jgi.p|Nanoce1779_2|581470, mRNA_2771 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581470
Unique Name	mRNA_2771
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	968
Alignment location	scaffold_5:1150411..1151378 -

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Properties


Property Name	Value
TranscriptId	581556
Track	FilteredModels2
ProteinId	581470

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1150411..1151378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581470	gene_2771	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581470	mRNA_2771-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2771	CDS_2771	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1150411..1151378-
coding sequence from alignment at scaffold_5:1150411..1151378-

mRNA sequence

>mRNA_2771 ID=mRNA_2771|Name=jgi.p|Nanoce1779_2|581470|organism=Nannochloropsis oceanica|type=mRNA|length=968bp
CAAGCCTTGCCAATGACATGATGGCATCTGCGTCTATCATAATGTGAGCA
CCAAAATGAGCCCGCCCCGCATGACGGGGTAGCTGCCGGAATCAGGCCAC
TGGCCCGACAGTCATACTTGGAATGAATGCCGCAACCATAAAGGTTTGTT
GCCTTTCCTGTACCGGGCGTCCTGCAGACCGCTTCTATCGTGGCCAATCA
CTTTGTTCTTCCTATTTTTTCATTTGATTAGATGCCTCACCCCCCTTTCT
CCCCTCATTTGTAAGTGGAACAAGTAAATATGACCCGATGTGATGATGCT
AGAGCTCGTTATCGAGCCTTGCGAAGTCCTAGTCTTTGAGTCCCATGGTA
AAGAGAGCGGCATCTTCATCCTCTCCATCTAGGAAAAAAAGACGAGGCCG
ACACGGTATCACTCTCCTCTGCGTTAGAGAGGCGTTTTGACACGAGCCCG
TTCGTCTGGATGGCGATTTCTCACGTGGTCGTCCGCCTGCGAGTTTCCCT
TGATCTACTCGTTGCACCCCTTACAATATTAGCCATTCCTCCTATCCTCA
TTAAAGGGCTTGCACAAGAGAATGGAGCGCTATGCAAAAACTTTCTCCCT
CTCCATCCGTTGGGCTGTGGCTTACAGGATGAGATCTCGGGCGCGCTTGG
CCCGTTCCTCCGCTTATGGCTCCTAAGCAGCCACTGGCAGGCTCCTGGCA
GCGTTGCTAGTGGTGGACGAGGCACTAGAGCCTTCTTCTAACAACAAGTC
AGAAATTCTGTAAGTGTGTGCTTGTGTGTGTGAGTGTGTATTTTATCTAT
GAGCAAACAGTTGTGGTACTGGCCTCTAGAAGCAAGAAGTTCAAACGTCA
ACCCCACGTCGACGTGACGACACGGACGTCAACATGGGGTTGACGTGACG
TGACGTTGACGTGACGTGTCGACGTTTTACGCGTCAAACCCAACTCTGGT
CCAGAGTGGCACTCGCTC

protein sequence of jgi.p|Nanoce1779_2|581470

>mRNA_2771-protein ID=mRNA_2771-protein|Name=jgi.p|Nanoce1779_2|581470|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MAISHVVVRLRVSLDLLVAPLTILAIPPILIKGLAQENGALCKNFLPLHP
LGCGLQDEISGALGPFLRLWLLSSHWQAPGSVASGGRGTRAFF*

mRNA from alignment at scaffold_5:1150411..1151378-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2771 ID=mRNA_2771|Name=jgi.p|Nanoce1779_2|581470|organism=Nannochloropsis oceanica|type=mRNA|length=968bp|location=Sequence derived from alignment at scaffold_5:1150411..1151378- (Nannochloropsis oceanica)
CAAGCCTTGCCAATGACATGATGGCATCTGCGTCTATCATAATGTGAGCA
CCAAAATGAGCCCGCCCCGCATGACGGGGTAGCTGCCGGAATCAGGCCAC
TGGCCCGACAGTCATACTTGGAATGAATGCCGCAACCATAAAGGTTTGTT
GCCTTTCCTGTACCGGGCGTCCTGCAGACCGCTTCTATCGTGGCCAATCA
CTTTGTTCTTCCTATTTTTTCATTTGATTAGATGCCTCACCCCCCTTTCT
CCCCTCATTTGTAAGTGGAACAAGTAAATATGACCCGATGTGATGATGCT
AGAGCTCGTTATCGAGCCTTGCGAAGTCCTAGTCTTTGAGTCCCATGGTA
AAGAGAGCGGCATCTTCATCCTCTCCATCTAGGAAAAAAAGACGAGGCCG
ACACGGTATCACTCTCCTCTGCGTTAGAGAGGCGTTTTGACACGAGCCCG
TTCGTCTGGATGGCGATTTCTCACGTGGTCGTCCGCCTGCGAGTTTCCCT
TGATCTACTCGTTGCACCCCTTACAATATTAGCCATTCCTCCTATCCTCA
TTAAAGGGCTTGCACAAGAGAATGGAGCGCTATGCAAAAACTTTCTCCCT
CTCCATCCGTTGGGCTGTGGCTTACAGGATGAGATCTCGGGCGCGCTTGG
CCCGTTCCTCCGCTTATGGCTCCTAAGCAGCCACTGGCAGGCTCCTGGCA
GCGTTGCTAGTGGTGGACGAGGCACTAGAGCCTTCTTCTAACAACAAGTC
AGAAATTCTGTAAGTGTGTGCTTGTGTGTGTGAGTGTGTATTTTATCTAT
GAGCAAACAGTTGTGGTACTGGCCTCTAGAAGCAAGAAGTTCAAACGTCA
ACCCCACGTCGACGTGACGACACGGACGTCAACATGGGGTTGACGTGACG
TGACGTTGACGTGACGTGTCGACGTTTTACGCGTCAAACCCAACTCTGGT
CCAGAGTGGCACTCGCTC

Coding sequence (CDS) from alignment at scaffold_5:1150411..1151378-

>mRNA_2771 ID=mRNA_2771|Name=jgi.p|Nanoce1779_2|581470|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_5:1150411..1151378- (Nannochloropsis oceanica)
ATGGCGATTTCTCACGTGGTCGTCCGCCTGCGAGTTTCCCTTGATCTACT
CGTTGCACCCCTTACAATATTAGCCATTCCTCCTATCCTCATTAAAGGGC
TTGCACAAGAGAATGGAGCGCTATGCAAAAACTTTCTCCCTCTCCATCCG
TTGGGCTGTGGCTTACAGGATGAGATCTCGGGCGCGCTTGGCCCGTTCCT
CCGCTTATGGCTCCTAAGCAGCCACTGGCAGGCTCCTGGCAGCGTTGCTA
GTGGTGGACGAGGCACTAGAGCCTTCTTCTAA

Synonyms

Publications