jgi.p|Nanoce1779_2|629277, mRNA_3003 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629277
Unique NamemRNA_3003
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length666
Alignment locationscaffold_7:440014..440679 -

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Properties
Property NameValue
TranscriptId629363
TrackFilteredModels2
ProteinId629277
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:440014..440679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629277gene_3003Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629277mRNA_3003-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3003CDS_3003Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3003 ID=mRNA_3003|Name=jgi.p|Nanoce1779_2|629277|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ATGATCCTGTCCACGGTGTGTGAGTTGCGTCGAAGCGAGTGGCGATTGCA
TCGTGAATCCCAAAACAAAAGGAGCGTAGAAGTAGCCGGGGGTAGCGAGG
GAGAACAATTGTTTTCTTCAACTTCCGACCAACTGATGAACAAAAACATT
TGGAGCAAGCAGCTGTCGGACCGACGTGGTCAATTCTTATGTCTCGATCT
CTCCGTTCCCGTTTGTTTGCTTGTCAATGGAGACCCAGGGACACGGAGTG
GTAGAGGGGAAGCTACCGTATCTGTGCCTGAACTGATGGGCACGGAGGAG
TACTGCATGGGTCAACCCACTGGAGTGGTTGGATGGGAACATATGACAAG
TCCGGGAGCCCCAGGTCCCGAGACATCGTGTCGCGGCTGACATGTCCAGG
TCTCATTCATGTCCCCTAGCGCATGTGACGAGAGGCGAGTAATCGAGGTG
GAGCAAGGGCCATGCATCGATTGAATTGGAAGGAGGTCACCTTACAGAGC
GAGAAAACAAGTCACTAACCACGTCTCGAAGGAAAAAGGAGGGGGGCGGC
GGGACATGGAGGGGAATCCAACCCCGCTGACCGGCCTGTACAACCCACTT
TGTGGATTCACGCAATGATGCAAAAACAATACACTTTCTCAATTTTAGAG
ATGGTATAAAGTCTCA
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protein sequence of jgi.p|Nanoce1779_2|629277

>mRNA_3003-protein ID=mRNA_3003-protein|Name=jgi.p|Nanoce1779_2|629277|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MILSTVCELRRSEWRLHRESQNKRSVEVAGGSEGEQLFSSTSDQLMNKNI
WSKQLSDRRGQFLCLDLSVPVCLLVNGDPGTRSGRGEATVSVPELMGTEE
YCMGQPTGVVGWEHMTSPGAPGPETSCRG*
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mRNA from alignment at scaffold_7:440014..440679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3003 ID=mRNA_3003|Name=jgi.p|Nanoce1779_2|629277|organism=Nannochloropsis oceanica|type=mRNA|length=666bp|location=Sequence derived from alignment at scaffold_7:440014..440679- (Nannochloropsis oceanica)
ATGATCCTGTCCACGGTGTGTGAGTTGCGTCGAAGCGAGTGGCGATTGCA
TCGTGAATCCCAAAACAAAAGGAGCGTAGAAGTAGCCGGGGGTAGCGAGG
GAGAACAATTGTTTTCTTCAACTTCCGACCAACTGATGAACAAAAACATT
TGGAGCAAGCAGCTGTCGGACCGACGTGGTCAATTCTTATGTCTCGATCT
CTCCGTTCCCGTTTGTTTGCTTGTCAATGGAGACCCAGGGACACGGAGTG
GTAGAGGGGAAGCTACCGTATCTGTGCCTGAACTGATGGGCACGGAGGAG
TACTGCATGGGTCAACCCACTGGAGTGGTTGGATGGGAACATATGACAAG
TCCGGGAGCCCCAGGTCCCGAGACATCGTGTCGCGGCTGACATGTCCAGG
TCTCATTCATGTCCCCTAGCGCATGTGACGAGAGGCGAGTAATCGAGGTG
GAGCAAGGGCCATGCATCGATTGAATTGGAAGGAGGTCACCTTACAGAGC
GAGAAAACAAGTCACTAACCACGTCTCGAAGGAAAAAGGAGGGGGGCGGC
GGGACATGGAGGGGAATCCAACCCCGCTGACCGGCCTGTACAACCCACTT
TGTGGATTCACGCAATGATGCAAAAACAATACACTTTCTCAATTTTAGAG
ATGGTATAAAGTCTCA
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Coding sequence (CDS) from alignment at scaffold_7:440014..440679-

>mRNA_3003 ID=mRNA_3003|Name=jgi.p|Nanoce1779_2|629277|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_7:440014..440679- (Nannochloropsis oceanica)
ATGATCCTGTCCACGGTGTGTGAGTTGCGTCGAAGCGAGTGGCGATTGCA
TCGTGAATCCCAAAACAAAAGGAGCGTAGAAGTAGCCGGGGGTAGCGAGG
GAGAACAATTGTTTTCTTCAACTTCCGACCAACTGATGAACAAAAACATT
TGGAGCAAGCAGCTGTCGGACCGACGTGGTCAATTCTTATGTCTCGATCT
CTCCGTTCCCGTTTGTTTGCTTGTCAATGGAGACCCAGGGACACGGAGTG
GTAGAGGGGAAGCTACCGTATCTGTGCCTGAACTGATGGGCACGGAGGAG
TACTGCATGGGTCAACCCACTGGAGTGGTTGGATGGGAACATATGACAAG
TCCGGGAGCCCCAGGTCCCGAGACATCGTGTCGCGGCTGA
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Synonyms
Publications