jgi.p|Nanoce1779_2|670603, mRNA_4885 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670603
Unique NamemRNA_4885
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length520
Alignment locationscaffold_9:888542..889789 +

Link to JBrowse

Properties
Property NameValue
TranscriptId670689
TrackFilteredModels2
ProteinId670603
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:888542..889789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670603gene_4885Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670603mRNA_4885-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4885CDS_4885Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4885 ID=mRNA_4885|Name=jgi.p|Nanoce1779_2|670603|organism=Nannochloropsis oceanica|type=mRNA|length=520bp
AGCCACGCACCATCATCGTAGGTACAGCATGTTCGCCTCACGTCGTGCCC
TCTTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCTTCCTTT
CCCCCGCCTGGCGGCAGGAATCCTTGGCTGACCGATAAGAGTATGTACCC
GCTCGTAGGCATTACAGCCGCAACAGTCCTTTTAGGGGCTTGGTACGGGC
CTCACTATTTGTACACCTCGCCCGAAAAACAAGCCCCCAAGCGCCGCCAA
ACCACCGGCGAAATTCCTCAGAAAAAGGCCTACGAGAAAGGCCCGCCCTA
TGATGAAAATTTGTACCAACGATGCGATGAGCTGTCCAAGGATATCTATG
CCTATACAATCAAGGATAAGAAGACCGTCGAAGACGAGAAGGCGGGCAAG
AGTCAATCGAAGCACATACCCCAAATGTTTAGGGATTGGGACGAGGACAA
GGAAGATGAGGACCAGGACGAGCACGTTGAGGAATTGCGTCGCATCATGA
CGGTGCGCTGGCCTGTTTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|670603

>mRNA_4885-protein ID=mRNA_4885-protein|Name=jgi.p|Nanoce1779_2|670603|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MFASRRALFGSAAAPVHSRAFSSFPPPGGRNPWLTDKSMYPLVGITAATV
LLGAWYGPHYLYTSPEKQAPKRRQTTGEIPQKKAYEKGPPYDENLYQRCD
ELSKDIYAYTIKDKKTVEDEKAGKSQSKHIPQMFRDWDEDKEDEDQDEHV
EELRRIMTVRWPV*
back to top

mRNA from alignment at scaffold_9:888542..889789+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4885 ID=mRNA_4885|Name=jgi.p|Nanoce1779_2|670603|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_9:888542..889789+ (Nannochloropsis oceanica)
AGCCACGCACCATCATCGTAGGTACAGCATGTTCGCCTCACGTCGTGCCC
TCTTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCTTCCTTT
CCCCCGCCTGGCGGCAGGAATCCTTGGCTGACCGATAAGAGTGTGAGTTA
TTTCGTGGAGGTCAATGGGCGGGTGTGCTCGTGTATCAGAATCCCTCTGA
GCGCGATATATTATCTCACCTGGCTTATTTACGCCCCATCCCTCCCCCCT
AAATACAGATGTACCCGCTCGTAGGCATTACAGCCGCAACAGTCCTTTTA
GGGGCTTGGTACGGGCCTCACTATTTGTACACCTCGCCCGAAAAACAGTA
AGTTATTGGTAGGAAGGGGAGTGGGGAAGAGCGAAGACAGAAGATGGTGA
TCTGATTTTTTTCCTCGTATGATTTATGTGTATGCCTACGTGTCTTGTTG
CAGGCGAAAACAGAGATGTCATGCTCCAATAGTCGTCACATTTTTATCCA
AACCTGAAATCTATTTCCTCACCACGTCTGCTTACCTGAAACAGAGCCCC
CAAGCGCCGCCAAACCACCGGCGAAATTCCTCAGAAAAAGGCCTACGAGA
AAGGCCCGCCCTATGATGAAAATTTGTACCAACGATGCGATGAGCTGTCC
AAGGATATCTATGCCTATACAATCAAGGATAAGAAGACCGTCGAAGACGA
GAAGGCGGGCAAGGTTTAGATGGGTCTGACGTACGAAGAGTTCACCAAAG
AAGAGGGGAAATTTTAATATGGGGCAATATAAAGTTTTCTTTTAGAAAGA
CGGGAAAATGGAGGAATTGTGCAGTTTAAAGACTTTCTGCGGAAGAAATG
TCCGGCTAATAAGATTTGGAAAAAAAAAATGGGAGCTAGTAAAGGAAAAA
CGGAAGGAGGTATTATACAATAGTTCTCCTTTTCCTTTCACTTGTTTACT
TTTTCATCATCTCATAAACTTGCCCTATCATGCCTATTAAGAGTCAATCG
AAGCACATACCCCAAATGTAAGCATTCAAAAAGTGATAGATGAAGCGTTC
ACATCAGTGCTCCCACGCCGTCTTAACGGACTATACGTGGGAATTATCGA
TTTTTTTCTTTTTCACTTTTTCCCACTTTCATCTCCAACGACAACGGCTT
CAAGGTTTAGGGATTGGGACGAGGACAAGGAAGATGAGGACCAGGACGAG
CACGTTGAGGAATTGCGTCGCATCATGACGGTGCGCTGGCCTGTTTAG
back to top

Coding sequence (CDS) from alignment at scaffold_9:888542..889789+

>mRNA_4885 ID=mRNA_4885|Name=jgi.p|Nanoce1779_2|670603|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_9:888542..889789+ (Nannochloropsis oceanica)
ATGTTCGCCTCACGTCGTGCCCTCTTCGGGAGTGCTGCTGCACCTGTCCA
CAGTCGCGCTTTTTCTTCCTTTCCCCCGCCTGGCGGCAGGAATCCTTGGC
TGACCGATAAGAGTATGTACCCGCTCGTAGGCATTACAGCCGCAACAGTC
CTTTTAGGGGCTTGGTACGGGCCTCACTATTTGTACACCTCGCCCGAAAA
ACAAGCCCCCAAGCGCCGCCAAACCACCGGCGAAATTCCTCAGAAAAAGG
CCTACGAGAAAGGCCCGCCCTATGATGAAAATTTGTACCAACGATGCGAT
GAGCTGTCCAAGGATATCTATGCCTATACAATCAAGGATAAGAAGACCGT
CGAAGACGAGAAGGCGGGCAAGAGTCAATCGAAGCACATACCCCAAATGT
TTAGGGATTGGGACGAGGACAAGGAAGATGAGGACCAGGACGAGCACGTT
GAGGAATTGCGTCGCATCATGACGGTGCGCTGGCCTGTTTAGATGTTCGC
CTCACGTCGTGCCCTCTTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCG
CTTTTTCTTCCTTTCCCCCGCCTGGCGGCAGGAATCCTTGGCTGACCGAT
AAGAGTATGTACCCGCTCGTAGGCATTACAGCCGCAACAGTCCTTTTAGG
GGCTTGGTACGGGCCTCACTATTTGTACACCTCGCCCGAAAAACAAGCCC
CCAAGCGCCGCCAAACCACCGGCGAAATTCCTCAGAAAAAGGCCTACGAG
AAAGGCCCGCCCTATGATGAAAATTTGTACCAACGATGCGATGAGCTGTC
CAAGGATATCTATGCCTATACAATCAAGGATAAGAAGACCGTCGAAGACG
AGAAGGCGGGCAAGAGTCAATCGAAGCACATACCCCAAATGTTTAGGGAT
TGGGACGAGGACAAGGAAGATGAGGACCAGGACGAGCACGTTGAGGAATT
GCGTCGCATCATGACGGTGCGCTGGCCTGTTTAGATGTTCGCCTCACGTC
GTGCCCTCTTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCT
TCCTTTCCCCCGCCTGGCGGCAGGAATCCTTGGCTGACCGATAAGAGTAT
GTACCCGCTCGTAGGCATTACAGCCGCAACAGTCCTTTTAGGGGCTTGGT
ACGGGCCTCACTATTTGTACACCTCGCCCGAAAAACAAGCCCCCAAGCGC
CGCCAAACCACCGGCGAAATTCCTCAGAAAAAGGCCTACGAGAAAGGCCC
GCCCTATGATGAAAATTTGTACCAACGATGCGATGAGCTGTCCAAGGATA
TCTATGCCTATACAATCAAGGATAAGAAGACCGTCGAAGACGAGAAGGCG
GGCAAGAGTCAATCGAAGCACATACCCCAAATGTTTAGGGATTGGGACGA
GGACAAGGAAGATGAGGACCAGGACGAGCACGTTGAGGAATTGCGTCGCA
TCATGACGGTGCGCTGGCCTGTTTAGATGTTCGCCTCACGTCGTGCCCTC
TTCGGGAGTGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCTTCCTTTCC
CCCGCCTGGCGGCAGGAATCCTTGGCTGACCGATAAGAGTATGTACCCGC
TCGTAGGCATTACAGCCGCAACAGTCCTTTTAGGGGCTTGGTACGGGCCT
CACTATTTGTACACCTCGCCCGAAAAACAAGCCCCCAAGCGCCGCCAAAC
CACCGGCGAAATTCCTCAGAAAAAGGCCTACGAGAAAGGCCCGCCCTATG
ATGAAAATTTGTACCAACGATGCGATGAGCTGTCCAAGGATATCTATGCC
TATACAATCAAGGATAAGAAGACCGTCGAAGACGAGAAGGCGGGCAAGAG
TCAATCGAAGCACATACCCCAAATGTTTAGGGATTGGGACGAGGACAAGG
AAGATGAGGACCAGGACGAGCACGTTGAGGAATTGCGTCGCATCATGACG
GTGCGCTGGCCTGTTTAGATGTTCGCCTCACGTCGTGCCCTCTTCGGGAG
TGCTGCTGCACCTGTCCACAGTCGCGCTTTTTCTTCCTTTCCCCCGCCTG
GCGGCAGGAATCCTTGGCTGACCGATAAGAGTATGTACCCGCTCGTAGGC
ATTACAGCCGCAACAGTCCTTTTAGGGGCTTGGTACGGGCCTCACTATTT
GTACACCTCGCCCGAAAAACAAGCCCCCAAGCGCCGCCAAACCACCGGCG
AAATTCCTCAGAAAAAGGCCTACGAGAAAGGCCCGCCCTATGATGAAAAT
TTGTACCAACGATGCGATGAGCTGTCCAAGGATATCTATGCCTATACAAT
CAAGGATAAGAAGACCGTCGAAGACGAGAAGGCGGGCAAGAGTCAATCGA
AGCACATACCCCAAATGTTTAGGGATTGGGACGAGGACAAGGAAGATGAG
GACCAGGACGAGCACGTTGAGGAATTGCGTCGCATCATGACGGTGCGCTG
GCCTGTTTAG
back to top
Synonyms
Publications