jgi.p|Nanoce1779_2|638696, mRNA_4168 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638696
Unique NamemRNA_4168
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length639
Alignment locationscaffold_8:1008217..1009384 +

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Properties
Property NameValue
TranscriptId638782
TrackFilteredModels2
ProteinId638696
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1008217..1009384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638696gene_4168Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638696mRNA_4168-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4168CDS_4168Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4168 ID=mRNA_4168|Name=jgi.p|Nanoce1779_2|638696|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGGACGGCGTGGGTCGGGCCGGCGCCGTGCTAGGACAGCTGGGTGGTGC
TTTGGCGGCTTTGGCGGTGCTGGGTTTGCCCGTTGCTCCCGCTGTTGCCG
AGACACGTCAACTGGAATACATGCCCAGCATTGAAGGCCGAGGCTACGGC
AAAGCCCGCACCAAGTACCCTGATTTCGTCCAGACCGCTTCGGGCCTGCA
GTATAAGGATGTCCGGGAGGGCAAGGGCAATTCGCCCACTGTTGGAGACA
GGGTTGTGATTGATTGGGAGGGGTACACCATCGGCTACTACGGCCGGCCA
TACGAAGCCAAGGGCAAGACCAAGGGCGGTGCCTTCGATGCTGCCGACAA
GGAATATCTTCGTTTTGTCCTGGGCAAGACACCCATGATTCCCGCGTTGG
AGGAAGCACTAACCACCATGAAGCCCGGTGGAATCCGACAGGTGGTGGTG
CCTGCTGAGCTAGGCTACCCGGCAAACGACCCGAAGCACGATCGGGTGGG
GCCCAAGCCCTCCACGTTCTCAGGGCAGAGAGCACTGGATTTCGTACTCA
CAAACCAGGGACTGGTGGACAAAACGCTGTTGATCAATGTAGAGCTTAAG
CGCGTGGACAAGCCGGGGGAACGCGGGTTTAAGGGCTAG
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protein sequence of jgi.p|Nanoce1779_2|638696

>mRNA_4168-protein ID=mRNA_4168-protein|Name=jgi.p|Nanoce1779_2|638696|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MDGVGRAGAVLGQLGGALAALAVLGLPVAPAVAETRQLEYMPSIEGRGYG
KARTKYPDFVQTASGLQYKDVREGKGNSPTVGDRVVIDWEGYTIGYYGRP
YEAKGKTKGGAFDAADKEYLRFVLGKTPMIPALEEALTTMKPGGIRQVVV
PAELGYPANDPKHDRVGPKPSTFSGQRALDFVLTNQGLVDKTLLINVELK
RVDKPGERGFKG*
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mRNA from alignment at scaffold_8:1008217..1009384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4168 ID=mRNA_4168|Name=jgi.p|Nanoce1779_2|638696|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp|location=Sequence derived from alignment at scaffold_8:1008217..1009384+ (Nannochloropsis oceanica)
ATGGACGGCGTGGGTCGGGCCGGCGCCGTGCTAGGACAGCTGGGTGGTGC
TTTGGCGGCTTTGGCGGTGCTGGGTTTGCCCGTTGCTCCCGCTGGTACGT
TGAATAAGGCATGCACCCTATCATCCTCCGTCCCTCCACCCTAACCCACC
TTTATGCCCTCCTCCTTTTCTTCTCCCAGTTGCCGAGACACGTCAACTGG
AATACATGCCCAGCATTGAAGGCCGAGGCTACGGCAAAGCCCGCACCAAG
TACCCTGATTTCGTCCAGACCGCTTCGGGCCTGCAGTATAAGGATGTCCG
GGAGGGCAAGGGCAATTCGCCCACTGTTGGAGACAGGGTTGTGATTGATT
GGGAGGGGTACACCATCGGGTAAGAATCGAGAGAAGGGAGGAAGGGAGGA
AGCGAGGGAAGAGAATTATGTTGACACTGGCACTGTCACAGTCATTCCCT
CTGTTCCAATCTCACATGTCACATTCCCTCCCTTCCTCCCTTCCTCCCTT
CCTCCCTTCCTCCTTCCCTCCGTCCCTCCCGCAGCTACTACGGCCGGCCA
TACGAAGCCAAGGGCAAGACCAAGGGCGGTGCCTTCGATGCTGCCGACAA
GGAATATCTTCGTTTTGTCCTGGGCAAGACACCCATGATTCCCGCGTTGG
AGGAAGCACTAACCACCATGAAGCCCGGTGGAATCCGACAGGTAGGATTT
GGACCTTTCCTTTCCCCCCTCCCTATCTACACCTCATCCATCCCTCCATG
CCTCCATTCCTTCCTTCCTCTCCTCGTTCTCAGGTGGTGGTGCCTGCTGA
GCTAGGCTACCCGGCAAACGACCCGAAGCACGATCGGGTGGGGCCCAAGC
CCTCCACGTTCTCAGGGCAGAGAGCACTGGATTTCGTACTCACAAACCAG
GGACTGGTGGACAAAACGGTAAGAAAACGATTTTCCCGCCGTTTGTTTCT
TTACTACTGATCTGTTTGTTATAAGAATTACATTATTGGGTGTGGTTTTC
GCGCCCCATCCTTTAAATCTCTCTTTCTTCTTTTCCTTCTTCTGTGTTTC
ATCCCACTGAATTTTTCCCTTCTCCCCCCCTCTCTCTCTTCCTCCTACTC
CACAGCTGTTGATCAATGTAGAGCTTAAGCGCGTGGACAAGCCGGGGGAA
CGCGGGTTTAAGGGCTAG
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Coding sequence (CDS) from alignment at scaffold_8:1008217..1009384+

>mRNA_4168 ID=mRNA_4168|Name=jgi.p|Nanoce1779_2|638696|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_8:1008217..1009384+ (Nannochloropsis oceanica)
ATGGACGGCGTGGGTCGGGCCGGCGCCGTGCTAGGACAGCTGGGTGGTGC
TTTGGCGGCTTTGGCGGTGCTGGGTTTGCCCGTTGCTCCCGCTGTTGCCG
AGACACGTCAACTGGAATACATGCCCAGCATTGAAGGCCGAGGCTACGGC
AAAGCCCGCACCAAGTACCCTGATTTCGTCCAGACCGCTTCGGGCCTGCA
GTATAAGGATGTCCGGGAGGGCAAGGGCAATTCGCCCACTGTTGGAGACA
GGGTTGTGATTGATTGGGAGGGGTACACCATCGGCTACTACGGCCGGCCA
TACGAAGCCAAGGGCAAGACCAAGGGCGGTGCCTTCGATGCTGCCGACAA
GGAATATCTTCGTTTTGTCCTGGGCAAGACACCCATGATTCCCGCGTTGG
AGGAAGCACTAACCACCATGAAGCCCGGTGGAATCCGACAGGTGGTGGTG
CCTGCTGAGCTAGGCTACCCGGCAAACGACCCGAAGCACGATCGGGTGGG
GCCCAAGCCCTCCACGTTCTCAGGGCAGAGAGCACTGGATTTCGTACTCA
CAAACCAGGGACTGGTGGACAAAACGCTGTTGATCAATGTAGAGCTTAAG
CGCGTGGACAAGCCGGGGGAACGCGGGTTTAAGGGCTAGATGGACGGCGT
GGGTCGGGCCGGCGCCGTGCTAGGACAGCTGGGTGGTGCTTTGGCGGCTT
TGGCGGTGCTGGGTTTGCCCGTTGCTCCCGCTGTTGCCGAGACACGTCAA
CTGGAATACATGCCCAGCATTGAAGGCCGAGGCTACGGCAAAGCCCGCAC
CAAGTACCCTGATTTCGTCCAGACCGCTTCGGGCCTGCAGTATAAGGATG
TCCGGGAGGGCAAGGGCAATTCGCCCACTGTTGGAGACAGGGTTGTGATT
GATTGGGAGGGGTACACCATCGGCTACTACGGCCGGCCATACGAAGCCAA
GGGCAAGACCAAGGGCGGTGCCTTCGATGCTGCCGACAAGGAATATCTTC
GTTTTGTCCTGGGCAAGACACCCATGATTCCCGCGTTGGAGGAAGCACTA
ACCACCATGAAGCCCGGTGGAATCCGACAGGTGGTGGTGCCTGCTGAGCT
AGGCTACCCGGCAAACGACCCGAAGCACGATCGGGTGGGGCCCAAGCCCT
CCACGTTCTCAGGGCAGAGAGCACTGGATTTCGTACTCACAAACCAGGGA
CTGGTGGACAAAACGCTGTTGATCAATGTAGAGCTTAAGCGCGTGGACAA
GCCGGGGGAACGCGGGTTTAAGGGCTAGATGGACGGCGTGGGTCGGGCCG
GCGCCGTGCTAGGACAGCTGGGTGGTGCTTTGGCGGCTTTGGCGGTGCTG
GGTTTGCCCGTTGCTCCCGCTGTTGCCGAGACACGTCAACTGGAATACAT
GCCCAGCATTGAAGGCCGAGGCTACGGCAAAGCCCGCACCAAGTACCCTG
ATTTCGTCCAGACCGCTTCGGGCCTGCAGTATAAGGATGTCCGGGAGGGC
AAGGGCAATTCGCCCACTGTTGGAGACAGGGTTGTGATTGATTGGGAGGG
GTACACCATCGGCTACTACGGCCGGCCATACGAAGCCAAGGGCAAGACCA
AGGGCGGTGCCTTCGATGCTGCCGACAAGGAATATCTTCGTTTTGTCCTG
GGCAAGACACCCATGATTCCCGCGTTGGAGGAAGCACTAACCACCATGAA
GCCCGGTGGAATCCGACAGGTGGTGGTGCCTGCTGAGCTAGGCTACCCGG
CAAACGACCCGAAGCACGATCGGGTGGGGCCCAAGCCCTCCACGTTCTCA
GGGCAGAGAGCACTGGATTTCGTACTCACAAACCAGGGACTGGTGGACAA
AACGCTGTTGATCAATGTAGAGCTTAAGCGCGTGGACAAGCCGGGGGAAC
GCGGGTTTAAGGGCTAGATGGACGGCGTGGGTCGGGCCGGCGCCGTGCTA
GGACAGCTGGGTGGTGCTTTGGCGGCTTTGGCGGTGCTGGGTTTGCCCGT
TGCTCCCGCTGTTGCCGAGACACGTCAACTGGAATACATGCCCAGCATTG
AAGGCCGAGGCTACGGCAAAGCCCGCACCAAGTACCCTGATTTCGTCCAG
ACCGCTTCGGGCCTGCAGTATAAGGATGTCCGGGAGGGCAAGGGCAATTC
GCCCACTGTTGGAGACAGGGTTGTGATTGATTGGGAGGGGTACACCATCG
GCTACTACGGCCGGCCATACGAAGCCAAGGGCAAGACCAAGGGCGGTGCC
TTCGATGCTGCCGACAAGGAATATCTTCGTTTTGTCCTGGGCAAGACACC
CATGATTCCCGCGTTGGAGGAAGCACTAACCACCATGAAGCCCGGTGGAA
TCCGACAGGTGGTGGTGCCTGCTGAGCTAGGCTACCCGGCAAACGACCCG
AAGCACGATCGGGTGGGGCCCAAGCCCTCCACGTTCTCAGGGCAGAGAGC
ACTGGATTTCGTACTCACAAACCAGGGACTGGTGGACAAAACGCTGTTGA
TCAATGTAGAGCTTAAGCGCGTGGACAAGCCGGGGGAACGCGGGTTTAAG
GGCTAGATGGACGGCGTGGGTCGGGCCGGCGCCGTGCTAGGACAGCTGGG
TGGTGCTTTGGCGGCTTTGGCGGTGCTGGGTTTGCCCGTTGCTCCCGCTG
TTGCCGAGACACGTCAACTGGAATACATGCCCAGCATTGAAGGCCGAGGC
TACGGCAAAGCCCGCACCAAGTACCCTGATTTCGTCCAGACCGCTTCGGG
CCTGCAGTATAAGGATGTCCGGGAGGGCAAGGGCAATTCGCCCACTGTTG
GAGACAGGGTTGTGATTGATTGGGAGGGGTACACCATCGGCTACTACGGC
CGGCCATACGAAGCCAAGGGCAAGACCAAGGGCGGTGCCTTCGATGCTGC
CGACAAGGAATATCTTCGTTTTGTCCTGGGCAAGACACCCATGATTCCCG
CGTTGGAGGAAGCACTAACCACCATGAAGCCCGGTGGAATCCGACAGGTG
GTGGTGCCTGCTGAGCTAGGCTACCCGGCAAACGACCCGAAGCACGATCG
GGTGGGGCCCAAGCCCTCCACGTTCTCAGGGCAGAGAGCACTGGATTTCG
TACTCACAAACCAGGGACTGGTGGACAAAACGCTGTTGATCAATGTAGAG
CTTAAGCGCGTGGACAAGCCGGGGGAACGCGGGTTTAAGGGCTAG
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Synonyms
Publications