jgi.p|Nanoce1779_2|561119, mRNA_10935 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|561119
Unique NamemRNA_10935
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length335
Alignment locationscaffold_68:56069..56911 -

Link to JBrowse

Properties
Property NameValue
TranscriptId561205
TrackFilteredModels2
ProteinId561119
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:56069..56911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|561119gene_10935Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|561119mRNA_10935-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10935CDS_10935Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10935 ID=mRNA_10935|Name=jgi.p|Nanoce1779_2|561119|organism=Nannochloropsis oceanica|type=mRNA|length=335bp
GGCCCCGCTGGGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGC
AGTGGCATCCACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGT
TAACCTGGATGAATGGAAGACGGAGCACGTCGAGCAAATGGAACGCTGGG
GTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCTAT
GCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGACCAAGTGGATACG
GGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACGGCTCGGTGCCAG
CGCGTCAGTTGGTGGCGTCGTCACGCAATCACGAG
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protein sequence of jgi.p|Nanoce1779_2|561119

>mRNA_10935-protein ID=mRNA_10935-protein|Name=jgi.p|Nanoce1779_2|561119|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MGTFICIKCSGIHRNLGVHISFVRSVNLDEWKTEHVEQMERWGNGRARAY
FEAEVPSSYARPSDWSNVQQMTKWIRDKYEYKRFLPRDGSVPARQLVASS
RNHE
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mRNA from alignment at scaffold_68:56069..56911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10935 ID=mRNA_10935|Name=jgi.p|Nanoce1779_2|561119|organism=Nannochloropsis oceanica|type=mRNA|length=843bp|location=Sequence derived from alignment at scaffold_68:56069..56911- (Nannochloropsis oceanica)
GGCCCCGCTGGGCCTCGGCCACGATGGGCACCTTTATCTGCATTAAGTGC
AGTGGCATCCACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGT
TAACCTGGATGAATGGAAGACGGAGCACGTCGAGGTGAGGGAGGGAGGGA
GGGAGAGAGGAGGAGGGCTGTAGTTGGACTGGCACCTGTGTCATTCAGCA
GCCTGGGAAAGTACGTGCTCTGTCTCTTCCACCCTACTCACCGCTCTTCG
AAAACAATTAAAACCAACAGCAAATGGAACGCTGGGGTAACGGTCGCGCG
CGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGA
CTGGTCTAATGTGCAGCAGATGACCAAGTGGATACGGGTGAGCACAGGGA
TAGAAGGAGGGGGGGGGGGGGGGAAGGGGGGCAGAGAGTGAAAGACCAGC
CAATTTGTCTGGTGTACTATCATAGATGTGTGTACTCTCTCGTGGTCTCA
CATCCCTCCCCTCCCTCCCTTCCTTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTCCCACAGGACAAGTACGAATACAAACGTTTCCT
GCCCCGCGACGGCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGGT
ACGTCTCGGGGAGGAATGAGGGAAGGAGGAAGGGAAGGAGGGAGGGAGGG
AGGGACAGCCACAGCTGAACCTAGTTATGCCACCCCACGTCCCCTCCGCG
TCTCACGTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTTTC
CTGTCTTTACCCTTCGCAATATGCACCTGGCAGCAATCACGAG
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Coding sequence (CDS) from alignment at scaffold_68:56069..56911-

>mRNA_10935 ID=mRNA_10935|Name=jgi.p|Nanoce1779_2|561119|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_68:56069..56911- (Nannochloropsis oceanica)
CAATCACGAGGACAAGTACGAATACAAACGTTTCCTGCCCCGCGACGGCT
CGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGCAAATGGAACGCTGGG
GTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCTAT
GCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGACCAAGTGGATACG
GATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCCACCGCAACCTGG
GCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGATGAATGGAAGACG
GAGCACGTCGAGCAATCACGAGGACAAGTACGAATACAAACGTTTCCTGC
CCCGCGACGGCTCGGTGCCAGCGCGTCAGTTGGTGGCGTCGTCACGCAAA
TGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATTTCGAGGCGGAGGTA
CCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAATGTGCAGCAGATGAC
CAAGTGGATACGGATGGGCACCTTTATCTGCATTAAGTGCAGTGGCATCC
ACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCTGTTAACCTGGAT
GAATGGAAGACGGAGCACGTCGAGCAATCACGAGGACAAGTACGAATACA
AACGTTTCCTGCCCCGCGACGGCTCGGTGCCAGCGCGTCAGTTGGTGGCG
TCGTCACGCAAATGGAACGCTGGGGTAACGGTCGCGCGCGAGCCTATTTC
GAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGACTGGTCTAATGT
GCAGCAGATGACCAAGTGGATACGGATGGGCACCTTTATCTGCATTAAGT
GCAGTGGCATCCACCGCAACCTGGGCGTGCACATCTCCTTCGTCCGCTCT
GTTAACCTGGATGAATGGAAGACGGAGCACGTCGAGCAATCACGAGGACA
AGTACGAATACAAACGTTTCCTGCCCCGCGACGGCTCGGTGCCAGCGCGT
CAGTTGGTGGCGTCGTCACGCAAATGGAACGCTGGGGTAACGGTCGCGCG
CGAGCCTATTTCGAGGCGGAGGTACCCTCGTCCTATGCCCGCCCCTCAGA
CTGGTCTAATGTGCAGCAGATGACCAAGTGGATACGGATGGGCACCTTTA
TCTGCATTAAGTGCAGTGGCATCCACCGCAACCTGGGCGTGCACATCTCC
TTCGTCCGCTCTGTTAACCTGGATGAATGGAAGACGGAGCACGTCGAG
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Synonyms
Publications