627bp|location=Sequence derived from alignment at scaffold_5:265070..266907- (Nannochloropsis oceanica)
ATGACCAAGGAAATGGAAGCTTACTTCGCCCTTCTAGACAAAATTAAGAC
CATGCTCGAGGCCAACCACCCCATCCGCACCGGCACCTGGACGGCGGCCG
AGGTTGAAAGTGTGAACGATCGATTAAAGGATCTGATAACGACCAAGCCG
ATGATTTATGTGGTCAATTTGAGTCAGCAGCAATTCATCAAGAAGCGTAG
CAAGTGGCTTCCTCTGATTCAGGCATGGGTGGACGCGCATGGTGGAGGGA
CGATCATTCCCATGTCTGTGGAGTTCGAGCAAAAATTGTGGGATTTGAGG
GAGGACAAGGCGGCGACTGAGACTTTCCTGGCTGATGCCGAGGGGGCAAA
GAGTGCCTTGCCACGTATGGTTAAAATTGGGTATAAGCAGTTGCACCTTA
TTTATTTCTTCACGGCGGGGGACGTGGAGGTGCGTTGTTGGACGGTGCAA
GAGGGCGCCCTGGCTCCCCAAGCTGCAGGGGCAATTCACACGGATTTCGA
ACGAGGTTTTATCAAGGCGGAAGTGGTGTCGTTTGATGATTATAAGGCTC
ACAACAATGGGAAGGCGAGTATGGTGGATGTGAAGGCGGCAGGGAAGTAT
CGGATTGAAGGAAAGGCGTATGTGGTCCAAGATGGGGATATAATTCATTT
TCAATTTAATGTAACGGCAGACAAGAAGAAAAAGTAATACCATCGACCCC
AACGAATCCCGCTGCGTCGTGCCTGACCAGCGCTTTGACTATCTCTGCGA
TTTACACAAGCCTGGGAATAAGATTCCTGCTTATTTGCACGTGACGGACA
TCGCGGGTCTGATTAAGGGTGCCAGTGAAGGGGCGGGGTTGGGGAATGCT
TTCCTCTCTCACATCGCCGCCGTCGACGGGATCTTCCACCTGATCCGTGC
CTTCGAGAACGATGAGATTATGCATGTGGATGACTCGGTGGACCCTGTCC
GTGATCTGGAGACAATCACGAGCGAGCTGTGCATGAAAGACTTGGACACA
ATCGAGCGAGCGATCGAGAATGAGAGGAAGGAGCAAAAGCGCGTCAAGAT
GCCGCCCAAGGCCAAGGAAGAGAAGAAGGACAACGTCCGTTTTGGCCGCG
TCCGGAGCAACCTAAAAATGGGGCTAGTGGGTCTACCCAACGTCGGCAAG
TCCAGTCTGTTCAATCTGCTCTGTAATGCCTCGGCGGCGGCCAGCAATTT
CGCTTTCTGATGACCAAGGAAATGGAAGCTTACTTCGCCCTTCTAGACAA
AATTAAGACCATGCTCGAGGCCAACCACCCCATCCGCACCGGCACCTGGA
CGGCGGCCGAGGTTGAAAGTGTGAACGATCGATTAAAGGATCTGATAACG
ACCAAGCCGATGATTTATGTGGTCAATTTGAGTCAGCAGCAATTCATCAA
GAAGCGTAGCAAGTGGCTTCCTCTGATTCAGGCATGGGTGGACGCGCATG
GTGGAGGGACGATCATTCCCATGTCTGTGGAGTTCGAGCAAAAATTGTGG
GATTTGAGGGAGGACAAGGCGGCGACTGAGACTTTCCTGGCTGATGCCGA
GGGGGCAAAGAGTGCCTTGCCACGTATGGTTAAAATTGGGTATAAGCAGT
TGCACCTTATTTATTTCTTCACGGCGGGGGACGTGGAGGTGCGTTGTTGG
ACGGTGCAAGAGGGCGCCCTGGCTCCCCAAGCTGCAGGGGCAATTCACAC
GGATTTCGAACGAGGTTTTATCAAGGCGGAAGTGGTGTCGTTTGATGATT
ATAAGGCTCACAACAATGGGAAGGCGAGTATGGTGGATGTGAAGGCGGCA
GGGAAGTATCGGATTGAAGGAAAGGCGTATGTGGTCCAAGATGGGGATAT
AATTCATTTTCAATTTAATGTAACGGCAGACAAGAAGAAAAAGTAATACC
ATCGACCCCAACGAATCCCGCTGCGTCGTGCCTGACCAGCGCTTTGACTA
TCTCTGCGATTTACACAAGCCTGGGAATAAGATTCCTGCTTATTTGCACG
TGACGGACATCGCGGGTCTGATTAAGGGTGCCAGTGAAGGGGCGGGGTTG
GGGAATGCTTTCCTCTCTCACATCGCCGCCGTCGACGGGATCTTCCACCT
GATCCGTGCCTTCGAGAACGATGAGATTATGCATGTGGATGACTCGGTGG
ACCCTGTCCGTGATCTGGAGACAATCACGAGCGAGCTGTGCATGAAAGAC
TTGGACACAATCGAGCGAGCGATCGAGAATGAGAGGAAGGAGCAAAAGCG
CGTCAAGATGCCGCCCAAGGCCAAGGAAGAGAAGAAGGACAACGTCCGTT
TTGGCCGCGTCCGGAGCAACCTAAAAATGGGGCTAGTGGGTCTACCCAAC
GTCGGCAAGTCCAGTCTGTTCAATCTGCTCTGTAATGCCTCGGCGGCGGC
CAGCAATTTCGCTTTCTGATGACCAAGGAAATGGAAGCTTACTTCGCCCT
TCTAGACAAAATTAAGACCATGCTCGAGGCCAACCACCCCATCCGCACCG
GCACCTGGACGGCGGCCGAGGTTGAAAGTGTGAACGATCGATTAAAGGAT
CTGATAACGACCAAGCCGATGATTTATGTGGTCAATTTGAGTCAGCAGCA
ATTCATCAAGAAGCGTAGCAAGTGGCTTCCTCTGATTCAGGCATGGGTGG
ACGCGCATGGTGGAGGGACGATCATTCCCATGTCTGTGGAGTTCGAGCAA
AAATTGTGGGATTTGAGGGAGGACAAGGCGGCGACTGAGACTTTCCTGGC
TGATGCCGAGGGGGCAAAGAGTGCCTTGCCACGTATGGTTAAAATTGGGT
ATAAGCAGTTGCACCTTATTTATTTCTTCACGGCGGGGGACGTGGAGGTG
CGTTGTTGGACGGTGCAAGAGGGCGCCCTGGCTCCCCAAGCTGCAGGGGC
AATTCACACGGATTTCGAACGAGGTTTTATCAAGGCGGAAGTGGTGTCGT
TTGATGATTATAAGGCTCACAACAATGGGAAGGCGAGTATGGTGGATGTG
AAGGCGGCAGGGAAGTATCGGATTGAAGGAAAGGCGTATGTGGTCCAAGA
TGGGGATATAATTCATTTTCAATTTAATGTAACGGCAGACAAGAAGAAAA
AGTAATACCATCGACCCCAACGAATCCCGCTGCGTCGTGCCTGACCAGCG
CTTTGACTATCTCTGCGATTTACACAAGCCTGGGAATAAGATTCCTGCTT
ATTTGCACGTGACGGACATCGCGGGTCTGATTAAGGGTGCCAGTGAAGGG
GCGGGGTTGGGGAATGCTTTCCTCTCTCACATCGCCGCCGTCGACGGGAT
CTTCCACCTGATCCGTGCCTTCGAGAACGATGAGATTATGCATGTGGATG
ACTCGGTGGACCCTGTCCGTGATCTGGAGACAATCACGAGCGAGCTGTGC
ATGAAAGACTTGGACACAATCGAGCGAGCGATCGAGAATGAGAGGAAGGA
GCAAAAGCGCGTCAAGATGCCGCCCAAGGCCAAGGAAGAGAAGAAGGACA
ACGTCCGTTTTGGCCGCGTCCGGAGCAACCTAAAAATGGGGCTAGTGGGT
CTACCCAACGTCGGCAAGTCCAGTCTGTTCAATCTGCTCTGTAATGCCTC
GGCGGCGGCCAGCAATTTCGCTTTCTG back to top
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