jgi.p|Nanoce1779_2|580045, mRNA_2347 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580045
Unique NamemRNA_2347
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length342
Alignment locationscaffold_5:114582..114923 -

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Properties
Property NameValue
TranscriptId580131
TrackFilteredModels2
ProteinId580045
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:114582..114923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580045gene_2347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2347CDS_2347Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580045mRNA_2347-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2347 ID=mRNA_2347|Name=jgi.p|Nanoce1779_2|580045|organism=Nannochloropsis oceanica|type=mRNA|length=342bp
ATGAAAGGGGAGGCGGACGGATGGGGGGCGCGAGGAATGGTGTTGGGTAA
ATGCTCCTTCTTCCGCTTTTTGCTGGCGGGGGCGGCGGGGGACGAAATGG
GGGGGGAAGACCCATTGCTGGCACCATGTGCGGTAGGAGGTACAGGCGCT
GACGCACCCGGGGCTGAGGTTGAGGAATTAATTGGAGTAGAAGTAGAGGT
GGACGGTGCCTTGGATTTGCGGGGCTTGCGCTTTTTCTTTGCGCTGGTCT
CGGAGTGCGCAGGGGTAAAGGAGGAGGCCGAGTCCGGCAGGAAGGGGAAG
AAATCATCGAACATCATCGGCTCGAGAGAGCGTCAGGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|580045

>mRNA_2347-protein ID=mRNA_2347-protein|Name=jgi.p|Nanoce1779_2|580045|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MKGEADGWGARGMVLGKCSFFRFLLAGAAGDEMGGEDPLLAPCAVGGTGA
DAPGAEVEELIGVEVEVDGALDLRGLRFFFALVSECAGVKEEAESGRKGK
KSSNIIGSRERQAC
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mRNA from alignment at scaffold_5:114582..114923-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2347 ID=mRNA_2347|Name=jgi.p|Nanoce1779_2|580045|organism=Nannochloropsis oceanica|type=mRNA|length=342bp|location=Sequence derived from alignment at scaffold_5:114582..114923- (Nannochloropsis oceanica)
ATGAAAGGGGAGGCGGACGGATGGGGGGCGCGAGGAATGGTGTTGGGTAA
ATGCTCCTTCTTCCGCTTTTTGCTGGCGGGGGCGGCGGGGGACGAAATGG
GGGGGGAAGACCCATTGCTGGCACCATGTGCGGTAGGAGGTACAGGCGCT
GACGCACCCGGGGCTGAGGTTGAGGAATTAATTGGAGTAGAAGTAGAGGT
GGACGGTGCCTTGGATTTGCGGGGCTTGCGCTTTTTCTTTGCGCTGGTCT
CGGAGTGCGCAGGGGTAAAGGAGGAGGCCGAGTCCGGCAGGAAGGGGAAG
AAATCATCGAACATCATCGGCTCGAGAGAGCGTCAGGCCTGT
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Coding sequence (CDS) from alignment at scaffold_5:114582..114923-

>mRNA_2347 ID=mRNA_2347|Name=jgi.p|Nanoce1779_2|580045|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_5:114582..114923- (Nannochloropsis oceanica)
ATGAAAGGGGAGGCGGACGGATGGGGGGCGCGAGGAATGGTGTTGGGTAA
ATGCTCCTTCTTCCGCTTTTTGCTGGCGGGGGCGGCGGGGGACGAAATGG
GGGGGGAAGACCCATTGCTGGCACCATGTGCGGTAGGAGGTACAGGCGCT
GACGCACCCGGGGCTGAGGTTGAGGAATTAATTGGAGTAGAAGTAGAGGT
GGACGGTGCCTTGGATTTGCGGGGCTTGCGCTTTTTCTTTGCGCTGGTCT
CGGAGTGCGCAGGGGTAAAGGAGGAGGCCGAGTCCGGCAGGAAGGGGAAG
AAATCATCGAACATCATCGGCTCGAGAGAGCGTCAGGCCTGT
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Synonyms
Publications