jgi.p|Nanoce1779_2|581634, mRNA_2798 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581634
Unique NamemRNA_2798
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length905
Alignment locationscaffold_5:1215307..1216552 -

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Properties
Property NameValue
TranscriptId581720
TrackFilteredModels2
ProteinId581634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1215307..1216552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581634gene_2798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581634mRNA_2798-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2798CDS_2798Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2798 ID=mRNA_2798|Name=jgi.p|Nanoce1779_2|581634|organism=Nannochloropsis oceanica|type=mRNA|length=905bp
ACTACTCTCTCCAAGGGTCGATCCCCTTCTTCCCTCCTTCCCTCCCTCCC
TCCCTCCCTCCCTCAGATGGTCCCTCCACCTAGTAATGGCAGCCACGTAG
TTCTCTCCCTTCCTCCCTCCCTTCCTTCCTCCCCCTAGTGGTGGTGGTGG
CCGTGGTGCTGCTCCTTGTGCGCCGTCTTCTTCTCCTCCATCTTGAAGAA
GGGGAGCTTGGCAGGATCGTCCAGCTCGGACAAGCCCTTCTTCGCGATCA
AGTGCCCGTGGGCGTCAAATGTCAGGAAGGTATTGTGCACCGGCTCCTTG
ATAGCCACGCATCCGGGGTGGTCGAGATCCTCCTTGATAAAGATGAAATG
TGCCTCGTGGGATCGGTCCTTGGACATGTGGATCTGTCCGTGGCTGTTAA
TGCTCAGGTAGTGCCCGTTGTGCGCCTTGAGGGCCACGTGATCCTTGGGC
AGATGTTCCACAGTCCAGACGGCGTGGTCACCACCGGCAGTATCGGCTTT
GACCTGAAAGGGAAGGGAGGGAAGGAGGAAAGAGGGAAGATGGCGTGCGT
AAGGAGTCCCGACGACATTGGCCTTGACATGGGGGGGGGGAAAGGGTCAC
GGAAGGGTGAAGGGAGGGAGATGGAGTGGCAACATAAGTGAGGATAGAAC
ATTGCTGCATGATGTGAACGCATCATCGTTGCCCCTCGAGTACCTATTCG
TTCACCATATGGCAGTACCCTTTCCTCCGTCTCCCCCCTCTTTCCTCCTT
TGCACTCACATGATCGGAAGCGACAGACAGATAGGGCGTCACGTCGCTAT
GGACCTTGCTGTAAACCTGGAAAGTGGCGTGCACAGCGTTGTTACCCGTC
ATGATGATGATGAAGTAGGAGGGTGGTTTGGAAGCTTGAGGAAGCCGTTT
CCTGT
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protein sequence of jgi.p|Nanoce1779_2|581634

>mRNA_2798-protein ID=mRNA_2798-protein|Name=jgi.p|Nanoce1779_2|581634|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MCLVGSVLGHVDLSVAVNAQVVPVVRLEGHVILGQMFHSPDGVVTTGSIG
FDLKGKGGKEERGKMACVRSPDDIGLDMGGGKGSRKGEGREMEWQH
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mRNA from alignment at scaffold_5:1215307..1216552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2798 ID=mRNA_2798|Name=jgi.p|Nanoce1779_2|581634|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp|location=Sequence derived from alignment at scaffold_5:1215307..1216552- (Nannochloropsis oceanica)
ACTACTCTCTCCAAGGGTCGATCCCCTTCTTCCCTCCTTCCCTCCCTCCC
TCCCTCCCTCCCTCAGATGGTCCCTCCACCTAGTAATGGCAGCCACGTAG
TTCTCTCCCTTCCTCCCTCCCTTCCTTCCTCCCCCTAGTGGTGGTGGTGG
CCGTGGTGCTGCTCCTTGTGCGCCGTCTTCTTCTCCTCCATCTTGAAGAA
GGGGAGCTTGGCAGGATCGTCCAGCTCGGACAAGCCCTTCTTCGCGATCA
AGTGCCCGTGGGCGTCAAATCTAGGGGAAAGAGAGGGTAATTGGAGGGAG
GGAGGGAGGGGGGGAGGAGGGGGGACAACGGTAAGAAGATGTAGAAACGC
ACGGGAGAGGTTCCACACCTTTCTCGTTCCCTTCCTCCCTCCCATCCTCC
TTACGTCAGGAAGGTATTGTGCACCGGCTCCTTGATAGCCACGCATCCGG
GGTGGTCGAGATCCTCCTTGATAAAGATGAAATGTGCCTCGTGGGATCGG
TCCTTGGACATGTGGACTGGAGGGAGGGAGAGAAGGAGAGAAGGAGGGAG
GGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGAGTGAGGCACTG
TTGCAAGGACAGGAGTCTGTTGTTGACTCTTCGCATTGCTTGTGAAATAA
GATATTGGAGGACGAGAAGGTACTTCTTCCCTCTCTCCCTTCCTCCCCTT
CTCCCTTCCTCGCTGTCACTCACTCTGTCCGTGGCTGTTAATGCTCAGGT
AGTGCCCGTTGTGCGCCTTGAGGGCCACGTGATCCTTGGGCAGATGTTCC
ACAGTCCAGACGGCGTGGTCACCACCGGCAGTATCGGCTTTGACCTGAAA
GGGAAGGGAGGGAAGGAGGAAAGAGGGAAGATGGCGTGCGTAAGGAGTCC
CGACGACATTGGCCTTGACATGGGGGGGGGGAAAGGGTCACGGAAGGGTG
AAGGGAGGGAGATGGAGTGGCAACATAAGTGAGGATAGAACATTGCTGCA
TGATGTGAACGCATCATCGTTGCCCCTCGAGTACCTATTCGTTCACCATA
TGGCAGTACCCTTTCCTCCGTCTCCCCCCTCTTTCCTCCTTTGCACTCAC
ATGATCGGAAGCGACAGACAGATAGGGCGTCACGTCGCTATGGACCTTGC
TGTAAACCTGGAAAGTGGCGTGCACAGCGTTGTTACCCGTCATGATGATG
ATGAAGTAGGAGGGTGGTTTGGAAGCTTGAGGAAGCCGTTTCCTGT
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Coding sequence (CDS) from alignment at scaffold_5:1215307..1216552-

>mRNA_2798 ID=mRNA_2798|Name=jgi.p|Nanoce1779_2|581634|organism=Nannochloropsis oceanica|type=CDS|length=580bp|location=Sequence derived from alignment at scaffold_5:1215307..1216552- (Nannochloropsis oceanica)
TCTGTCCGTGGCTGTTAATGCTCAGGTAGTGCCCGTTGTGCGCCTTGAGG
GCCACGTGATCCTTGGGCAGATGTTCCACAGTCCAGACGGCGTGGTCACC
ACCGGCAGTATCGGCTTTGACCTGAAAGGGAAGGGAGGGAAGGAGGAAAG
AGGGAAGATGGCGTGCGTAAGGAGTCCCGACGACATTGGCCTTGACATGG
GGGGGGGGAAAGGGTCACGGAAGGGTGAAGGGAGGGAGATGGAGTGGCAA
CATAAATGTGCCTCGTGGGATCGGTCCTTGGACATGTGGATCTGTCCGTG
GCTGTTAATGCTCAGGTAGTGCCCGTTGTGCGCCTTGAGGGCCACGTGAT
CCTTGGGCAGATGTTCCACAGTCCAGACGGCGTGGTCACCACCGGCAGTA
TCGGCTTTGACCTGAAAGGGAAGGGAGGGAAGGAGGAAAGAGGGAAGATG
GCGTGCGTAAGGAGTCCCGACGACATTGGCCTTGACATGGGGGGGGGGAA
AGGGTCACGGAAGGGTGAAGGGAGGGAGATGGAGTGGCAACATAAATGTG
CCTCGTGGGATCGGTCCTTGGACATGTGGA
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Synonyms
Publications