jgi.p|Nanoce1779_2|582705, mRNA_3590 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582705
Unique NamemRNA_3590
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1790
Alignment locationscaffold_6:716512..718301 -

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Properties
Property NameValue
TranscriptId582791
TrackFilteredModels2
ProteinId582705
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:716512..718301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582705gene_3590Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582705mRNA_3590-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3590CDS_3590Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3590 ID=mRNA_3590|Name=jgi.p|Nanoce1779_2|582705|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
AACAGGAGCGCAGTTGGGGAGGTTTGTGTGTTCGAAGATGCACAGACTTA
TCCTTCATTCACACGTCCGACAACGCGCGCAGGTACCGGTACCCTTCCAC
CGTGCATTTGTAAGCAGTAATGGTGGAGGCAGCAGTCATGGTTGTAGCGG
CAGTGGCGACCGGGAATTTGCCGCGCAAAAGACAGACCCGGCTACAAACG
CGGCTGAGGAGCAGTACATTAGCGTGGACAAGCGGGGACTGTATCAGGAA
GTAGCGCGGGCCATGGGTGGCAAAGTGGAGAAATCCCCTATGACACCATT
AGGCAAACTCTTGCAGGCCTCGATCAAGCAGGTTGGCCCCATTTCCGTCG
CGGACTTTATGGACGTGTGTTTGTCGCACCCCGAGCACGGCTACTACATG
AATAAGGAGACAGCCAAGATTGGGAAGGCAGGCGATTTTATCACAGCCCC
TGAAATCAGCCAAATGTTTGGGGAGCTGCTGGGTGTATGGGGAGTGGCGA
CATGGGAGAAATTGGGGACACCGCGAGCGTTTCGGTTGACGGAGATTGGG
CCAGGGAGGGGGACACTCATGCAAGACATTCTGCGGGTGGCACGGACCTT
TGCCCCGTTTCACAAGAGCTTGGCAGGCGTGCACATGGTAGAGACCAGTC
GGGCGCTGAGAAAGGTGCAAGCTGAAGCTTTGGGTGCTGTTCAAGACAAG
GATCATGAGAAGGAGCTGAAGGAGGGAGAACAAAGTGATCACATTGCAAC
GCAAAAAAGTGACGGGGGGAAGGATGTGGAATGGGAACGTGGTGGCAGAC
AACTTGCACGCAAGCCCCGTTGGCGCCTACCGTGCGAGCAAGGGATTGAT
TGGCACGAGGATGTAAGGCAGGTACCGGTTGGAAGTCCCCTGATTATCTT
TGCGCAAGAACTGCTGGACGCCTTACCGGTACACCAATTCGAGTACACAG
CCGAGGGCTGGAGGGAGCGCCTGGTGGACGTGCAGGAGGACCCACTGGCA
CCTCATCACTTCAAATTTACTCTAGCGAAGGACCCGACCCCACCGGTGAT
CCATTTGGAAAACCTAATGCCCGGTAAATTGCAGGCCTTGCTCGATGCAG
CGGCGGCTGCGGCCCCGGCACCTGCACGAGGGGGCGTGGATGAGGATGAG
GGCGAGAAGAAGAAAGAGGGGGAAACAGAGGAGGTAGACGATGACCCTGA
ACTACGCAAGCTCGGTACGAGTTTGGAAGTGTGTCCGTTGGCACTGCAGA
TCGTGCAGCAGGTGGCGGAGCGGGTGGCGAGGACTGGAGGGGCAGCTTTG
TTTGTTGATTATGGGGAGGATCACGCGCAGGGAGATTCGTTGAGGGGCCT
TAAGAGACATGCCTTGGTGCACGCATTAGCGGAGCCGGGGGAGATCGACT
TGAGCACTGATGTGGATTTTGCGGCAGTTAAGGAGGCGGTGGCAGGGGTG
GACGGGGTGAGGACCTTCGGTCCTATGCCGCAAGGGGAGTTTCTGTCGGC
CATGGGGATTGAGACCAGGCTGCAGGCGCTGTTGGATGGGAAGGAGGGCG
GAGGGCTGACAGATAAGCAGGCATTGTTGCTCTATGATTCATATAGGCGG
TTGGTGGACCCAGAGCAGATGGGGAGGAAGTATAAGGTGTTGGCGTTGGT
GAGCTCGAAACATCAGGGACCGGCGATTGCGTTTCCGTCGACGAGCATGG
CGAAGGAGGACAAGGAGGAGAGTGAAAATTAAAGAAATCCGAAAATTAGT
AATAGGCATGTAACTTTTAGATGGGGCATTTTCGCGTGCT
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protein sequence of jgi.p|Nanoce1779_2|582705

>mRNA_3590-protein ID=mRNA_3590-protein|Name=jgi.p|Nanoce1779_2|582705|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MHRLILHSHVRQRAQVPVPFHRAFVSSNGGGSSHGCSGSGDREFAAQKTD
PATNAAEEQYISVDKRGLYQEVARAMGGKVEKSPMTPLGKLLQASIKQVG
PISVADFMDVCLSHPEHGYYMNKETAKIGKAGDFITAPEISQMFGELLGV
WGVATWEKLGTPRAFRLTEIGPGRGTLMQDILRVARTFAPFHKSLAGVHM
VETSRALRKVQAEALGAVQDKDHEKELKEGEQSDHIATQKSDGGKDVEWE
RGGRQLARKPRWRLPCEQGIDWHEDVRQVPVGSPLIIFAQELLDALPVHQ
FEYTAEGWRERLVDVQEDPLAPHHFKFTLAKDPTPPVIHLENLMPGKLQA
LLDAAAAAAPAPARGGVDEDEGEKKKEGETEEVDDDPELRKLGTSLEVCP
LALQIVQQVAERVARTGGAALFVDYGEDHAQGDSLRGLKRHALVHALAEP
GEIDLSTDVDFAAVKEAVAGVDGVRTFGPMPQGEFLSAMGIETRLQALLD
GKEGGGLTDKQALLLYDSYRRLVDPEQMGRKYKVLALVSSKHQGPAIAFP
STSMAKEDKEESEN*
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mRNA from alignment at scaffold_6:716512..718301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3590 ID=mRNA_3590|Name=jgi.p|Nanoce1779_2|582705|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at scaffold_6:716512..718301- (Nannochloropsis oceanica)
AACAGGAGCGCAGTTGGGGAGGTTTGTGTGTTCGAAGATGCACAGACTTA
TCCTTCATTCACACGTCCGACAACGCGCGCAGGTACCGGTACCCTTCCAC
CGTGCATTTGTAAGCAGTAATGGTGGAGGCAGCAGTCATGGTTGTAGCGG
CAGTGGCGACCGGGAATTTGCCGCGCAAAAGACAGACCCGGCTACAAACG
CGGCTGAGGAGCAGTACATTAGCGTGGACAAGCGGGGACTGTATCAGGAA
GTAGCGCGGGCCATGGGTGGCAAAGTGGAGAAATCCCCTATGACACCATT
AGGCAAACTCTTGCAGGCCTCGATCAAGCAGGTTGGCCCCATTTCCGTCG
CGGACTTTATGGACGTGTGTTTGTCGCACCCCGAGCACGGCTACTACATG
AATAAGGAGACAGCCAAGATTGGGAAGGCAGGCGATTTTATCACAGCCCC
TGAAATCAGCCAAATGTTTGGGGAGCTGCTGGGTGTATGGGGAGTGGCGA
CATGGGAGAAATTGGGGACACCGCGAGCGTTTCGGTTGACGGAGATTGGG
CCAGGGAGGGGGACACTCATGCAAGACATTCTGCGGGTGGCACGGACCTT
TGCCCCGTTTCACAAGAGCTTGGCAGGCGTGCACATGGTAGAGACCAGTC
GGGCGCTGAGAAAGGTGCAAGCTGAAGCTTTGGGTGCTGTTCAAGACAAG
GATCATGAGAAGGAGCTGAAGGAGGGAGAACAAAGTGATCACATTGCAAC
GCAAAAAAGTGACGGGGGGAAGGATGTGGAATGGGAACGTGGTGGCAGAC
AACTTGCACGCAAGCCCCGTTGGCGCCTACCGTGCGAGCAAGGGATTGAT
TGGCACGAGGATGTAAGGCAGGTACCGGTTGGAAGTCCCCTGATTATCTT
TGCGCAAGAACTGCTGGACGCCTTACCGGTACACCAATTCGAGTACACAG
CCGAGGGCTGGAGGGAGCGCCTGGTGGACGTGCAGGAGGACCCACTGGCA
CCTCATCACTTCAAATTTACTCTAGCGAAGGACCCGACCCCACCGGTGAT
CCATTTGGAAAACCTAATGCCCGGTAAATTGCAGGCCTTGCTCGATGCAG
CGGCGGCTGCGGCCCCGGCACCTGCACGAGGGGGCGTGGATGAGGATGAG
GGCGAGAAGAAGAAAGAGGGGGAAACAGAGGAGGTAGACGATGACCCTGA
ACTACGCAAGCTCGGTACGAGTTTGGAAGTGTGTCCGTTGGCACTGCAGA
TCGTGCAGCAGGTGGCGGAGCGGGTGGCGAGGACTGGAGGGGCAGCTTTG
TTTGTTGATTATGGGGAGGATCACGCGCAGGGAGATTCGTTGAGGGGCCT
TAAGAGACATGCCTTGGTGCACGCATTAGCGGAGCCGGGGGAGATCGACT
TGAGCACTGATGTGGATTTTGCGGCAGTTAAGGAGGCGGTGGCAGGGGTG
GACGGGGTGAGGACCTTCGGTCCTATGCCGCAAGGGGAGTTTCTGTCGGC
CATGGGGATTGAGACCAGGCTGCAGGCGCTGTTGGATGGGAAGGAGGGCG
GAGGGCTGACAGATAAGCAGGCATTGTTGCTCTATGATTCATATAGGCGG
TTGGTGGACCCAGAGCAGATGGGGAGGAAGTATAAGGTGTTGGCGTTGGT
GAGCTCGAAACATCAGGGACCGGCGATTGCGTTTCCGTCGACGAGCATGG
CGAAGGAGGACAAGGAGGAGAGTGAAAATTAAAGAAATCCGAAAATTAGT
AATAGGCATGTAACTTTTAGATGGGGCATTTTCGCGTGCT
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Coding sequence (CDS) from alignment at scaffold_6:716512..718301-

>mRNA_3590 ID=mRNA_3590|Name=jgi.p|Nanoce1779_2|582705|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at scaffold_6:716512..718301- (Nannochloropsis oceanica)
ATGCACAGACTTATCCTTCATTCACACGTCCGACAACGCGCGCAGGTACC
GGTACCCTTCCACCGTGCATTTGTAAGCAGTAATGGTGGAGGCAGCAGTC
ATGGTTGTAGCGGCAGTGGCGACCGGGAATTTGCCGCGCAAAAGACAGAC
CCGGCTACAAACGCGGCTGAGGAGCAGTACATTAGCGTGGACAAGCGGGG
ACTGTATCAGGAAGTAGCGCGGGCCATGGGTGGCAAAGTGGAGAAATCCC
CTATGACACCATTAGGCAAACTCTTGCAGGCCTCGATCAAGCAGGTTGGC
CCCATTTCCGTCGCGGACTTTATGGACGTGTGTTTGTCGCACCCCGAGCA
CGGCTACTACATGAATAAGGAGACAGCCAAGATTGGGAAGGCAGGCGATT
TTATCACAGCCCCTGAAATCAGCCAAATGTTTGGGGAGCTGCTGGGTGTA
TGGGGAGTGGCGACATGGGAGAAATTGGGGACACCGCGAGCGTTTCGGTT
GACGGAGATTGGGCCAGGGAGGGGGACACTCATGCAAGACATTCTGCGGG
TGGCACGGACCTTTGCCCCGTTTCACAAGAGCTTGGCAGGCGTGCACATG
GTAGAGACCAGTCGGGCGCTGAGAAAGGTGCAAGCTGAAGCTTTGGGTGC
TGTTCAAGACAAGGATCATGAGAAGGAGCTGAAGGAGGGAGAACAAAGTG
ATCACATTGCAACGCAAAAAAGTGACGGGGGGAAGGATGTGGAATGGGAA
CGTGGTGGCAGACAACTTGCACGCAAGCCCCGTTGGCGCCTACCGTGCGA
GCAAGGGATTGATTGGCACGAGGATGTAAGGCAGGTACCGGTTGGAAGTC
CCCTGATTATCTTTGCGCAAGAACTGCTGGACGCCTTACCGGTACACCAA
TTCGAGTACACAGCCGAGGGCTGGAGGGAGCGCCTGGTGGACGTGCAGGA
GGACCCACTGGCACCTCATCACTTCAAATTTACTCTAGCGAAGGACCCGA
CCCCACCGGTGATCCATTTGGAAAACCTAATGCCCGGTAAATTGCAGGCC
TTGCTCGATGCAGCGGCGGCTGCGGCCCCGGCACCTGCACGAGGGGGCGT
GGATGAGGATGAGGGCGAGAAGAAGAAAGAGGGGGAAACAGAGGAGGTAG
ACGATGACCCTGAACTACGCAAGCTCGGTACGAGTTTGGAAGTGTGTCCG
TTGGCACTGCAGATCGTGCAGCAGGTGGCGGAGCGGGTGGCGAGGACTGG
AGGGGCAGCTTTGTTTGTTGATTATGGGGAGGATCACGCGCAGGGAGATT
CGTTGAGGGGCCTTAAGAGACATGCCTTGGTGCACGCATTAGCGGAGCCG
GGGGAGATCGACTTGAGCACTGATGTGGATTTTGCGGCAGTTAAGGAGGC
GGTGGCAGGGGTGGACGGGGTGAGGACCTTCGGTCCTATGCCGCAAGGGG
AGTTTCTGTCGGCCATGGGGATTGAGACCAGGCTGCAGGCGCTGTTGGAT
GGGAAGGAGGGCGGAGGGCTGACAGATAAGCAGGCATTGTTGCTCTATGA
TTCATATAGGCGGTTGGTGGACCCAGAGCAGATGGGGAGGAAGTATAAGG
TGTTGGCGTTGGTGAGCTCGAAACATCAGGGACCGGCGATTGCGTTTCCG
TCGACGAGCATGGCGAAGGAGGACAAGGAGGAGAGTGAAAATTAA
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Synonyms
Publications