jgi.p|Nanoce1779_2|661896, mRNA_2615 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|661896
Unique Name	mRNA_2615
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	933
Alignment location	scaffold_5:774533..776677 -

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Properties


Property Name	Value
TranscriptId	661982
Track	FilteredModels2
ProteinId	661896

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:774533..776677 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661896	gene_2615	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661896	mRNA_2615-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2615	CDS_2615	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:774533..776677-
coding sequence from alignment at scaffold_5:774533..776677-

mRNA sequence

>mRNA_2615 ID=mRNA_2615|Name=jgi.p|Nanoce1779_2|661896|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
TCTCCTCCTTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAA
CACGAAGACAAAGCAACTGGATTAACAATGAGCGAGAGCAACGCCGCGCC
GGCCTCTGAACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGG
TTATTCGGTTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAG
ACATTGGTGGCGGGTGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGA
TTATCAAGACTTGAGCAAATATGATATTTCCCGGGAAATTCGGGACAAGC
TGGGTCGCGTGTTGGACAAATTGCGTGTTAACGGCACTATCTTTATCTCT
GGGCTCAGTCCCTCAACAACTGAAGCCGAGATTGCGGAATACTTCGGCCA
GATTGGTATTGTCAAGAAGATGAAGCAAAAGCGAGGCTACCCGGACCAAT
GGCCTTACAAAATCAAAATGTACCGCGACGAATCGGGTAAAAGCAAAGGC
GAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGATCTC
ATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGTATGG
TGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTCCGGA
GGAGGGGGGGGTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAGGGG
CGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCTATG
GAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGAGGA
AGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGATAG
GGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTATTAAATACACACAA
CAGCCTTTTTACGGAAAAAGGTCGAGTAAATGA

protein sequence of jgi.p|Nanoce1779_2|661896

>mRNA_2615-protein ID=mRNA_2615-protein|Name=jgi.p|Nanoce1779_2|661896|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MSESNAAPASEPSAPAEPAEDPSEVIRFLTHLSPTYAEPAKTLVAGGVET
VADLAGLDYQDLSKYDISREIRDKLGRVLDKLRVNGTIFISGLSPSTTEA
EIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEP
NSAHASISFFHGTELAGKTLKVSMVSYGEDEEGGSGGGYSGGGGGYGGGG
GGYGGGRGGGGGYGGGRGGGGGGYGRDDRGGGGGYRGGGGGRGGGGGYGG
GYGRYDDRGGRRGDRRDRPY*

mRNA from alignment at scaffold_5:774533..776677-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2615 ID=mRNA_2615|Name=jgi.p|Nanoce1779_2|661896|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp|location=Sequence derived from alignment at scaffold_5:774533..776677- (Nannochloropsis oceanica)
TCTCCTCCTTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAA
CACGAAGACAAAGCAACTGGATTAACAATGAGCGAGAGCAACGCCGCGCC
GGCCTCTGAACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGG
TTATTCGGTTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAG
GTATGCAGGAGAAGAATTTCTGGAGTTGAAAGAATGGTGGTCGTATGCAG
GAGAAGAGAGTCTGGAGTAAAAAGAGCGGTGGTCGGCGTGGAGAGGGGCG
AGAAGTGGATGGTCAGGCACCTCGTGTAGCGGCAGAGAGGGCGGAGGCTG
GTAGTAAGCCATGACGAAGGAACAAGCTGGGTCTCGGGAGTCTTAGCAAG
CCGCACGAATCATGAATATTAACTTTCCATTCTTATCCGCACAGACATTG
GTGGCGGGTGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCA
AGACTTGAGCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTC
GCGTGGTGAGTGAGGCGGAAGGGGTAAAGGGATGAAAAGATGATAAAAGT
GATGAGTGGAATAAAGGGGAAAGAAGCGCGTTCGCCATGGACGGCTTTGT
TGGGCTGCGTGATAGATAATGTTTTGTCGAAGGAGATGGAGACTGCGGCC
AAGACTCCGTGGGTTAGGTAAGCATAATGAGCAGTTCTTCCCTCCCCCCC
TCCGTCCTTCCCCGTCCCACATACTGATGTGTCATTTCTTTTTAATTTAC
CCAGTTTCATAAACTGAAAACACACGTGAACATACTCCGGCTAGTTAGCT
TCCCATGCCCCCACCCTCGCAAGGGTGGGCTGAGATGAGTGCGGGCGAAG
TTGTTTACTCCGGAGGAGAACAAGATGCGTCTTCCCCCTCTTTTCTTCTT
CGAAGGAAGAAAGGGAGGCACGACTCGGTCGAACTCGCATAAGCACCCTG
GGATTAATTTCCTCATTCCAGGGCCGCTTGTTTAGTTGGAGCACATAGGT
TTCTTTTTATGGAGAGTCTTTCCCCTTGAATTTTACTCAACCTTGCCGTC
CTCCCTCCCTTTTTATGCATTCGGATAACCGGTGTATCAACCAGAGCGAT
TTATCAGATTTAGGGCACTATCCTCTACAGCTGCATCATAAACAACAAGA
GCATTCCTTACTCAATTTTTCCCTTCACCCTCCCCCCCTCCCCCCCTCGC
CAGTTGGACAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAG
TCCCTCAACAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTA
TTGTCAAGAAGATGAAGCAAAAGCGAGGGTAAGAGAAAATGATATTGAGC
GCGTGCGTTGCTTTGGGTGAAGAGATGTACCACCTCCCCATCCTTTCCTC
CTTCCCTTCTTTTCTCCCTCCCTTCTCCCTACTTCTGGATCCAGATGTTC
GACAAAAACAATCTGTACCGGGGCGGGCCATGCGAAGGCCCAAAACGATT
TGACGTGACCCACGAAGATGCAAATTCCACCTTCTCTTCCATTCTCAGTC
ACCCCTCTCTCCCTCCCACCCTCCCTCCCTCCCTCCTTATTTTCTTAGCT
ACCCGGACCAATGGCCTTACAAAATCAAAATGTACCGCGACGAATCGGGT
AAAAGCAAAGGCGAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCCCA
TGCTTCGATCTCATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTTGA
AGGTGAGTATGGTGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAGGA
GGGTACTCCGGAGGAGGGGGGGGTTACGGTGGTGGAGGAGGGGGATACGG
AGGAGGGAGGGGCGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGGAG
GAGGTGGCTATGGAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGGGT
GGCGGAGGAGGAAGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGAAG
GTACGATGATAGGGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTATT
AAATACACACAACAGCCTTTTTACGGAAAAAGGTCGAGTAAATGA

Coding sequence (CDS) from alignment at scaffold_5:774533..776677-

>mRNA_2615 ID=mRNA_2615|Name=jgi.p|Nanoce1779_2|661896|organism=Nannochloropsis oceanica|type=CDS|length=3252bp|location=Sequence derived from alignment at scaffold_5:774533..776677- (Nannochloropsis oceanica)
CTACCCGGACCAATGGCCTTACAAAATCAAAATGTACCGCGACGAATCGG
GTAAAAGCAAAGGCGAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCC
CATGCTTCGATCTCATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTT
GAAGGTGAGTATGGTGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAG
GAGGGTACTCCGGAGGAGGGGGGGGTTACGGTGGTGGAGGAGGGGGATAC
GGAGGAGGGAGGGGCGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGG
AGGAGGTGGCTATGGAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGG
GTGGCGGAGGAGGAAGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGA
AGGTACGATGATAGGGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTA
TTAATTGGACAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCA
GTCCCTCAACAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGT
ATTGTCAAGAAGATGAAGCAAAAGCGAGGACATTGGTGGCGGGTGGGGTG
GAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGAGCAAATA
TGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGATGAGCGAGA
GCAACGCCGCGCCGGCCTCTGAACCGTCTGCGCCTGCAGAGCCTGCGGAG
GACCCTAGCGAGGTTATTCGGTTCTTGACACATCTAAGCCCTACATACGC
GGAGCCTGCGAAGCTACCCGGACCAATGGCCTTACAAAATCAAAATGTAC
CGCGACGAATCGGGTAAAAGCAAAGGCGAATGCGTGCTCACGTACGAAGA
GCCTAATTCTGCCCATGCTTCGATCTCATTTTTCCACGGCACGGAACTGG
CTGGGAAGACGTTGAAGGTGAGTATGGTGTCATACGGGGAGGATGAGGAG
GGAGGAAGTGGAGGAGGGTACTCCGGAGGAGGGGGGGGTTACGGTGGTGG
AGGAGGGGGATACGGAGGAGGGAGGGGCGGAGGGGGTGGGTATGGAGGAG
GGCGAGGAGGGGGAGGAGGTGGCTATGGAAGGGACGACCGAGGAGGAGGT
GGAGGATATAGGGGTGGCGGAGGAGGAAGGGGAGGGGGAGGAGGGTACGG
AGGAGGTTACGGAAGGTACGATGATAGGGGCGGACGTAGGGGCGACAGGC
GCGACCGGCCGTATTAATTGGACAAATTGCGTGTTAACGGCACTATCTTT
ATCTCTGGGCTCAGTCCCTCAACAACTGAAGCCGAGATTGCGGAATACTT
CGGCCAGATTGGTATTGTCAAGAAGATGAAGCAAAAGCGAGGACATTGGT
GGCGGGTGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAG
ACTTGAGCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGC
GTGATGAGCGAGAGCAACGCCGCGCCGGCCTCTGAACCGTCTGCGCCTGC
AGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGGTTCTTGACACATCTAA
GCCCTACATACGCGGAGCCTGCGAAGCTACCCGGACCAATGGCCTTACAA
AATCAAAATGTACCGCGACGAATCGGGTAAAAGCAAAGGCGAATGCGTGC
TCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGATCTCATTTTTCCAC
GGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGTATGGTGTCATACGG
GGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTCCGGAGGAGGGGGGG
GTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAGGGGCGGAGGGGGT
GGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCTATGGAAGGGACGA
CCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGAGGAAGGGGAGGGG
GAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGATAGGGGCGGACGT
AGGGGCGACAGGCGCGACCGGCCGTATTAATTGGACAAATTGCGTGTTAA
CGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAACAACTGAAGCCGAGA
TTGCGGAATACTTCGGCCAGATTGGTATTGTCAAGAAGATGAAGCAAAAG
CGAGGACATTGGTGGCGGGTGGGGTGGAGACCGTGGCAGATTTGGCGGGG
CTGGATTATCAAGACTTGAGCAAATATGATATTTCCCGGGAAATTCGGGA
CAAGCTGGGTCGCGTGATGAGCGAGAGCAACGCCGCGCCGGCCTCTGAAC
CGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGGTTC
TTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAGCTACCCGGACC
AATGGCCTTACAAAATCAAAATGTACCGCGACGAATCGGGTAAAAGCAAA
GGCGAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGAT
CTCATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGTA
TGGTGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTCC
GGAGGAGGGGGGGGTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAG
GGGCGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCT
ATGGAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGA
GGAAGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGA
TAGGGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTATTAATTGGACA
AATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAACA
ACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCAAGAA
GATGAAGCAAAAGCGAGGACATTGGTGGCGGGTGGGGTGGAGACCGTGGC
AGATTTGGCGGGGCTGGATTATCAAGACTTGAGCAAATATGATATTTCCC
GGGAAATTCGGGACAAGCTGGGTCGCGTGATGAGCGAGAGCAACGCCGCG
CCGGCCTCTGAACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGA
GGTTATTCGGTTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGA
AG

Synonyms

Publications