jgi.p|Nanoce1779_2|611957, mRNA_10322 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611957
Unique Name	mRNA_10322
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1029
Alignment location	scaffold_60:71192..72220 +

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Properties


Property Name	Value
TranscriptId	612043
Track	FilteredModels2
ProteinId	611957

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:71192..72220 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611957	gene_10322	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611957	mRNA_10322-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10322	CDS_10322	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:71192..72220+
coding sequence from alignment at scaffold_60:71192..72220+

mRNA sequence

>mRNA_10322 ID=mRNA_10322|Name=jgi.p|Nanoce1779_2|611957|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
AGGGAGGGAGGTGGGGAGGGAGGAGGGAAGGAGGGAGGGAAGGAGGGAGG
GAAGGCAGGAACCCGAAGCTGGCATTTGCTTGTCTAGCCGCGCATTGCGT
AGGGCAGAGCACAGGTAGAAGGAGGGTGGAAAGGAAGGAGGTCAAGACGG
AGGGGATGGTCGATGTAGACATCCTGCCTGCGAAAGAAACAACGATTATT
ATCCAGAGCAACCGGTGATGGGAGGTGGAATAAGGAGAAAACGGGAGGAG
CAGACCACTGGCACTGCTAAGAGGAGGAGGCTTTGGATGATTTCTCCCCT
TGACCCTCTTCTTCTTTCCTTCTTCTTTCTCCCGTCTCATTCTTTCTACT
CAGCCTTCGTTCTCTTCATTTTTGCCTCGTTTCTTGTTCTTTCCAACAAC
GTCTCTTTGAATCATATGGGTTCCGATTTCAATTATTGTCACTCGTTCGC
TTTACTTTTTTCCTCGTCGTCCCTCTTCTGTCTCTCTGTCTCTCCCGCAC
ACTCGGTGTCTTGTCACTCTCCCTTCTTCTATCCGTCCTTTGCGTCCTCG
TGCCTGCCACACGTCGTTTCGTCTCTCCTTGTAGTTTGTAGATGAATGTA
CTTTCTTCCATAACTTCACGAGCCCGGGTGACTCGCGCCTTCGCTTGCCC
TTTTATCATCCTTATTTTCTCGCTCATAAATATCTATCGTCAACCGTCGT
ACTCGTACTCGTCGTACCCGTGAGGTGATGGGTGGGTGAGGGTGCCTCAA
TATGTAACAAACAATTTAAACAAACCGATACGTTTCTCGCAACCTCCTGC
CCTTCCTCTCCCTTCCTCCCTCCCAACTGGCTTTTTCCTCTTTATAGTCC
AAAGGCCCCTCCATCGACAATCCCCTCCCGTCTGACTCCGATTTGATTTC
CCTGTCATTTGAGCCACACCTAGAGTCCCCTCTTCCTTTCCCTCCCTCCC
TCCCTCCCTCACGACAAGGACGAGAAGGAGGACGACACGGAAGATGCCTC
TGACCTCGGCCCACTGCATGTGCTAGCCG

protein sequence of jgi.p|Nanoce1779_2|611957

>mRNA_10322-protein ID=mRNA_10322-protein|Name=jgi.p|Nanoce1779_2|611957|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MGGGIRRKREEQTTGTAKRRRLWMISPLDPLLLSFFFLPSHSFYSAFVLF
IFASFLVLSNNVSLNHMGSDFNYCHSFALLFSSSSLFCLSVSPAHSVSCH
SPFFYPSFASSCLPHVVSSLLVVCR*

mRNA from alignment at scaffold_60:71192..72220+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10322 ID=mRNA_10322|Name=jgi.p|Nanoce1779_2|611957|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at scaffold_60:71192..72220+ (Nannochloropsis oceanica)
AGGGAGGGAGGTGGGGAGGGAGGAGGGAAGGAGGGAGGGAAGGAGGGAGG
GAAGGCAGGAACCCGAAGCTGGCATTTGCTTGTCTAGCCGCGCATTGCGT
AGGGCAGAGCACAGGTAGAAGGAGGGTGGAAAGGAAGGAGGTCAAGACGG
AGGGGATGGTCGATGTAGACATCCTGCCTGCGAAAGAAACAACGATTATT
ATCCAGAGCAACCGGTGATGGGAGGTGGAATAAGGAGAAAACGGGAGGAG
CAGACCACTGGCACTGCTAAGAGGAGGAGGCTTTGGATGATTTCTCCCCT
TGACCCTCTTCTTCTTTCCTTCTTCTTTCTCCCGTCTCATTCTTTCTACT
CAGCCTTCGTTCTCTTCATTTTTGCCTCGTTTCTTGTTCTTTCCAACAAC
GTCTCTTTGAATCATATGGGTTCCGATTTCAATTATTGTCACTCGTTCGC
TTTACTTTTTTCCTCGTCGTCCCTCTTCTGTCTCTCTGTCTCTCCCGCAC
ACTCGGTGTCTTGTCACTCTCCCTTCTTCTATCCGTCCTTTGCGTCCTCG
TGCCTGCCACACGTCGTTTCGTCTCTCCTTGTAGTTTGTAGATGAATGTA
CTTTCTTCCATAACTTCACGAGCCCGGGTGACTCGCGCCTTCGCTTGCCC
TTTTATCATCCTTATTTTCTCGCTCATAAATATCTATCGTCAACCGTCGT
ACTCGTACTCGTCGTACCCGTGAGGTGATGGGTGGGTGAGGGTGCCTCAA
TATGTAACAAACAATTTAAACAAACCGATACGTTTCTCGCAACCTCCTGC
CCTTCCTCTCCCTTCCTCCCTCCCAACTGGCTTTTTCCTCTTTATAGTCC
AAAGGCCCCTCCATCGACAATCCCCTCCCGTCTGACTCCGATTTGATTTC
CCTGTCATTTGAGCCACACCTAGAGTCCCCTCTTCCTTTCCCTCCCTCCC
TCCCTCCCTCACGACAAGGACGAGAAGGAGGACGACACGGAAGATGCCTC
TGACCTCGGCCCACTGCATGTGCTAGCCG

Coding sequence (CDS) from alignment at scaffold_60:71192..72220+

>mRNA_10322 ID=mRNA_10322|Name=jgi.p|Nanoce1779_2|611957|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_60:71192..72220+ (Nannochloropsis oceanica)
ATGGGAGGTGGAATAAGGAGAAAACGGGAGGAGCAGACCACTGGCACTGC
TAAGAGGAGGAGGCTTTGGATGATTTCTCCCCTTGACCCTCTTCTTCTTT
CCTTCTTCTTTCTCCCGTCTCATTCTTTCTACTCAGCCTTCGTTCTCTTC
ATTTTTGCCTCGTTTCTTGTTCTTTCCAACAACGTCTCTTTGAATCATAT
GGGTTCCGATTTCAATTATTGTCACTCGTTCGCTTTACTTTTTTCCTCGT
CGTCCCTCTTCTGTCTCTCTGTCTCTCCCGCACACTCGGTGTCTTGTCAC
TCTCCCTTCTTCTATCCGTCCTTTGCGTCCTCGTGCCTGCCACACGTCGT
TTCGTCTCTCCTTGTAGTTTGTAGATGA

Synonyms

Publications