jgi.p|Nanoce1779_2|582248, mRNA_3468 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582248
Unique Name	mRNA_3468
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2938
Alignment location	scaffold_6:410737..413674 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582334
Track	FilteredModels2
ProteinId	582248

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:410737..413674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582248	gene_3468	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582248	mRNA_3468-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3468	CDS_3468	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:410737..413674+
coding sequence from alignment at scaffold_6:410737..413674+

mRNA sequence

>mRNA_3468 ID=mRNA_3468|Name=jgi.p|Nanoce1779_2|582248|organism=Nannochloropsis oceanica|type=mRNA|length=2938bp
TCATGTGCCACAGCCACCTCGCCTGCACTTTTTTTCGCCTCTTTCAACTG
TGTCCGCAGTCTCTCAATCTCCTCCTCCTGTCGCCCCTCCAACTCTTCCA
AGCACCGCACCTGCTGTTGCACCTGCCCCAGCGCCACAGCTGCATCACTC
GCATCCTTCCTAGCCTCCTCTACCTGCGCCCGCAGACCCTCCACCTCCTC
CTCCTGCCGACAATTGCCCTCAGTCCACCGCTCTTTCTCCTCTTCCAAAC
ACCGCACCTGCTGTTGCACCTGCTCCAGCGCTATCGTCGCTTCTCTCAAC
TTCTCCTGCCATTCTTCCTCTCTTTTGCTCCCATGTTCATCATGCCCCTC
CTCAGCCTCCTTCAAACCTTCCTCCAGCCGTTTCAGCTCCCCAAGAGCCT
GAGTTGTCCTCACTCCCTCTTTCGTACCGCCATCCACTACCCCTTCAAGT
TCCAGCACCCGAATCTGCAATGCTTCCTTTTCTGCTGCGACTGCTGACTT
GATTGCCTCCTCGCGCTCAGCAGCAGCAGAGGCAGCGGCAGCAAGAGCAG
CCAAGGCCTCCTCTAACTGCTTTTCCACCCCCCCGATCTCCGCTTCCGCA
ATTTCCGCCGTTTCAGCCCCTTCACGCACCATCACCCGATGCTCCTCCTG
CAGCTCCTGAATCAATGCCTGCAATTCCTCCTTTTCCCTCTCTGACTCCT
CCCTTCCTACCACCGCCGCTGCCAGCTCAACTTCCAACCGCTCTACCTTC
TTCTCCGCAATCGCCTTTGCCGCTGCAGCTGTTGCAGCTGATTCAGTCAA
TGTATAAACCCCCTCCGGCGCCAGCACCAGACCATCTAGCTCCTCGAGCC
GCTCTTGCATCTCCTGCGTCTCCTTCTGTATCGCCTCTTTCTCCGTCCTC
ATGGCTGCAAGCTCCTCCTTCAAACTCTTGACCTCCTCCTCTCCCCTTTC
CTTCTTCTCGCTCGCCTCTGCCTCTACTTGACCCAGCAGCACCTCGACTT
CTCGCAATCGGGCTTTCAATAACTCCGTCTCTGAGCGTTCCACTTCCACT
GCACCTTCCGGCAGTTGTTGTCCTCCTCCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCCTTTGCCTTTGCCTCAACCAACTCTCCCTTCA
ACCGTTCATTTTCCGCGACGGCTGCCAGCCGTGCAACCGCTGTCTCCTTC
GCCGCCTGCCTTAACTTCTCCTCGAGTTCTTGTACACGAAAACGCATCAA
GCTCTTCTTATTCTTGCCCTTCCCACATCCCCCTTCCCCCCCGGCAGCAA
CACCAACAGTGGCGGGAACTGTCGCCTCCGCAAGTTCCTTCTCCAAGGTT
ACCACACGCGCATTTTGCTCTTCCATGGCCTCGTTGAACTTATGAGTGGC
CTCGACCAACGTGCGGGCCGCCTCTCCTTCCAAAGAAGTAATGCGTGCTT
CTGCAGCGAGACGCTGATCCTCATGCTGCCGCTGGTGCCTCTCCATCTCC
TCCCTGAGCGAAATTAGCATCCCCTCCTGCTCCACCCACGACGCTGAAGG
TTCTTCGGCATTCTTTTCCACCTCCTTCTCCTGCTGCCGTATCCGGACCA
GCTCCTCCTCCAACCCCTCGGCGTTGGCCTGTGCTACTGCTAAAGCTTGC
TGGTGGCTTTTGACCACTTCCTCTTGTTCCGCCAACAGCAGCTGCATCTC
CTCCTCCATGGTCTGAATCTGTGCCTGCTGTTGTTGCTGCTTCTGGTGGT
GCTCTCCTATCTTCTTCTCCGCCTCCTTCCGTTCAGCCGCGAGAGCTTGA
CGCAACTTATCCCCGTCTTTCTCAAGAGACGCAACTCTCTCCTGTAAGGC
CGTCGTGCCCACAAGCGAGGCTTTCATGTCCTCAGACATTTCTTTTGACA
AAGCCAGCTCCTTCACAGCCATCACCATCTTCTCCTTAGCCTCTCTCACC
TGCACTGTGACCTCTTGTTGCATGCGCTGTTGCTCCTCCCGGGATTTCTC
AAGCGCAAGGGTCAGCTGTTGAACTTCGCCTTTTTCTCCCGCTTCCAATT
GAGCCACCCGAGCCATCCAGTCACTTACTTCATTTCCCTGCATTCGCATG
GCAGTCCCCATGCGCTCTACTTCTGCCTTGAGCGCCGCCATTGCGGTTGC
CCTGCCTGCGGCCTTCCCCTCCGCCTGATCAATCTGCTCTTGCATCTCCT
TCATTCTCTCCTCTGCCTCACGGACCAACGCCCCCAATGCGTTTTTCTCC
GCTTGTTGCACCTCGATTAATTCTTCTAGCTCGGCCAATGCAAGACGCAA
AGTGTCAGCTTCAGCACGGAGTTCGTCGCGCTCCTGTTCCACCTTGCGCT
GGCTGCTGCTGACTTTTCTACCATCTAGACGCGGAATCGCATTGCTTTCA
CAGTGGCCTGCGTCCAAAACCACCGCCTCGTCGTCGTTCTCCTCTTTTTC
ATCATTGCTGGCCATCGAAGCACCCACGGCTACGAGTCCGCCCCCAACTT
TTGCCAGGCTGTTCGCTGCCGAAGAAAATGAGGAGAATGACAGTGGTTTG
TGGGTCTCGAACGACTGCGACGTGGCGCGATAGCCGCTAGCGTCGTTAAT
GGTGCTGCTAGTGCTCCTGTTGTACTCGTAGCTACTGCTGATTTCCTTAT
TGTCAAGGTAATATGAAGATGGACTAACCATGCCATCCTCAAATCCAGAT
GGCACCATGGCTCCAAATTCCCCCTCCTCGTTATCACCTAGGCGGGCGTC
AACCCCGTCTAAGAGCTGTTCAGCCTGCTCCAACGCTGAGCCCATATGCT
GCTTGGCGTGTTGGAGCGTCTCATTCAACGCGCCTTTGAAGAGGTCGAAG
TTCATGGTAAAGTCTGTGGCACGAGGTGGCCTCTTATGGGCCTGGGGTAT
GCAGGCGTTACCTGCTTGCGCTTTGCTTGGCTGCCTGT

protein sequence of jgi.p|Nanoce1779_2|582248

>mRNA_3468-protein ID=mRNA_3468-protein|Name=jgi.p|Nanoce1779_2|582248|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MCHSHLACTFFRLFQLCPQSLNLLLLSPLQLFQAPHLLLHLPQRHSCITR
ILPSLLYLRPQTLHLLLLPTIALSPPLFLLFQTPHLLLHLLQRYRRFSQL
LLPFFLSFAPMFIMPLLSLLQTFLQPFQLPKSLSCPHSLFRTAIHYPFKF
QHPNLQCFLFCCDC*

mRNA from alignment at scaffold_6:410737..413674+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3468 ID=mRNA_3468|Name=jgi.p|Nanoce1779_2|582248|organism=Nannochloropsis oceanica|type=mRNA|length=2938bp|location=Sequence derived from alignment at scaffold_6:410737..413674+ (Nannochloropsis oceanica)
TCATGTGCCACAGCCACCTCGCCTGCACTTTTTTTCGCCTCTTTCAACTG
TGTCCGCAGTCTCTCAATCTCCTCCTCCTGTCGCCCCTCCAACTCTTCCA
AGCACCGCACCTGCTGTTGCACCTGCCCCAGCGCCACAGCTGCATCACTC
GCATCCTTCCTAGCCTCCTCTACCTGCGCCCGCAGACCCTCCACCTCCTC
CTCCTGCCGACAATTGCCCTCAGTCCACCGCTCTTTCTCCTCTTCCAAAC
ACCGCACCTGCTGTTGCACCTGCTCCAGCGCTATCGTCGCTTCTCTCAAC
TTCTCCTGCCATTCTTCCTCTCTTTTGCTCCCATGTTCATCATGCCCCTC
CTCAGCCTCCTTCAAACCTTCCTCCAGCCGTTTCAGCTCCCCAAGAGCCT
GAGTTGTCCTCACTCCCTCTTTCGTACCGCCATCCACTACCCCTTCAAGT
TCCAGCACCCGAATCTGCAATGCTTCCTTTTCTGCTGCGACTGCTGACTT
GATTGCCTCCTCGCGCTCAGCAGCAGCAGAGGCAGCGGCAGCAAGAGCAG
CCAAGGCCTCCTCTAACTGCTTTTCCACCCCCCCGATCTCCGCTTCCGCA
ATTTCCGCCGTTTCAGCCCCTTCACGCACCATCACCCGATGCTCCTCCTG
CAGCTCCTGAATCAATGCCTGCAATTCCTCCTTTTCCCTCTCTGACTCCT
CCCTTCCTACCACCGCCGCTGCCAGCTCAACTTCCAACCGCTCTACCTTC
TTCTCCGCAATCGCCTTTGCCGCTGCAGCTGTTGCAGCTGATTCAGTCAA
TGTATAAACCCCCTCCGGCGCCAGCACCAGACCATCTAGCTCCTCGAGCC
GCTCTTGCATCTCCTGCGTCTCCTTCTGTATCGCCTCTTTCTCCGTCCTC
ATGGCTGCAAGCTCCTCCTTCAAACTCTTGACCTCCTCCTCTCCCCTTTC
CTTCTTCTCGCTCGCCTCTGCCTCTACTTGACCCAGCAGCACCTCGACTT
CTCGCAATCGGGCTTTCAATAACTCCGTCTCTGAGCGTTCCACTTCCACT
GCACCTTCCGGCAGTTGTTGTCCTCCTCCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCCTTTGCCTTTGCCTCAACCAACTCTCCCTTCA
ACCGTTCATTTTCCGCGACGGCTGCCAGCCGTGCAACCGCTGTCTCCTTC
GCCGCCTGCCTTAACTTCTCCTCGAGTTCTTGTACACGAAAACGCATCAA
GCTCTTCTTATTCTTGCCCTTCCCACATCCCCCTTCCCCCCCGGCAGCAA
CACCAACAGTGGCGGGAACTGTCGCCTCCGCAAGTTCCTTCTCCAAGGTT
ACCACACGCGCATTTTGCTCTTCCATGGCCTCGTTGAACTTATGAGTGGC
CTCGACCAACGTGCGGGCCGCCTCTCCTTCCAAAGAAGTAATGCGTGCTT
CTGCAGCGAGACGCTGATCCTCATGCTGCCGCTGGTGCCTCTCCATCTCC
TCCCTGAGCGAAATTAGCATCCCCTCCTGCTCCACCCACGACGCTGAAGG
TTCTTCGGCATTCTTTTCCACCTCCTTCTCCTGCTGCCGTATCCGGACCA
GCTCCTCCTCCAACCCCTCGGCGTTGGCCTGTGCTACTGCTAAAGCTTGC
TGGTGGCTTTTGACCACTTCCTCTTGTTCCGCCAACAGCAGCTGCATCTC
CTCCTCCATGGTCTGAATCTGTGCCTGCTGTTGTTGCTGCTTCTGGTGGT
GCTCTCCTATCTTCTTCTCCGCCTCCTTCCGTTCAGCCGCGAGAGCTTGA
CGCAACTTATCCCCGTCTTTCTCAAGAGACGCAACTCTCTCCTGTAAGGC
CGTCGTGCCCACAAGCGAGGCTTTCATGTCCTCAGACATTTCTTTTGACA
AAGCCAGCTCCTTCACAGCCATCACCATCTTCTCCTTAGCCTCTCTCACC
TGCACTGTGACCTCTTGTTGCATGCGCTGTTGCTCCTCCCGGGATTTCTC
AAGCGCAAGGGTCAGCTGTTGAACTTCGCCTTTTTCTCCCGCTTCCAATT
GAGCCACCCGAGCCATCCAGTCACTTACTTCATTTCCCTGCATTCGCATG
GCAGTCCCCATGCGCTCTACTTCTGCCTTGAGCGCCGCCATTGCGGTTGC
CCTGCCTGCGGCCTTCCCCTCCGCCTGATCAATCTGCTCTTGCATCTCCT
TCATTCTCTCCTCTGCCTCACGGACCAACGCCCCCAATGCGTTTTTCTCC
GCTTGTTGCACCTCGATTAATTCTTCTAGCTCGGCCAATGCAAGACGCAA
AGTGTCAGCTTCAGCACGGAGTTCGTCGCGCTCCTGTTCCACCTTGCGCT
GGCTGCTGCTGACTTTTCTACCATCTAGACGCGGAATCGCATTGCTTTCA
CAGTGGCCTGCGTCCAAAACCACCGCCTCGTCGTCGTTCTCCTCTTTTTC
ATCATTGCTGGCCATCGAAGCACCCACGGCTACGAGTCCGCCCCCAACTT
TTGCCAGGCTGTTCGCTGCCGAAGAAAATGAGGAGAATGACAGTGGTTTG
TGGGTCTCGAACGACTGCGACGTGGCGCGATAGCCGCTAGCGTCGTTAAT
GGTGCTGCTAGTGCTCCTGTTGTACTCGTAGCTACTGCTGATTTCCTTAT
TGTCAAGGTAATATGAAGATGGACTAACCATGCCATCCTCAAATCCAGAT
GGCACCATGGCTCCAAATTCCCCCTCCTCGTTATCACCTAGGCGGGCGTC
AACCCCGTCTAAGAGCTGTTCAGCCTGCTCCAACGCTGAGCCCATATGCT
GCTTGGCGTGTTGGAGCGTCTCATTCAACGCGCCTTTGAAGAGGTCGAAG
TTCATGGTAAAGTCTGTGGCACGAGGTGGCCTCTTATGGGCCTGGGGTAT
GCAGGCGTTACCTGCTTGCGCTTTGCTTGGCTGCCTGT

Coding sequence (CDS) from alignment at scaffold_6:410737..413674+

>mRNA_3468 ID=mRNA_3468|Name=jgi.p|Nanoce1779_2|582248|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_6:410737..413674+ (Nannochloropsis oceanica)
ATGTGCCACAGCCACCTCGCCTGCACTTTTTTTCGCCTCTTTCAACTGTG
TCCGCAGTCTCTCAATCTCCTCCTCCTGTCGCCCCTCCAACTCTTCCAAG
CACCGCACCTGCTGTTGCACCTGCCCCAGCGCCACAGCTGCATCACTCGC
ATCCTTCCTAGCCTCCTCTACCTGCGCCCGCAGACCCTCCACCTCCTCCT
CCTGCCGACAATTGCCCTCAGTCCACCGCTCTTTCTCCTCTTCCAAACAC
CGCACCTGCTGTTGCACCTGCTCCAGCGCTATCGTCGCTTCTCTCAACTT
CTCCTGCCATTCTTCCTCTCTTTTGCTCCCATGTTCATCATGCCCCTCCT
CAGCCTCCTTCAAACCTTCCTCCAGCCGTTTCAGCTCCCCAAGAGCCTGA
GTTGTCCTCACTCCCTCTTTCGTACCGCCATCCACTACCCCTTCAAGTTC
CAGCACCCGAATCTGCAATGCTTCCTTTTCTGCTGCGACTGCTGA

Synonyms

Publications