jgi.p|Nanoce1779_2|634357, mRNA_10728 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634357
Unique Name	mRNA_10728
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	4315
Alignment location	scaffold_73:14845..19159 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634443
Track	FilteredModels2
ProteinId	634357

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_73	supercontig	scaffold_73:14845..19159 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634357	gene_10728	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634357	mRNA_10728-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10728	CDS_10728	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_73:14845..19159-
coding sequence from alignment at scaffold_73:14845..19159-

mRNA sequence

>mRNA_10728 ID=mRNA_10728|Name=jgi.p|Nanoce1779_2|634357|organism=Nannochloropsis oceanica|type=mRNA|length=4315bp
ATCAACAAAGCGATAGACGAAGAGAACGGGGTGGATAAACACCGAAAAGC
ATGCATCAGCGTCGTGTCTAATTAATCATTCATATGTCTATTTATATGGG
TACATAACGCCAGGGGGGAAAAGCAGGAATTTTGTTTATGTGTGTGCAGG
AAGGAGAGGGAAAGAGCGGCGTGATATGGAGAATGGGGCAACAGTAGCAG
TACCATCATCATAAACGGCAGCAAAAGCAGCATCTGAGCTAGTGAAAGAA
ATACGAAGAGGGAGAAATGAACAGGGCATCACAAGGGATGGGCAGGGTCT
GCTCCAATCGCAAGGTGCTGCGTGAGAAAACGAGCTGTTTGCCCTCTACC
CTTGCCCTGCTCGTTATTTTTAGTGTTTTTTTCGCCTTTTTCCTTCTTCT
TCTTTTTCACTTTTAGAGCTCGATTTCTTCCGCGCGTTCCCTGTCACACA
TCTCCCACCACCGGTGGGCTTGCTAAGCTGTTACTGCTCGCATCTTCGCG
ATTTTTCTTCTTTTGCTTGTTCTGGTTATTCTCGTTACTCTTATTCTGAC
TCTCCTTCATCTTCTTCCTCTGCTTCTTCGTCTGCTTCCTCTTCTTCTTC
TCTATCTTCCTCTCCTTTTTCCTGCCACGGGTGAGATGAGACACTGAGTT
TTATTCAATCCTCTGGTGTCAACCGACACAGTCATACCGCGCGAAGGTGC
ATTCCAATGCGACGGGATCCTGGAAACGGCTTGTGCCCTATGACAAGACA
GAAGCATTCCCTCACCAAAACCACTGGGCCGTCGACATGAAATGCGCCGG
CGGCGTCCTCACTCTATAGCTTATGCGAACCAAAGTCGGCTCTCTCGCCA
GTACGACGAATCGACCGTCGTGTACGATGTGCCGCCCAATATTCTTGAAC
ACAATGTCGAGGATCTTCGCAAAGAGTGTCACGTGATGCGAACGTTGCTT
CAATGTAACGACCATGAGCTTGACTAGAAAATGTCTAAAGTACACCTAGT
GTATTCTTTTACCGTTTCCCTCCCTCCCTTCCTCGCTCCCTCGCTAGCTC
ACACTCTTCTAGAGAAAGGGCAGAGGGAGAGGACTCCTTCTCCATCCTTC
CCTACAGGCAGGGAGGGAGTAAGATATGTGCCATGTATCACATGGCGATA
GCTCGGAGGGAGAGTGAGAGAGGGAGAGAGTTAGGGAGGGAGAAAGGGAA
GAAGGGAAGGAGGGAGAGAGGGAGGAGGGAGAGCGGGAGAAAGGAGAGAG
GACGTACCTATCAGTAGAAGGTCCCAGCGGGCGTCGTCAAGTCGGGAGTG
AATACTTTGTTTTCCTACACGTTGGCCAAGATGGAAGCATAGCACTGGGG
CTTTTTTGGGGGGGGAGACCTCCCCCCCGAAAAAAAGGTAGACAGGAAAA
AAAACAAAAAAACAAGCTGCCCCCCACGAAAAACATATCTTTCAGAAGCA
GTTTCATCCACCTGCTGGTTTTTGGTGAGTATTTGCTTTCTTAGCCCTCC
TCTTAAGTGTCTGTTCTCTCTGTGCAATGTAACAATGTTGTTTTAGGGGC
CCTGGCACTCAACTCTTTGCAGACGTGAACTAACTTAGTTGTTGTTTTTT
TTCTGCGACGGCTCGCCCTCGCTCTCCATATTTACCGCATTACTAGGACG
GAGAAGTCGAACTTTTCCTCTCCTTCGAGCAGTGCCGTCTAGATGTTTGA
GGTGTTTAGATCGACGTCGATTGCATGTTTGTCTGCGCATAGCTACTGTG
CTATGTATGAATTTATGAATTACCGTTGGGCCCATAGCGCAGCCGTCTCA
GCCAGGGTCTGCTGGCAGACCTCTACCATATGTTATCCCCCCCTTTCACA
ACCCGGGCCGTCTTTTGCCCTTCTGCCTCTGACCTTGCCGCTGTTTCCAG
CACGTACTTGCAGCCTTATTGGCCTGTGGGTTAGGAAGAGAGACATGCCT
ATCCCTTTCGCCTTTTGCCACCACAGGCAGGTGCATCGCTATCGGCGTCT
GACATTTGCGCGCCCCCTCCCGTCCCATCTCTTGTCTCGACACTTTTCTT
TTTCACCTATACGTTCCTCCTCTAAGAACCAAAAATCAGACCACATGCAG
CACATCACCCACAGCACTCTCCCACACCCCACTGACCCACCGGTCTGCTG
ATATTGTGTTCGATGCGTAAGTGCCGGTCTCGCCCCTGGTACTTGGGTAG
CCTAAACAATAGCCAGCAGCTGTCGGAAGGCATGACTGATTTGCGACGCA
TGCACACGAACCCGCACGCCTCCTTCCCCTTCCTCCTCTTCCCTCCTCAC
TCTTCCCTCCACACTCCCTTCTCTCTTCTTCCTTTACCTACCATCTTCCC
TCTCTCCTCCTGTCCTTTTTCCCTCTTCTTCACATTTTCTTCCCCTCCCC
CTTCCCCTCTCCTCTTTTTCTTTTTAGCACTCTTCCTGCTTATCTTCGAA
AACCGCGAGCTATATTCGCAAAAGATTGCAGGCCCCTCCTTCCCCCCATC
CACATCCCCCTCCATTCCTCCTTTCAAATTTCTCTTCATTCCTCTCCTTA
ACACCACTTTCGTGTCATCCTCTTATTCCTTCCCGAGCGGGGCCGTCGTA
GTTCATCAGTTCATGTTATGTGTTTGTGGAAGTCCTGAAAAATTGAGATT
ATACCTGTTAGAAAACGAAATTCAAACGAGATGTAACACTTATATGAAAG
TATGCACCTCGTCTCCTACGTGCCCGCCCCCCCCTTCCTCGTAAACCTTA
CCCGTTTCTCCCTTCCATGTCATTTATCCCTGAATGTTCTGCGCCTCCCC
ATCGCCCCTACTCGCACCCATACCCAAATGTCTGCACGAGACACTTGGCG
CACAGAGTGACACAAACAAATAATTCCTGTCACCTCTTCATTTTACCTCG
TCATAGATAGTGCTTACTTAGTAGATACTGAGCGCTGTCTTCAACGTACC
CCTTCTTGGTCCCAGATTGTGCTTCCTAAGTAGATATTGAAGGCTCTCTT
TACCTGACAGCCCTCTTAAGAATCAGTCAAAGAAGTCACCTACCTCCATT
TTACACTTCACAACATCACTGCAAACAGGCATTTCGTGTAAACGTACGTT
TGCATCATGCAACGCATTTTTTCTCTGCTTGCCCTCGGTATTACCCTCGC
CGTTACGGCGGCTCAAAATGAGATAACTCTCACCTCCATCAGGGCAGTCA
GCGCACATAGGGCGAACAAGGACCTGTGGAGTATGAAGGGCTTCTTCAAC
GACCCTGACGGGACAGTTGTGGATGGCATCAGTGATTTTGGAGTGATCGC
AGGGATTGCAGACAAGGACCAAAACACCCTCAATATGGTTCCATACAGAC
CGATTGAGTGCAGATTGCTCAACAACGACAAAGGACTTGTTTGCAAGACT
ACGGGCACCCGCCTCTTGATCAAGACGACCAAAAGGGTTCCGAAGGGCGC
CACAATTCAGGCGCAGAGGAGCCACAACACAACCACATCCTCCTATTACA
TGCTTTCGGGTGTTTTCCGCCGTCAGGAGTTCATTAACGCCACTATATTG
ACGCCTCTTTCTGCTGGCATCTCCATTGATTTCTCCCCTTACGTGAGCAC
CAACACAAAGTGCACAGAGAAAGTTGGAAAGAGGACAAGCAAGTACATCT
GTACGCCTGGTGCTCCTACCCCCGCTCCTACTCCTGGATCAACCACCTAG
AAGGGGTGCCCTGCGTGGCAATGAAGCTTCGGCTTGACCCGCTCTCAAGA
GAGTCTACGAGTATTTATGGATTACGAGTGTGTCATGCTTCTTTTCTCTT
ATATGTTTATGTGTGCGTGCATCAAGTCCTTCTGTTTTGAGAGTGGATGC
CCAATCTTCCCTGCGTAACGCAACGGAATGCGTATCTCCGTAAGGATGTA
TTTTGTATGTCTGTCGTGTGTGTGTTGTGGCGTTAATTTTTATTTCCTTT
CCTAACTTTCAAAAAACCGTTTAGCTAAATGATGTTTTAAGGTCATTGGG
AGTCGCTTACTACGATAATTATGGATTGTGAGATTGACGGATGCTTGTGT
GTATGCGTCCTCTACGACTGTTTTCAGTTTAAATGCTTTCAAATTTCATT
CGCCACGCGTCAAGAGTTGCACTTTCATGATTATCTAGGGTGTGTGTTTG
TGTTGTGTGGTGTATGTGTGAACTTGCTCGCTCCAGTGTCACTTTGCTGT
TCTGATTGCATTGCCTCGGCTGCCCCCGAGAGTCGACCTTTGGATGTATT
CATCGAAGTCTATTGAATGCTATGTGATTATTACAAAAGAAAGAAAACAC
TCTGTGCAGGCAATT

protein sequence of jgi.p|Nanoce1779_2|634357

>mRNA_10728-protein ID=mRNA_10728-protein|Name=jgi.p|Nanoce1779_2|634357|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MQRIFSLLALGITLAVTAAQNEITLTSIRAVSAHRANKDLWSMKGFFNDP
DGTVVDGISDFGVIAGIADKDQNTLNMVPYRPIECRLLNNDKGLVCKTTG
TRLLIKTTKRVPKGATIQAQRSHNTTTSSYYMLSGVFRRQEFINATILTP
LSAGISIDFSPYVSTNTKCTEKVGKRTSKYICTPGAPTPAPTPGSTT*

mRNA from alignment at scaffold_73:14845..19159-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10728 ID=mRNA_10728|Name=jgi.p|Nanoce1779_2|634357|organism=Nannochloropsis oceanica|type=mRNA|length=4315bp|location=Sequence derived from alignment at scaffold_73:14845..19159- (Nannochloropsis oceanica)
ATCAACAAAGCGATAGACGAAGAGAACGGGGTGGATAAACACCGAAAAGC
ATGCATCAGCGTCGTGTCTAATTAATCATTCATATGTCTATTTATATGGG
TACATAACGCCAGGGGGGAAAAGCAGGAATTTTGTTTATGTGTGTGCAGG
AAGGAGAGGGAAAGAGCGGCGTGATATGGAGAATGGGGCAACAGTAGCAG
TACCATCATCATAAACGGCAGCAAAAGCAGCATCTGAGCTAGTGAAAGAA
ATACGAAGAGGGAGAAATGAACAGGGCATCACAAGGGATGGGCAGGGTCT
GCTCCAATCGCAAGGTGCTGCGTGAGAAAACGAGCTGTTTGCCCTCTACC
CTTGCCCTGCTCGTTATTTTTAGTGTTTTTTTCGCCTTTTTCCTTCTTCT
TCTTTTTCACTTTTAGAGCTCGATTTCTTCCGCGCGTTCCCTGTCACACA
TCTCCCACCACCGGTGGGCTTGCTAAGCTGTTACTGCTCGCATCTTCGCG
ATTTTTCTTCTTTTGCTTGTTCTGGTTATTCTCGTTACTCTTATTCTGAC
TCTCCTTCATCTTCTTCCTCTGCTTCTTCGTCTGCTTCCTCTTCTTCTTC
TCTATCTTCCTCTCCTTTTTCCTGCCACGGGTGAGATGAGACACTGAGTT
TTATTCAATCCTCTGGTGTCAACCGACACAGTCATACCGCGCGAAGGTGC
ATTCCAATGCGACGGGATCCTGGAAACGGCTTGTGCCCTATGACAAGACA
GAAGCATTCCCTCACCAAAACCACTGGGCCGTCGACATGAAATGCGCCGG
CGGCGTCCTCACTCTATAGCTTATGCGAACCAAAGTCGGCTCTCTCGCCA
GTACGACGAATCGACCGTCGTGTACGATGTGCCGCCCAATATTCTTGAAC
ACAATGTCGAGGATCTTCGCAAAGAGTGTCACGTGATGCGAACGTTGCTT
CAATGTAACGACCATGAGCTTGACTAGAAAATGTCTAAAGTACACCTAGT
GTATTCTTTTACCGTTTCCCTCCCTCCCTTCCTCGCTCCCTCGCTAGCTC
ACACTCTTCTAGAGAAAGGGCAGAGGGAGAGGACTCCTTCTCCATCCTTC
CCTACAGGCAGGGAGGGAGTAAGATATGTGCCATGTATCACATGGCGATA
GCTCGGAGGGAGAGTGAGAGAGGGAGAGAGTTAGGGAGGGAGAAAGGGAA
GAAGGGAAGGAGGGAGAGAGGGAGGAGGGAGAGCGGGAGAAAGGAGAGAG
GACGTACCTATCAGTAGAAGGTCCCAGCGGGCGTCGTCAAGTCGGGAGTG
AATACTTTGTTTTCCTACACGTTGGCCAAGATGGAAGCATAGCACTGGGG
CTTTTTTGGGGGGGGAGACCTCCCCCCCGAAAAAAAGGTAGACAGGAAAA
AAAACAAAAAAACAAGCTGCCCCCCACGAAAAACATATCTTTCAGAAGCA
GTTTCATCCACCTGCTGGTTTTTGGTGAGTATTTGCTTTCTTAGCCCTCC
TCTTAAGTGTCTGTTCTCTCTGTGCAATGTAACAATGTTGTTTTAGGGGC
CCTGGCACTCAACTCTTTGCAGACGTGAACTAACTTAGTTGTTGTTTTTT
TTCTGCGACGGCTCGCCCTCGCTCTCCATATTTACCGCATTACTAGGACG
GAGAAGTCGAACTTTTCCTCTCCTTCGAGCAGTGCCGTCTAGATGTTTGA
GGTGTTTAGATCGACGTCGATTGCATGTTTGTCTGCGCATAGCTACTGTG
CTATGTATGAATTTATGAATTACCGTTGGGCCCATAGCGCAGCCGTCTCA
GCCAGGGTCTGCTGGCAGACCTCTACCATATGTTATCCCCCCCTTTCACA
ACCCGGGCCGTCTTTTGCCCTTCTGCCTCTGACCTTGCCGCTGTTTCCAG
CACGTACTTGCAGCCTTATTGGCCTGTGGGTTAGGAAGAGAGACATGCCT
ATCCCTTTCGCCTTTTGCCACCACAGGCAGGTGCATCGCTATCGGCGTCT
GACATTTGCGCGCCCCCTCCCGTCCCATCTCTTGTCTCGACACTTTTCTT
TTTCACCTATACGTTCCTCCTCTAAGAACCAAAAATCAGACCACATGCAG
CACATCACCCACAGCACTCTCCCACACCCCACTGACCCACCGGTCTGCTG
ATATTGTGTTCGATGCGTAAGTGCCGGTCTCGCCCCTGGTACTTGGGTAG
CCTAAACAATAGCCAGCAGCTGTCGGAAGGCATGACTGATTTGCGACGCA
TGCACACGAACCCGCACGCCTCCTTCCCCTTCCTCCTCTTCCCTCCTCAC
TCTTCCCTCCACACTCCCTTCTCTCTTCTTCCTTTACCTACCATCTTCCC
TCTCTCCTCCTGTCCTTTTTCCCTCTTCTTCACATTTTCTTCCCCTCCCC
CTTCCCCTCTCCTCTTTTTCTTTTTAGCACTCTTCCTGCTTATCTTCGAA
AACCGCGAGCTATATTCGCAAAAGATTGCAGGCCCCTCCTTCCCCCCATC
CACATCCCCCTCCATTCCTCCTTTCAAATTTCTCTTCATTCCTCTCCTTA
ACACCACTTTCGTGTCATCCTCTTATTCCTTCCCGAGCGGGGCCGTCGTA
GTTCATCAGTTCATGTTATGTGTTTGTGGAAGTCCTGAAAAATTGAGATT
ATACCTGTTAGAAAACGAAATTCAAACGAGATGTAACACTTATATGAAAG
TATGCACCTCGTCTCCTACGTGCCCGCCCCCCCCTTCCTCGTAAACCTTA
CCCGTTTCTCCCTTCCATGTCATTTATCCCTGAATGTTCTGCGCCTCCCC
ATCGCCCCTACTCGCACCCATACCCAAATGTCTGCACGAGACACTTGGCG
CACAGAGTGACACAAACAAATAATTCCTGTCACCTCTTCATTTTACCTCG
TCATAGATAGTGCTTACTTAGTAGATACTGAGCGCTGTCTTCAACGTACC
CCTTCTTGGTCCCAGATTGTGCTTCCTAAGTAGATATTGAAGGCTCTCTT
TACCTGACAGCCCTCTTAAGAATCAGTCAAAGAAGTCACCTACCTCCATT
TTACACTTCACAACATCACTGCAAACAGGCATTTCGTGTAAACGTACGTT
TGCATCATGCAACGCATTTTTTCTCTGCTTGCCCTCGGTATTACCCTCGC
CGTTACGGCGGCTCAAAATGAGATAACTCTCACCTCCATCAGGGCAGTCA
GCGCACATAGGGCGAACAAGGACCTGTGGAGTATGAAGGGCTTCTTCAAC
GACCCTGACGGGACAGTTGTGGATGGCATCAGTGATTTTGGAGTGATCGC
AGGGATTGCAGACAAGGACCAAAACACCCTCAATATGGTTCCATACAGAC
CGATTGAGTGCAGATTGCTCAACAACGACAAAGGACTTGTTTGCAAGACT
ACGGGCACCCGCCTCTTGATCAAGACGACCAAAAGGGTTCCGAAGGGCGC
CACAATTCAGGCGCAGAGGAGCCACAACACAACCACATCCTCCTATTACA
TGCTTTCGGGTGTTTTCCGCCGTCAGGAGTTCATTAACGCCACTATATTG
ACGCCTCTTTCTGCTGGCATCTCCATTGATTTCTCCCCTTACGTGAGCAC
CAACACAAAGTGCACAGAGAAAGTTGGAAAGAGGACAAGCAAGTACATCT
GTACGCCTGGTGCTCCTACCCCCGCTCCTACTCCTGGATCAACCACCTAG
AAGGGGTGCCCTGCGTGGCAATGAAGCTTCGGCTTGACCCGCTCTCAAGA
GAGTCTACGAGTATTTATGGATTACGAGTGTGTCATGCTTCTTTTCTCTT
ATATGTTTATGTGTGCGTGCATCAAGTCCTTCTGTTTTGAGAGTGGATGC
CCAATCTTCCCTGCGTAACGCAACGGAATGCGTATCTCCGTAAGGATGTA
TTTTGTATGTCTGTCGTGTGTGTGTTGTGGCGTTAATTTTTATTTCCTTT
CCTAACTTTCAAAAAACCGTTTAGCTAAATGATGTTTTAAGGTCATTGGG
AGTCGCTTACTACGATAATTATGGATTGTGAGATTGACGGATGCTTGTGT
GTATGCGTCCTCTACGACTGTTTTCAGTTTAAATGCTTTCAAATTTCATT
CGCCACGCGTCAAGAGTTGCACTTTCATGATTATCTAGGGTGTGTGTTTG
TGTTGTGTGGTGTATGTGTGAACTTGCTCGCTCCAGTGTCACTTTGCTGT
TCTGATTGCATTGCCTCGGCTGCCCCCGAGAGTCGACCTTTGGATGTATT
CATCGAAGTCTATTGAATGCTATGTGATTATTACAAAAGAAAGAAAACAC
TCTGTGCAGGCAATT

Coding sequence (CDS) from alignment at scaffold_73:14845..19159-

>mRNA_10728 ID=mRNA_10728|Name=jgi.p|Nanoce1779_2|634357|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_73:14845..19159- (Nannochloropsis oceanica)
ATGCAACGCATTTTTTCTCTGCTTGCCCTCGGTATTACCCTCGCCGTTAC
GGCGGCTCAAAATGAGATAACTCTCACCTCCATCAGGGCAGTCAGCGCAC
ATAGGGCGAACAAGGACCTGTGGAGTATGAAGGGCTTCTTCAACGACCCT
GACGGGACAGTTGTGGATGGCATCAGTGATTTTGGAGTGATCGCAGGGAT
TGCAGACAAGGACCAAAACACCCTCAATATGGTTCCATACAGACCGATTG
AGTGCAGATTGCTCAACAACGACAAAGGACTTGTTTGCAAGACTACGGGC
ACCCGCCTCTTGATCAAGACGACCAAAAGGGTTCCGAAGGGCGCCACAAT
TCAGGCGCAGAGGAGCCACAACACAACCACATCCTCCTATTACATGCTTT
CGGGTGTTTTCCGCCGTCAGGAGTTCATTAACGCCACTATATTGACGCCT
CTTTCTGCTGGCATCTCCATTGATTTCTCCCCTTACGTGAGCACCAACAC
AAAGTGCACAGAGAAAGTTGGAAAGAGGACAAGCAAGTACATCTGTACGC
CTGGTGCTCCTACCCCCGCTCCTACTCCTGGATCAACCACCTAG

Synonyms

Publications