jgi.p|Nanoce1779_2|9462, mRNA_1512 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|9462
Unique Name	mRNA_1512
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	878
Alignment location	scaffold_1:817137..818014 -

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Properties


Property Name	Value
TranscriptId	9548
Track	FilteredModels2
ProteinId	9462

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:817137..818014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|9462	gene_1512	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|9462	mRNA_1512-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1512	CDS_1512	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:817137..818014-
coding sequence from alignment at scaffold_1:817137..818014-

mRNA sequence

>mRNA_1512 ID=mRNA_1512|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=mRNA|length=878bp
TTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCTTTTA
TCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTTGCAG
ACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTCGAAA
GACTTAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTAACTT
TTTACTGAATGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCTTCCT
CGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACACAAC
ACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCGGCGT
GCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTGCCGC
CAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACGTGCT
CCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTCCTCA
TCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGTCGTC
GTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAAGCCA
GTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTTCTTC
GACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACATCCA
GCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAACCGG
ACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGAGGGG
TGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAGCTGT
GACGGACTCATTTGCTTGTTGTTACCTA

protein sequence of jgi.p|Nanoce1779_2|9462

>mRNA_1512-protein ID=mRNA_1512-protein|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MTQHSVINAMMPFGAGMARRALVSTSRLVAGVACRAARQHVTPSFPCAAA
LTCSGQHQSSAMSSSSSSSSSSSGKFPHSSSSSPSSSSSTPASPPSGRAC
DEASSGSITLESNNTTGPFFDLRVFNVDEAMEKLHIQQQAAPLGFVWSRE
EKPDPMIDGARIGK*

mRNA from alignment at scaffold_1:817137..818014-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1512 ID=mRNA_1512|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at scaffold_1:817137..818014- (Nannochloropsis oceanica)
TTGGCGTCGGTGTTGTCTTGCGTGTCCACGCGTTGTTGCCCACCCTTTTA
TCCAGCCATGCACGGCCTCACCTGGATTACGAAGCCGTAGCTCTTTGCAG
ACCATCAGAGAGACATGACGCGACAGCGGGACTCGCCCAGGCCTTCGAAA
GACTTAATAACGTCCTATCTCGTTTGTCCGCCGAGTCTGCCGTGTAACTT
TTTACTGAATGATGATTGAGATCATCGCTCCCGTGATGCGGGTGCTTCCT
CGTTATTGCTTGACAAGTCACGCACCACATTCCCGCACTCATGACACAAC
ACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCATGGCCCGGCGT
GCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGTGCCGTGCCGC
CAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCTTTAACGTGCT
CCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATCCTCGTCCTCA
TCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCCCGTCGTCGTC
GTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGCGATGAAGCCA
GTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGGGCCCTTCTTC
GACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGCTTCACATCCA
GCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAAGAGAAACCGG
ACCCTATGATCGATGGTGCACGTATTGGTAAGTGAAAAGGCTTGGAGGGG
TGGCACTGAGGAGATGGGAGAAGGCAGGGCTAAATTATGCCCAGAGCTGT
GACGGACTCATTTGCTTGTTGTTACCTA

Coding sequence (CDS) from alignment at scaffold_1:817137..818014-

>mRNA_1512 ID=mRNA_1512|Name=jgi.p|Nanoce1779_2|9462|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_1:817137..818014- (Nannochloropsis oceanica)
ATGACACAACACAGTGTTATAAACGCAATGATGCCCTTCGGTGCTGGCAT
GGCCCGGCGTGCCTTGGTTTCCACGTCGCGGCTAGTGGCGGGTGTGGCGT
GCCGTGCCGCCAGGCAACATGTGACGCCCTCGTTCCCTTGTGCCGCTGCT
TTAACGTGCTCCGGCCAACATCAGTCGTCCGCCATGTCCTCGTCCTCATC
CTCGTCCTCATCATCTTCGGGCAAATTCCCACACTCCTCCTCTTCCTCCC
CGTCGTCGTCGTCCTCCACGCCCGCCTCCCCTCCCTCAGGTAGGGCGTGC
GATGAAGCCAGTAGCGGGAGCATCACCCTGGAATCTAATAATACGACGGG
GCCCTTCTTCGACCTCCGCGTCTTCAACGTTGACGAGGCCATGGAGAAGC
TTCACATCCAGCAGCAAGCCGCGCCGTTGGGCTTCGTGTGGTCGCGAGAA
GAGAAACCGGACCCTATGATCGATGGTGCACGTATTGGTAAGTGA

Synonyms

Publications