jgi.p|Nanoce1779_2|580919, mRNA_2608 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580919
Unique NamemRNA_2608
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1109
Alignment locationscaffold_5:759608..760716 +

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Properties
Property NameValue
TranscriptId581005
TrackFilteredModels2
ProteinId580919
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:759608..760716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580919gene_2608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580919mRNA_2608-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2608CDS_2608Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2608 ID=mRNA_2608|Name=jgi.p|Nanoce1779_2|580919|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
ACAGAGAATGATGTCCAAGAGCCTCATGCTGCTTAGCCTGCTGAGCCCCG
TGGCGTTTGCTTTCGTCTCTCGCGCACCGGCCAGTACCCTCTCCCGCGCC
GCTTCTACGCACGCCCGCAAGAACCTGGTCAAGGCCTCTGCTGTGGACTA
CACGACTGCCTTCATGTTCCCCGGGCAAGGCGCGCAATACGTGGGCATGG
GTGCTCAGGTTGCCGAGGAGGTACCCGCTGCTAAGGCTTTGTTTGAGAAA
GCTAGCGCGATTCTGGGGTACGATTTGCTTGAGCGGTCGGTAAACGGGCC
TAAGGACCTGTTGGACTCGACGGCGGTGAGCCAGCCTGCCATTTTTGTGA
CGTCCGCGGCGGCGGTGGAGAAACTCCGCGCAACCGAAGGCGAAGCGGCC
GTCAATACCGCTACGGTGGCCATGGGGTTATCTTTGGGGGAATACACAGC
TTTGTGGTACGCGGGTGCATTTTCGTTCGAGGACGGGGTGCGATTGACCA
AAGCGCGCGGAGAGGCCATGCAAGCGGCGGCCGATCTGGTTGACACAACC
ATGGTGAGCGTCATTGGCTTGGATCCGGATAAAGTGGCCGAACTCTGTTC
GGCAGCGTCAAAGAAGTCGGGTGAAAAAATTCAAATAGCCAACTACTTGT
GCCCGGGAAATTATGCCGTATCTGGTAGCTTGAAAGCGGCCCAGGTCTTG
GAGGAGATCGCCAAGCCTGACTTTGGGGCGAGAATGACTGTCCGTCTCGC
TGTGGCCGGAGCGTTCCATACTGAATATATGGCACCAGCAGTGGAGAAGC
TGAAAGAGGTATTGGCCAAGACTGAGTTCAAGACGCCGAGGATTCCTGTG
ATTTCGAATGTGGATGGGAAAGCGCATTCGGACCCAGAAGAGATCAAGGC
GATTCTGGCGAGGCAAGTCACCTCGCCCGTGCAGTGGGAGACGACGATGA
ATGATTTGGTTAAGGGTGGGTTGGAGACGGGGTATGAGTTGGGGCCCGGG
AAGGTGTGTGCCGGAATTATGAAGAGGATTGATAGGAGTGCAAAGATGGT
AAACATTGAAGCGTAAGTTAGGGAGGGAGGCGAAGAAGGGAGGGAGAGAG
GGAGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|580919

>mRNA_2608-protein ID=mRNA_2608-protein|Name=jgi.p|Nanoce1779_2|580919|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MMSKSLMLLSLLSPVAFAFVSRAPASTLSRAASTHARKNLVKASAVDYTT
AFMFPGQGAQYVGMGAQVAEEVPAAKALFEKASAILGYDLLERSVNGPKD
LLDSTAVSQPAIFVTSAAAVEKLRATEGEAAVNTATVAMGLSLGEYTALW
YAGAFSFEDGVRLTKARGEAMQAAADLVDTTMVSVIGLDPDKVAELCSAA
SKKSGEKIQIANYLCPGNYAVSGSLKAAQVLEEIAKPDFGARMTVRLAVA
GAFHTEYMAPAVEKLKEVLAKTEFKTPRIPVISNVDGKAHSDPEEIKAIL
ARQVTSPVQWETTMNDLVKGGLETGYELGPGKVCAGIMKRIDRSAKMVNI
EA*
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mRNA from alignment at scaffold_5:759608..760716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2608 ID=mRNA_2608|Name=jgi.p|Nanoce1779_2|580919|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at scaffold_5:759608..760716+ (Nannochloropsis oceanica)
ACAGAGAATGATGTCCAAGAGCCTCATGCTGCTTAGCCTGCTGAGCCCCG
TGGCGTTTGCTTTCGTCTCTCGCGCACCGGCCAGTACCCTCTCCCGCGCC
GCTTCTACGCACGCCCGCAAGAACCTGGTCAAGGCCTCTGCTGTGGACTA
CACGACTGCCTTCATGTTCCCCGGGCAAGGCGCGCAATACGTGGGCATGG
GTGCTCAGGTTGCCGAGGAGGTACCCGCTGCTAAGGCTTTGTTTGAGAAA
GCTAGCGCGATTCTGGGGTACGATTTGCTTGAGCGGTCGGTAAACGGGCC
TAAGGACCTGTTGGACTCGACGGCGGTGAGCCAGCCTGCCATTTTTGTGA
CGTCCGCGGCGGCGGTGGAGAAACTCCGCGCAACCGAAGGCGAAGCGGCC
GTCAATACCGCTACGGTGGCCATGGGGTTATCTTTGGGGGAATACACAGC
TTTGTGGTACGCGGGTGCATTTTCGTTCGAGGACGGGGTGCGATTGACCA
AAGCGCGCGGAGAGGCCATGCAAGCGGCGGCCGATCTGGTTGACACAACC
ATGGTGAGCGTCATTGGCTTGGATCCGGATAAAGTGGCCGAACTCTGTTC
GGCAGCGTCAAAGAAGTCGGGTGAAAAAATTCAAATAGCCAACTACTTGT
GCCCGGGAAATTATGCCGTATCTGGTAGCTTGAAAGCGGCCCAGGTCTTG
GAGGAGATCGCCAAGCCTGACTTTGGGGCGAGAATGACTGTCCGTCTCGC
TGTGGCCGGAGCGTTCCATACTGAATATATGGCACCAGCAGTGGAGAAGC
TGAAAGAGGTATTGGCCAAGACTGAGTTCAAGACGCCGAGGATTCCTGTG
ATTTCGAATGTGGATGGGAAAGCGCATTCGGACCCAGAAGAGATCAAGGC
GATTCTGGCGAGGCAAGTCACCTCGCCCGTGCAGTGGGAGACGACGATGA
ATGATTTGGTTAAGGGTGGGTTGGAGACGGGGTATGAGTTGGGGCCCGGG
AAGGTGTGTGCCGGAATTATGAAGAGGATTGATAGGAGTGCAAAGATGGT
AAACATTGAAGCGTAAGTTAGGGAGGGAGGCGAAGAAGGGAGGGAGAGAG
GGAGAGGGA
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Coding sequence (CDS) from alignment at scaffold_5:759608..760716+

>mRNA_2608 ID=mRNA_2608|Name=jgi.p|Nanoce1779_2|580919|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_5:759608..760716+ (Nannochloropsis oceanica)
ATGATGTCCAAGAGCCTCATGCTGCTTAGCCTGCTGAGCCCCGTGGCGTT
TGCTTTCGTCTCTCGCGCACCGGCCAGTACCCTCTCCCGCGCCGCTTCTA
CGCACGCCCGCAAGAACCTGGTCAAGGCCTCTGCTGTGGACTACACGACT
GCCTTCATGTTCCCCGGGCAAGGCGCGCAATACGTGGGCATGGGTGCTCA
GGTTGCCGAGGAGGTACCCGCTGCTAAGGCTTTGTTTGAGAAAGCTAGCG
CGATTCTGGGGTACGATTTGCTTGAGCGGTCGGTAAACGGGCCTAAGGAC
CTGTTGGACTCGACGGCGGTGAGCCAGCCTGCCATTTTTGTGACGTCCGC
GGCGGCGGTGGAGAAACTCCGCGCAACCGAAGGCGAAGCGGCCGTCAATA
CCGCTACGGTGGCCATGGGGTTATCTTTGGGGGAATACACAGCTTTGTGG
TACGCGGGTGCATTTTCGTTCGAGGACGGGGTGCGATTGACCAAAGCGCG
CGGAGAGGCCATGCAAGCGGCGGCCGATCTGGTTGACACAACCATGGTGA
GCGTCATTGGCTTGGATCCGGATAAAGTGGCCGAACTCTGTTCGGCAGCG
TCAAAGAAGTCGGGTGAAAAAATTCAAATAGCCAACTACTTGTGCCCGGG
AAATTATGCCGTATCTGGTAGCTTGAAAGCGGCCCAGGTCTTGGAGGAGA
TCGCCAAGCCTGACTTTGGGGCGAGAATGACTGTCCGTCTCGCTGTGGCC
GGAGCGTTCCATACTGAATATATGGCACCAGCAGTGGAGAAGCTGAAAGA
GGTATTGGCCAAGACTGAGTTCAAGACGCCGAGGATTCCTGTGATTTCGA
ATGTGGATGGGAAAGCGCATTCGGACCCAGAAGAGATCAAGGCGATTCTG
GCGAGGCAAGTCACCTCGCCCGTGCAGTGGGAGACGACGATGAATGATTT
GGTTAAGGGTGGGTTGGAGACGGGGTATGAGTTGGGGCCCGGGAAGGTGT
GTGCCGGAATTATGAAGAGGATTGATAGGAGTGCAAAGATGGTAAACATT
GAAGCGTAA
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Synonyms
Publications