jgi.p|Nanoce1779_2|583252, mRNA_3742 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583252
Unique NamemRNA_3742
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length815
Alignment locationscaffold_6:1111001..1111815 -

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Properties
Property NameValue
TranscriptId583338
TrackFilteredModels2
ProteinId583252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1111001..1111815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583252gene_3742Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583252mRNA_3742-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3742CDS_3742Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3742 ID=mRNA_3742|Name=jgi.p|Nanoce1779_2|583252|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
ATCGCAAGCCCTTTCCAAAGGCCTCTGCTACATCCAACGCACTGCCCGCG
AGACCTCCCTCTCTTCCTCCTCTTCCTCCTCCTCTTCCCCTCTTGCTGCG
CGCATGCTGGTCTTGCAAGCCTCGCCTGACGTCCACGGAGACTACAATGC
CTTTATGAACTGCATCTTCTCCTCACACCGTTCCTCCGTTCCCATTGATG
CAGCCGTCCTTTCCCTCCCTTCTTCCCTCCATCCCTCCTCCGCCTCCTCC
TCGCAACACAGGAAAGACTCCTCTTTCCTGCAGCAAGCCTCCTACATTAC
CGGGGGCATATATATACGCCCTGAGCGGCCTTCTGCCCTTCTTCAGTACT
TCCTTCACCTCTTCCTCCCTTCCCATCGCCTCAGACAAGTCTTGAGGTTA
CCCAAGCAAGAGTCAGTTGATTTTCGCGCGGCGTGTTTTTGCCATCGACG
GGCAGTGGAGCAGGCCTATGTCTGCTCGGTGTGCCTGAGTATTTTTTGTG
CCTTTACCAAAGAATGTCCCACGTGTGGGACACCGGCTAGACCGCCAAAA
GGGGGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGAAGATGGGTAGGGAGTAGAGAAGCGGAAATAGGCAGGTGG
GAATGGAGGGGTGTGCGAGGAAGGTCAGTGTAATACCATGTAAAGGATTC
AAGTATAGAAGAAGAAGGGCGTAGCATAGAAGAAGAAGGAAAAAGATGCT
GAAAATTAAGTTAAAAATAGTTGACACGTTGAGGGTATCCAACCAGTGGA
AATCAACAATGCGAT
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protein sequence of jgi.p|Nanoce1779_2|583252

>mRNA_3742-protein ID=mRNA_3742-protein|Name=jgi.p|Nanoce1779_2|583252|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MLVLQASPDVHGDYNAFMNCIFSSHRSSVPIDAAVLSLPSSLHPSSASSS
QHRKDSSFLQQASYITGGIYIRPERPSALLQYFLHLFLPSHRLRQVLRLP
KQESVDFRAACFCHRRAVEQAYVCSVCLSIFCAFTKECPTCGTPARPPKG
GGGGGGGRGGGGGGGGGGGKMGRE*
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mRNA from alignment at scaffold_6:1111001..1111815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3742 ID=mRNA_3742|Name=jgi.p|Nanoce1779_2|583252|organism=Nannochloropsis oceanica|type=mRNA|length=815bp|location=Sequence derived from alignment at scaffold_6:1111001..1111815- (Nannochloropsis oceanica)
ATCGCAAGCCCTTTCCAAAGGCCTCTGCTACATCCAACGCACTGCCCGCG
AGACCTCCCTCTCTTCCTCCTCTTCCTCCTCCTCTTCCCCTCTTGCTGCG
CGCATGCTGGTCTTGCAAGCCTCGCCTGACGTCCACGGAGACTACAATGC
CTTTATGAACTGCATCTTCTCCTCACACCGTTCCTCCGTTCCCATTGATG
CAGCCGTCCTTTCCCTCCCTTCTTCCCTCCATCCCTCCTCCGCCTCCTCC
TCGCAACACAGGAAAGACTCCTCTTTCCTGCAGCAAGCCTCCTACATTAC
CGGGGGCATATATATACGCCCTGAGCGGCCTTCTGCCCTTCTTCAGTACT
TCCTTCACCTCTTCCTCCCTTCCCATCGCCTCAGACAAGTCTTGAGGTTA
CCCAAGCAAGAGTCAGTTGATTTTCGCGCGGCGTGTTTTTGCCATCGACG
GGCAGTGGAGCAGGCCTATGTCTGCTCGGTGTGCCTGAGTATTTTTTGTG
CCTTTACCAAAGAATGTCCCACGTGTGGGACACCGGCTAGACCGCCAAAA
GGGGGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGAAGATGGGTAGGGAGTAGAGAAGCGGAAATAGGCAGGTGG
GAATGGAGGGGTGTGCGAGGAAGGTCAGTGTAATACCATGTAAAGGATTC
AAGTATAGAAGAAGAAGGGCGTAGCATAGAAGAAGAAGGAAAAAGATGCT
GAAAATTAAGTTAAAAATAGTTGACACGTTGAGGGTATCCAACCAGTGGA
AATCAACAATGCGAT
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Coding sequence (CDS) from alignment at scaffold_6:1111001..1111815-

>mRNA_3742 ID=mRNA_3742|Name=jgi.p|Nanoce1779_2|583252|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_6:1111001..1111815- (Nannochloropsis oceanica)
ATGCTGGTCTTGCAAGCCTCGCCTGACGTCCACGGAGACTACAATGCCTT
TATGAACTGCATCTTCTCCTCACACCGTTCCTCCGTTCCCATTGATGCAG
CCGTCCTTTCCCTCCCTTCTTCCCTCCATCCCTCCTCCGCCTCCTCCTCG
CAACACAGGAAAGACTCCTCTTTCCTGCAGCAAGCCTCCTACATTACCGG
GGGCATATATATACGCCCTGAGCGGCCTTCTGCCCTTCTTCAGTACTTCC
TTCACCTCTTCCTCCCTTCCCATCGCCTCAGACAAGTCTTGAGGTTACCC
AAGCAAGAGTCAGTTGATTTTCGCGCGGCGTGTTTTTGCCATCGACGGGC
AGTGGAGCAGGCCTATGTCTGCTCGGTGTGCCTGAGTATTTTTTGTGCCT
TTACCAAAGAATGTCCCACGTGTGGGACACCGGCTAGACCGCCAAAAGGG
GGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAAGATGGGTAGGGAGTAG
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Synonyms
Publications