jgi.p|Nanoce1779_2|586813, mRNA_4173 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586813
Unique NamemRNA_4173
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length823
Alignment locationscaffold_8:1029474..1030296 -

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Properties
Property NameValue
TranscriptId586899
TrackFilteredModels2
ProteinId586813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1029474..1030296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586813gene_4173Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586813mRNA_4173-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4173CDS_4173Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4173 ID=mRNA_4173|Name=jgi.p|Nanoce1779_2|586813|organism=Nannochloropsis oceanica|type=mRNA|length=823bp
TATTGCCCTGTGCTGTTTCGGTGGTTACTTTCGCTGCCAACTATTGACTG
TATGTGGAAGGCACGTGCTTGCTGGCCTTGATGGGCGCCGCCGCATCTTC
CTCGTAACCACCATACCTTACAAACGTTTTCATCCACGCATTCGTCGACT
CGACTGAAGTCTCTCTAACTATAAGCGACAGCTTTCACCCGTCACTCCCC
GAGCGGAACCCCATGCCCACCACCATTACAATATCCGGAAGGGGTGATGG
AGGATGCCCCCGGCTACAAATAAACCATTCATGGGCGACCCAAATAAAGT
TAAATATAAACAGATGCGGTCTGTTTTTAAGTGCGTTGCCGATTCGTTTT
CGGGGTATGCATGTGCCTTAATTACATAACCCTCTTTCCCCTTCTCTTTT
CCACTATGTTTTCACCGTCTCCGCCTTTTTCCTCTTCATCTCTTTTCTTC
AACCAGCCATCCTTCACCAAACGCCCTCCCTACCTTCATTCCATCGTACC
TCATGGCGACTCAATCACCTCCCCCTTCTCATTCACAAACTTCGCCCACC
CCTCTCCGTCCACCTTCAAACTCCTCCCCTTCCAACGGTCTTTCCACCCG
CCCTCCTCCTCCTCTCGTCCTCCCCCCCCCCGCGCTTCCCATGCCAACCC
TCCCTTTCCCTCCACACCTCGTACCCTCACCCCCCTCCCCTTCCTCCTCC
TCCCCTCCCTGACTAGATCGTATAAAGTGTTCGTCATCATCCTCGCTCCT
ATCTCATTCATTGTCACTTCATACAAATAGGCTCCAAACATTCCTAGCAC
CAGTTCCCTCAAATCCCCTAACG
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protein sequence of jgi.p|Nanoce1779_2|586813

>mRNA_4173-protein ID=mRNA_4173-protein|Name=jgi.p|Nanoce1779_2|586813|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MCLNYITLFPLLFSTMFSPSPPFSSSSLFFNQPSFTKRPPYLHSIVPHGD
SITSPFSFTNFAHPSPSTFKLLPFQRSFHPPSSSSRPPPPRASHANPPFP
STPRTLTPLPFLLLPSLTRSYKVFVIILAPISFIVTSYK*
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mRNA from alignment at scaffold_8:1029474..1030296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4173 ID=mRNA_4173|Name=jgi.p|Nanoce1779_2|586813|organism=Nannochloropsis oceanica|type=mRNA|length=823bp|location=Sequence derived from alignment at scaffold_8:1029474..1030296- (Nannochloropsis oceanica)
TATTGCCCTGTGCTGTTTCGGTGGTTACTTTCGCTGCCAACTATTGACTG
TATGTGGAAGGCACGTGCTTGCTGGCCTTGATGGGCGCCGCCGCATCTTC
CTCGTAACCACCATACCTTACAAACGTTTTCATCCACGCATTCGTCGACT
CGACTGAAGTCTCTCTAACTATAAGCGACAGCTTTCACCCGTCACTCCCC
GAGCGGAACCCCATGCCCACCACCATTACAATATCCGGAAGGGGTGATGG
AGGATGCCCCCGGCTACAAATAAACCATTCATGGGCGACCCAAATAAAGT
TAAATATAAACAGATGCGGTCTGTTTTTAAGTGCGTTGCCGATTCGTTTT
CGGGGTATGCATGTGCCTTAATTACATAACCCTCTTTCCCCTTCTCTTTT
CCACTATGTTTTCACCGTCTCCGCCTTTTTCCTCTTCATCTCTTTTCTTC
AACCAGCCATCCTTCACCAAACGCCCTCCCTACCTTCATTCCATCGTACC
TCATGGCGACTCAATCACCTCCCCCTTCTCATTCACAAACTTCGCCCACC
CCTCTCCGTCCACCTTCAAACTCCTCCCCTTCCAACGGTCTTTCCACCCG
CCCTCCTCCTCCTCTCGTCCTCCCCCCCCCCGCGCTTCCCATGCCAACCC
TCCCTTTCCCTCCACACCTCGTACCCTCACCCCCCTCCCCTTCCTCCTCC
TCCCCTCCCTGACTAGATCGTATAAAGTGTTCGTCATCATCCTCGCTCCT
ATCTCATTCATTGTCACTTCATACAAATAGGCTCCAAACATTCCTAGCAC
CAGTTCCCTCAAATCCCCTAACG
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Coding sequence (CDS) from alignment at scaffold_8:1029474..1030296-

>mRNA_4173 ID=mRNA_4173|Name=jgi.p|Nanoce1779_2|586813|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_8:1029474..1030296- (Nannochloropsis oceanica)
ATGTGCCTTAATTACATAACCCTCTTTCCCCTTCTCTTTTCCACTATGTT
TTCACCGTCTCCGCCTTTTTCCTCTTCATCTCTTTTCTTCAACCAGCCAT
CCTTCACCAAACGCCCTCCCTACCTTCATTCCATCGTACCTCATGGCGAC
TCAATCACCTCCCCCTTCTCATTCACAAACTTCGCCCACCCCTCTCCGTC
CACCTTCAAACTCCTCCCCTTCCAACGGTCTTTCCACCCGCCCTCCTCCT
CCTCTCGTCCTCCCCCCCCCCGCGCTTCCCATGCCAACCCTCCCTTTCCC
TCCACACCTCGTACCCTCACCCCCCTCCCCTTCCTCCTCCTCCCCTCCCT
GACTAGATCGTATAAAGTGTTCGTCATCATCCTCGCTCCTATCTCATTCA
TTGTCACTTCATACAAATAG
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Synonyms
Publications