Properties
| Property Name | Value |
|---|
| TranscriptId | 670138 |
| Track | FilteredModels2 |
| ProteinId | 670052 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:1151706..1153401 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3304 ID=mRNA_3304|Name=jgi.p|Nanoce1779_2|670052|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp
AGGCGCTGAAGATATAAGCGACGTCTGTGGTGGCGTGGGCATCAGGACAG
CAATGCTTGTTGTCCATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTC
CTTCTGATCACTAATAAATCAATTTATGCCTTTGTCCTTCCTACGTCCCG
CCCTGGCCACCACTGCTTCCCATCCACCACGCTCCTCTGCGCCATCCCCA
TAAGCAAACTTCCTGCAATCGGCCCCTCTTTCTACGACGACGTCCGCAAA
CAAGCCATAGACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAACT
CGAGATCGAATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGTG
AATTCTTGGATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTTC
ACCCCCAAAGGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGGC
GACGCTCGCGAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGGA
TCGAATCCGCCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGGTG
GTCGTCACCCCAGGCTTTAATGTTCAAGAATATATTAATATGGAGAAGAT
TCAACGCCCGGGCGTGCCCATGGTGGTCGTCAATGGCAACCTCGATCGGA
TCCGAGGAGGCTACTACCCTCGACTCTTCTATCCAGGTCTCTACAACGTC
AAGGAGCGAATGCTCAAGTTTTTCGAACCTGTCTTCTACCTCAAGCCAGC
CCAAGGTGGCTTTATCTATAGAAGGTACCCGGAGGAATGGCAGCAGGTGT
TGACGTATTATGATTTCCGGCAGCAGCTGAGGACGGTGAGGAGGGACGGG
CGGACGGAGGAGAAGAAGGAGGTGCTCCGGAAGGTGGTGGAGACAACGAG
GGAGCGGCCGGCCTACAACGATGTGGTGAACGCGCTCAAGAAGGAGAGTG
CCAGAATGGGGAGGGAGGCCCAGGAAGCGCAGGAGGAGGAGGAGAGGGTG
GAGGCGGCGGAGAGGGAGGCGAAGAGACAAAGATTAGGATAGGAGGAAGT
GTGGGGGGTTACAGGTGTCAAGAAGATATTGAATGGCAAACGACGTGGTT
TGGCAGCCCTGTGGGTGTTGCTTTAGCGTGTGATGTTCTTTGTTTCGTCC
CCCCCTTCGTTCCTTCAGC back to topprotein sequence of jgi.p|Nanoce1779_2|670052 >mRNA_3304-protein ID=mRNA_3304-protein|Name=jgi.p|Nanoce1779_2|670052|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MLVVHDHAPYFLLLLLLLITNKSIYAFVLPTSRPGHHCFPSTTLLCAIPI
SKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGE
FLDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRIIGI
ESAMKMPKEEVCELQVVVTPGFNVQEYINMEKIQRPGVPMVVVNGNLDRI
RGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQQVL
TYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALKKESA
RMGREAQEAQEEEERVEAAEREAKRQRLG* back to topmRNA from alignment at scaffold_7:1151706..1153401- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3304 ID=mRNA_3304|Name=jgi.p|Nanoce1779_2|670052|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp|location=Sequence derived from alignment at scaffold_7:1151706..1153401- (Nannochloropsis oceanica)
AGGCGCTGAAGATATAAGCGACGTCTGTGGTGGCGTGGGCATCAGGACAG
CAATGCTTGGTAAGTTCCGGAAAATGTACGAAAAACCTCTTGCGCCTCTT
GCAACAGACCTCCCCATCCTCCCTCCCTTTCCCTGTTCCAATAGTTGTCC
ATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTCCTTCTGATCACTAAT
AAATCAATTTATGCCTTTGTCCTTCCTACGTCCCGCCCTGGCCACCACTG
CTTCCCATCCACCACGCTCCTCTGCGCCATCCCCATAAGCAAACTTCCTG
CAATCGGCCCCTCTTTCTACGACGACGTCCGCAAACAAGGTGATTTCGTC
TTGTTGTCTTTGTCTCCTTCCATTTCGCTTTCTTTCCTAGTTTCCTTTCC
TCCTTACCTACCAGACCCATCACACCCTTCCCTTCACACCAATACCAGCC
ATAGACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAACTCGAGAT
CGAATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGTGAATTCT
TGGATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTTCACCCCC
AAAGGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGGCGACGCT
CGCGAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGGATCGAAT
CCGCCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGGTACGTCAT
AGTGGAGAGTAGGGGGCGGGGGAAAGGCCAATTTTGTGAGTGTATGACAT
ATTTTTGACTGCAATGTGCACTTGTTCCCCCTAAATTCCCTCCCTTTCTC
TCGTCTTCTTTCCGTCCATTTCCACAGGTGGTCGTCACCCCAGGCTTTAA
TGTTCAAGAATATATTAATATGGAGAAGATTCAACGCCCGGGCGTGCCCA
TGGTGGTCGTCAATGGCAACCTCGATCGGATCCGAGGAGGTGAGGAAGGG
AGTGAGGGAGGGAGGGAGGAAAGGAGGACGCAAGCTGAAACCAAAAGCGG
AGGACATGGGTTGAGAAATTGTTATTTACATGCTTAACTTAAAATTCCGC
CACTTGATCCATTGTTAATGTGTAAGAAAGTGCTACGTACCCCTACTCAC
TCTCCCCTCCCTCCCTCCCTCCCTCCTACCCTCAAGGCTACTACCCTCGA
CTCTTCTATCCAGGTCTCTACAACGTCAAGGAGCGAATGCTCAAGTTTTT
CGAACCTGTCTTCTACCTCAAGCCAGCCCAAGGTGGCTTTATCTATAGAA
GGTACCCGGAGGAATGGCAGCAGGTGTTGACGTATTATGATTTCCGGCAG
CAGCTGAGGACGGTGAGGAGGGACGGGCGGACGGAGGAGAAGAAGGAGGT
GCTCCGGAAGGTGGTGGAGACAACGAGGGAGCGGCCGGCCTACAACGATG
TGGTGAACGCGCTCAAGAAGGAGAGTGCCAGAATGGGGAGGGAGGCCCAG
GAAGCGCAGGAGGAGGAGGAGAGGGTGGAGGCGGCGGAGAGGGAGGCGAA
GAGACAAAGATTAGGATAGGAGGAAGTGTGGGGGGTTACAGGTGTCAAGA
AGATATTGAATGGCAAACGACGTGGTTTGGCAGCCCTGTGGGTGTTGCTT
TAGCGTGTGATGTTCTTTGTTTCGTCCCCCCCTTCGTTCCTTCAGC back to topCoding sequence (CDS) from alignment at scaffold_7:1151706..1153401- >mRNA_3304 ID=mRNA_3304|Name=jgi.p|Nanoce1779_2|670052|organism=Nannochloropsis oceanica|type=CDS|length=4950bp|location=Sequence derived from alignment at scaffold_7:1151706..1153401- (Nannochloropsis oceanica)
GCTACTACCCTCGACTCTTCTATCCAGGTCTCTACAACGTCAAGGAGCGA
ATGCTCAAGTTTTTCGAACCTGTCTTCTACCTCAAGCCAGCCCAAGGTGG
CTTTATCTATAGAAGGTACCCGGAGGAATGGCAGCAGGTGTTGACGTATT
ATGATTTCCGGCAGCAGCTGAGGACGGTGAGGAGGGACGGGCGGACGGAG
GAGAAGAAGGAGGTGCTCCGGAAGGTGGTGGAGACAACGAGGGAGCGGCC
GGCCTACAACGATGTGGTGAACGCGCTCAAGAAGGAGAGTGCCAGAATGG
GGAGGGAGGCCCAGGAAGCGCAGGAGGAGGAGGAGAGGGTGGAGGCGGCG
GAGAGGGAGGCGAAGAGACAAAGATTAGGATAGGTGGTCGTCACCCCAGG
CTTTAATGTTCAAGAATATATTAATATGGAGAAGATTCAACGCCCGGGCG
TGCCCATGGTGGTCGTCAATGGCAACCTCGATCGGATCCGAGGAGCCATA
GACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAACTCGAGATCGA
ATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGTGAATTCTTGG
ATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTTCACCCCCAAA
GGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGGCGACGCTCGC
GAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGGATCGAATCCG
CCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGTTGTCCATGACC
ATGCGCCGTATTTCCTGCTCCTGCTCCTCCTTCTGATCACTAATAAATCA
ATTTATGCCTTTGTCCTTCCTACGTCCCGCCCTGGCCACCACTGCTTCCC
ATCCACCACGCTCCTCTGCGCCATCCCCATAAGCAAACTTCCTGCAATCG
GCCCCTCTTTCTACGACGACGTCCGCAAACAAGATGCTTGGCTACTACCC
TCGACTCTTCTATCCAGGTCTCTACAACGTCAAGGAGCGAATGCTCAAGT
TTTTCGAACCTGTCTTCTACCTCAAGCCAGCCCAAGGTGGCTTTATCTAT
AGAAGGTACCCGGAGGAATGGCAGCAGGTGTTGACGTATTATGATTTCCG
GCAGCAGCTGAGGACGGTGAGGAGGGACGGGCGGACGGAGGAGAAGAAGG
AGGTGCTCCGGAAGGTGGTGGAGACAACGAGGGAGCGGCCGGCCTACAAC
GATGTGGTGAACGCGCTCAAGAAGGAGAGTGCCAGAATGGGGAGGGAGGC
CCAGGAAGCGCAGGAGGAGGAGGAGAGGGTGGAGGCGGCGGAGAGGGAGG
CGAAGAGACAAAGATTAGGATAGGTGGTCGTCACCCCAGGCTTTAATGTT
CAAGAATATATTAATATGGAGAAGATTCAACGCCCGGGCGTGCCCATGGT
GGTCGTCAATGGCAACCTCGATCGGATCCGAGGAGCCATAGACGCCGTCC
AAGCAGGCCTTAGAGACGGGCTCGAGCAACTCGAGATCGAATTCCCTATC
AGCCCGGGCAGAATCGATGTATCGTTGGGTGAATTCTTGGATGACTCCCG
GGAATGGACGAGAGAATTCGTGCGACCTTTCACCCCCAAAGGATCAAAGC
TGTGGGTAATTTTCCCTGATGGCAAGGAGGCGACGCTCGCGAATGAGCGT
TGGGGAGGCGTGAATTTTCGGATAATTGGGATCGAATCCGCCATGAAGAT
GCCCAAGGAGGAAGTCTGCGAGTTGCAGTTGTCCATGACCATGCGCCGTA
TTTCCTGCTCCTGCTCCTCCTTCTGATCACTAATAAATCAATTTATGCCT
TTGTCCTTCCTACGTCCCGCCCTGGCCACCACTGCTTCCCATCCACCACG
CTCCTCTGCGCCATCCCCATAAGCAAACTTCCTGCAATCGGCCCCTCTTT
CTACGACGACGTCCGCAAACAAGATGCTTGGCTACTACCCTCGACTCTTC
TATCCAGGTCTCTACAACGTCAAGGAGCGAATGCTCAAGTTTTTCGAACC
TGTCTTCTACCTCAAGCCAGCCCAAGGTGGCTTTATCTATAGAAGGTACC
CGGAGGAATGGCAGCAGGTGTTGACGTATTATGATTTCCGGCAGCAGCTG
AGGACGGTGAGGAGGGACGGGCGGACGGAGGAGAAGAAGGAGGTGCTCCG
GAAGGTGGTGGAGACAACGAGGGAGCGGCCGGCCTACAACGATGTGGTGA
ACGCGCTCAAGAAGGAGAGTGCCAGAATGGGGAGGGAGGCCCAGGAAGCG
CAGGAGGAGGAGGAGAGGGTGGAGGCGGCGGAGAGGGAGGCGAAGAGACA
AAGATTAGGATAGGTGGTCGTCACCCCAGGCTTTAATGTTCAAGAATATA
TTAATATGGAGAAGATTCAACGCCCGGGCGTGCCCATGGTGGTCGTCAAT
GGCAACCTCGATCGGATCCGAGGAGCCATAGACGCCGTCCAAGCAGGCCT
TAGAGACGGGCTCGAGCAACTCGAGATCGAATTCCCTATCAGCCCGGGCA
GAATCGATGTATCGTTGGGTGAATTCTTGGATGACTCCCGGGAATGGACG
AGAGAATTCGTGCGACCTTTCACCCCCAAAGGATCAAAGCTGTGGGTAAT
TTTCCCTGATGGCAAGGAGGCGACGCTCGCGAATGAGCGTTGGGGAGGCG
TGAATTTTCGGATAATTGGGATCGAATCCGCCATGAAGATGCCCAAGGAG
GAAGTCTGCGAGTTGCAGTTGTCCATGACCATGCGCCGTATTTCCTGCTC
CTGCTCCTCCTTCTGATCACTAATAAATCAATTTATGCCTTTGTCCTTCC
TACGTCCCGCCCTGGCCACCACTGCTTCCCATCCACCACGCTCCTCTGCG
CCATCCCCATAAGCAAACTTCCTGCAATCGGCCCCTCTTTCTACGACGAC
GTCCGCAAACAAGATGCTTGGCTACTACCCTCGACTCTTCTATCCAGGTC
TCTACAACGTCAAGGAGCGAATGCTCAAGTTTTTCGAACCTGTCTTCTAC
CTCAAGCCAGCCCAAGGTGGCTTTATCTATAGAAGGTACCCGGAGGAATG
GCAGCAGGTGTTGACGTATTATGATTTCCGGCAGCAGCTGAGGACGGTGA
GGAGGGACGGGCGGACGGAGGAGAAGAAGGAGGTGCTCCGGAAGGTGGTG
GAGACAACGAGGGAGCGGCCGGCCTACAACGATGTGGTGAACGCGCTCAA
GAAGGAGAGTGCCAGAATGGGGAGGGAGGCCCAGGAAGCGCAGGAGGAGG
AGGAGAGGGTGGAGGCGGCGGAGAGGGAGGCGAAGAGACAAAGATTAGGA
TAGGTGGTCGTCACCCCAGGCTTTAATGTTCAAGAATATATTAATATGGA
GAAGATTCAACGCCCGGGCGTGCCCATGGTGGTCGTCAATGGCAACCTCG
ATCGGATCCGAGGAGCCATAGACGCCGTCCAAGCAGGCCTTAGAGACGGG
CTCGAGCAACTCGAGATCGAATTCCCTATCAGCCCGGGCAGAATCGATGT
ATCGTTGGGTGAATTCTTGGATGACTCCCGGGAATGGACGAGAGAATTCG
TGCGACCTTTCACCCCCAAAGGATCAAAGCTGTGGGTAATTTTCCCTGAT
GGCAAGGAGGCGACGCTCGCGAATGAGCGTTGGGGAGGCGTGAATTTTCG
GATAATTGGGATCGAATCCGCCATGAAGATGCCCAAGGAGGAAGTCTGCG
AGTTGCAGTTGTCCATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTCC
TTCTGATCACTAATAAATCAATTTATGCCTTTGTCCTTCCTACGTCCCGC
CCTGGCCACCACTGCTTCCCATCCACCACGCTCCTCTGCGCCATCCCCAT
AAGCAAACTTCCTGCAATCGGCCCCTCTTTCTACGACGACGTCCGCAAAC
AAGATGCTTGGCTACTACCCTCGACTCTTCTATCCAGGTCTCTACAACGT
CAAGGAGCGAATGCTCAAGTTTTTCGAACCTGTCTTCTACCTCAAGCCAG
CCCAAGGTGGCTTTATCTATAGAAGGTACCCGGAGGAATGGCAGCAGGTG
TTGACGTATTATGATTTCCGGCAGCAGCTGAGGACGGTGAGGAGGGACGG
GCGGACGGAGGAGAAGAAGGAGGTGCTCCGGAAGGTGGTGGAGACAACGA
GGGAGCGGCCGGCCTACAACGATGTGGTGAACGCGCTCAAGAAGGAGAGT
GCCAGAATGGGGAGGGAGGCCCAGGAAGCGCAGGAGGAGGAGGAGAGGGT
GGAGGCGGCGGAGAGGGAGGCGAAGAGACAAAGATTAGGATAGGTGGTCG
TCACCCCAGGCTTTAATGTTCAAGAATATATTAATATGGAGAAGATTCAA
CGCCCGGGCGTGCCCATGGTGGTCGTCAATGGCAACCTCGATCGGATCCG
AGGAGCCATAGACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAAC
TCGAGATCGAATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGT
GAATTCTTGGATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTT
CACCCCCAAAGGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGG
CGACGCTCGCGAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGG
ATCGAATCCGCCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGTT
GTCCATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTCCTTCTGATCAC
TAATAAATCAATTTATGCCTTTGTCCTTCCTACGTCCCGCCCTGGCCACC
ACTGCTTCCCATCCACCACGCTCCTCTGCGCCATCCCCATAAGCAAACTT
CCTGCAATCGGCCCCTCTTTCTACGACGACGTCCGCAAACAAGATGCTTG back to top
|