jgi.p|Nanoce1779_2|585875, mRNA_3933 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585875
Unique Name	mRNA_3933
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1671
Alignment location	scaffold_8:430803..432473 +

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Properties


Property Name	Value
TranscriptId	585961
Track	FilteredModels2
ProteinId	585875

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:430803..432473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585875	gene_3933	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585875	mRNA_3933-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3933	CDS_3933	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:430803..432473+
coding sequence from alignment at scaffold_8:430803..432473+

mRNA sequence

>mRNA_3933 ID=mRNA_3933|Name=jgi.p|Nanoce1779_2|585875|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
GGGAGGGAGGGAGGGAGGGAGGGCGAGGACGAGCATGTCCGTGAAGAGGT
AAGCTTCACGGTGGTGCCATGCACTGCCCCACAGCTTCCCTTCTTGAAAG
AGACGAAGGGACCCGCGATATATCAAGGAACGCTTCCCATACGCATCCAG
AGGAAGGGAAGGCGAGGAAGAGGACGAGGGCGAGGAGGGGGTGTAGGGTT
CGAACTGCCTGCCGGTTGGACGGAGGTGTCGCCGGGCCACGAAATCCAGG
TGGCGCTCGAGGAGGCTCATGTCGTAGAGGGGGGGGGGCGGGGGAGAGGG
GAGGAGAAGACGAAGCAGAACCCCCCCCCTCATTTTCTCCTCTTCCCGAG
GGAGGTGAGGCTGAAGAAGGGGAGGAGGAAGCATCGTTCTTCCTCCTTTC
CTCCCTCTTGTGTTTCCGCACCACTGTCACTTTCAGGGGCCTTGGGCTTG
TCTTTATGAACTCAACCATCTCTCCCCAACTATCACTATCCAGCACTCTT
TCACGCAGATCCCACTTTGCCATTGGTTTTGATTTCGAACTTGAATTCTC
AAACTTTGTTTCACTCACGTTTTCGATCATTAGAATGATGTCACCCGGTT
CGACCCCATTGCGATTCGTTCGGGTGTGAGGGAGGAGGCGCAAGACGTGG
GCTTGTCCCGAGGGAGTCCGTTTGATTGTGATCCCCAAATCGCTTTCTTG
GAAGAGAATGGTGTGTGTAGTGCTATTGCCGTAATAACTGCTGCTGCTGC
TCTTAGTGCTGCTGATGACGCTTGAGTGGGGAGACGGCGGGAGAGGGGGA
GGGGGGGAGGCGACGGCGTGAACGAGGGAGGATATGGTGATATAGAGGCT
GATGTGCTGCTGCTGCTTCTTCAGTGGATGCTGTAGATGCTCGTTGATTT
CCTCTTCGTCTTGGCTGAGGTAGAGGTGGTAGAAGGGAGAGAGACGAGGA
GGGGGAGGGGTCTTTGGGGAATGAAAGGAAAGGGAGGGAGAGGGGGACGA
GGGCTGCGATCTATCCCTGTTCTTGTTGTAGCCGTTGGAAAGGGAAAAAG
TAGAAGAGGAGGAAGTGAAGGAGGCATCCTCCCAAAAAGGCGGTACATGC
AACCCCTCGTCTTTGTCTTCTGCTTTTCGAGCCACCAATCTTCCCCCTCC
TCCATTTCTCCCGCCCACTGGCACAAGAACTACCGAATCTCCCACATGCA
GTCCTCCTCCTTCTCCTATCTCCCTTCCTTCCCCCTCATCTTCCACTGGC
GCTGTAGCAGTCGAGGGAGGTGCTGCTACCACAAACACCTGTTTCTTCTC
TTCTACGTCGTCTTCATCCACCCATTGCAGTTGTTGTTGTTGTTGCTGCT
GCTGCTCAAATCCTTTCTCTGTCGTAGCAGCAGCAGCAGTACTATCAATA
GTTGATGGAGTTGTTGTAGATGGTGGTGGTGGTGCAGTAGTACTCGTAGA
AGGAGGAGTAGTAGACGTAGTAGTACTAGCCCAAGCCAAGAACCCACCAG
CCATACTTATGGTAATCACATCCCCGATCTCTAACCTTTTGTTCCGTTGT
CCAGGCGTATCTTTTGTGCTGCTGTAGTTCTGGAAGCAGACAGCGGCAAA
CTCGTCGTCGTTGTTACTGCTGCCGCTGCTGCTGCCGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGC

protein sequence of jgi.p|Nanoce1779_2|585875

>mRNA_3933-protein ID=mRNA_3933-protein|Name=jgi.p|Nanoce1779_2|585875|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MLVDFLFVLAEVEVVEGRETRRGRGLWGMKGKGGRGGRGLRSIPVLVVAV
GKGKSRRGGSEGGILPKRRYMQPLVFVFCFSSHQSSPSSISPAHWHKNYR
ISHMQSSSFSYLPSFPLIFHWRCSSRGRCCYHKHLFLLFYVVFIHPLQLL
LLLLLLLKSFLCRSSSSSTINS*

mRNA from alignment at scaffold_8:430803..432473+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3933 ID=mRNA_3933|Name=jgi.p|Nanoce1779_2|585875|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_8:430803..432473+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGCGAGGACGAGCATGTCCGTGAAGAGGT
AAGCTTCACGGTGGTGCCATGCACTGCCCCACAGCTTCCCTTCTTGAAAG
AGACGAAGGGACCCGCGATATATCAAGGAACGCTTCCCATACGCATCCAG
AGGAAGGGAAGGCGAGGAAGAGGACGAGGGCGAGGAGGGGGTGTAGGGTT
CGAACTGCCTGCCGGTTGGACGGAGGTGTCGCCGGGCCACGAAATCCAGG
TGGCGCTCGAGGAGGCTCATGTCGTAGAGGGGGGGGGGCGGGGGAGAGGG
GAGGAGAAGACGAAGCAGAACCCCCCCCCTCATTTTCTCCTCTTCCCGAG
GGAGGTGAGGCTGAAGAAGGGGAGGAGGAAGCATCGTTCTTCCTCCTTTC
CTCCCTCTTGTGTTTCCGCACCACTGTCACTTTCAGGGGCCTTGGGCTTG
TCTTTATGAACTCAACCATCTCTCCCCAACTATCACTATCCAGCACTCTT
TCACGCAGATCCCACTTTGCCATTGGTTTTGATTTCGAACTTGAATTCTC
AAACTTTGTTTCACTCACGTTTTCGATCATTAGAATGATGTCACCCGGTT
CGACCCCATTGCGATTCGTTCGGGTGTGAGGGAGGAGGCGCAAGACGTGG
GCTTGTCCCGAGGGAGTCCGTTTGATTGTGATCCCCAAATCGCTTTCTTG
GAAGAGAATGGTGTGTGTAGTGCTATTGCCGTAATAACTGCTGCTGCTGC
TCTTAGTGCTGCTGATGACGCTTGAGTGGGGAGACGGCGGGAGAGGGGGA
GGGGGGGAGGCGACGGCGTGAACGAGGGAGGATATGGTGATATAGAGGCT
GATGTGCTGCTGCTGCTTCTTCAGTGGATGCTGTAGATGCTCGTTGATTT
CCTCTTCGTCTTGGCTGAGGTAGAGGTGGTAGAAGGGAGAGAGACGAGGA
GGGGGAGGGGTCTTTGGGGAATGAAAGGAAAGGGAGGGAGAGGGGGACGA
GGGCTGCGATCTATCCCTGTTCTTGTTGTAGCCGTTGGAAAGGGAAAAAG
TAGAAGAGGAGGAAGTGAAGGAGGCATCCTCCCAAAAAGGCGGTACATGC
AACCCCTCGTCTTTGTCTTCTGCTTTTCGAGCCACCAATCTTCCCCCTCC
TCCATTTCTCCCGCCCACTGGCACAAGAACTACCGAATCTCCCACATGCA
GTCCTCCTCCTTCTCCTATCTCCCTTCCTTCCCCCTCATCTTCCACTGGC
GCTGTAGCAGTCGAGGGAGGTGCTGCTACCACAAACACCTGTTTCTTCTC
TTCTACGTCGTCTTCATCCACCCATTGCAGTTGTTGTTGTTGTTGCTGCT
GCTGCTCAAATCCTTTCTCTGTCGTAGCAGCAGCAGCAGTACTATCAATA
GTTGATGGAGTTGTTGTAGATGGTGGTGGTGGTGCAGTAGTACTCGTAGA
AGGAGGAGTAGTAGACGTAGTAGTACTAGCCCAAGCCAAGAACCCACCAG
CCATACTTATGGTAATCACATCCCCGATCTCTAACCTTTTGTTCCGTTGT
CCAGGCGTATCTTTTGTGCTGCTGTAGTTCTGGAAGCAGACAGCGGCAAA
CTCGTCGTCGTTGTTACTGCTGCCGCTGCTGCTGCCGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGC

Coding sequence (CDS) from alignment at scaffold_8:430803..432473+

>mRNA_3933 ID=mRNA_3933|Name=jgi.p|Nanoce1779_2|585875|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_8:430803..432473+ (Nannochloropsis oceanica)
ATGCTCGTTGATTTCCTCTTCGTCTTGGCTGAGGTAGAGGTGGTAGAAGG
GAGAGAGACGAGGAGGGGGAGGGGTCTTTGGGGAATGAAAGGAAAGGGAG
GGAGAGGGGGACGAGGGCTGCGATCTATCCCTGTTCTTGTTGTAGCCGTT
GGAAAGGGAAAAAGTAGAAGAGGAGGAAGTGAAGGAGGCATCCTCCCAAA
AAGGCGGTACATGCAACCCCTCGTCTTTGTCTTCTGCTTTTCGAGCCACC
AATCTTCCCCCTCCTCCATTTCTCCCGCCCACTGGCACAAGAACTACCGA
ATCTCCCACATGCAGTCCTCCTCCTTCTCCTATCTCCCTTCCTTCCCCCT
CATCTTCCACTGGCGCTGTAGCAGTCGAGGGAGGTGCTGCTACCACAAAC
ACCTGTTTCTTCTCTTCTACGTCGTCTTCATCCACCCATTGCAGTTGTTG
TTGTTGTTGCTGCTGCTGCTCAAATCCTTTCTCTGTCGTAGCAGCAGCAG
CAGTACTATCAATAGTTGA

Synonyms

Publications