jgi.p|Nanoce1779_2|12885, mRNA_1643 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|12885
Unique NamemRNA_1643
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length730
Alignment locationscaffold_1:1141490..1142219 -

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Properties
Property NameValue
TranscriptId12971
TrackFilteredModels2
ProteinId12885
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1141490..1142219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|12885gene_1643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|12885mRNA_1643-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1643CDS_1643Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1643 ID=mRNA_1643|Name=jgi.p|Nanoce1779_2|12885|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
TATCACCTCAATTATCTTAGCAGATGAGTCATGGCAGGGGATCATAATTC
CAGCTAACTGGTGGCACTACCGGCGGTCCACCGCACGGCGCTAAAAAGTC
GTCGGGGGAAAGCCGCGAACGCATGATGCCTGCAACCCTCACAACACTGC
CGCTATTGCAGGCACAAGGAACAGGAGAAAAGCAAGCCCATGCAAATGAA
GCGAAGGCAGCAACCCGTCGTGCCCGGCTTCGCGCAACCAGATTGGCCGA
AATCAAGGGTTTGCTTAGTAATTTCAGTAAGCGCATGCGCCGTGAACGTG
ACATGGACGCCTTGCAGGCGGCCGTCCGCAGGCGGGACGTGGAGACGGTT
GAGATGTGGTTCGATAATGATTATGAGGTAACGAAGCATGGGTTGATTGT
GGGGGTGCTAACGGGGGATTTGAGGATGGTCAAATTAATGGTAGATAAGG
GGGGAGGAACGCAGTATGCGCTGGCGAGGCTGCCGAGGGATATGGGTGAG
GATTTACCGAGGCGGGTTAGTGAGCAGCATAGAGGGTCGGGGTTGATGCA
TTCGGCGGTATTGCAGAAGTCGCCGGAAATGATCAATTTGCTGCATTCAT
ACATGAAGGCGGAGTGTAGTAGGCAGTTTGGATAGAGGCATGTATGGCAT
GCGGGGGCGATTAAGGACCATAAAGGGTTCACGCCATTGCACTTGGCTAT
GTCGTTAAGTAAATTACAGTGTACCGAGAG
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protein sequence of jgi.p|Nanoce1779_2|12885

>mRNA_1643-protein ID=mRNA_1643-protein|Name=jgi.p|Nanoce1779_2|12885|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MMPATLTTLPLLQAQGTGEKQAHANEAKAATRRARLRATRLAEIKGLLSN
FSKRMRRERDMDALQAAVRRRDVETVEMWFDNDYEVTKHGLIVGVLTGDL
RMVKLMVDKGGGTQYALARLPRDMGEDLPRRVSEQHRGSGLMHSAVLQKS
PEMINLLHSYMKAECSRQFG*
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mRNA from alignment at scaffold_1:1141490..1142219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1643 ID=mRNA_1643|Name=jgi.p|Nanoce1779_2|12885|organism=Nannochloropsis oceanica|type=mRNA|length=730bp|location=Sequence derived from alignment at scaffold_1:1141490..1142219- (Nannochloropsis oceanica)
TATCACCTCAATTATCTTAGCAGATGAGTCATGGCAGGGGATCATAATTC
CAGCTAACTGGTGGCACTACCGGCGGTCCACCGCACGGCGCTAAAAAGTC
GTCGGGGGAAAGCCGCGAACGCATGATGCCTGCAACCCTCACAACACTGC
CGCTATTGCAGGCACAAGGAACAGGAGAAAAGCAAGCCCATGCAAATGAA
GCGAAGGCAGCAACCCGTCGTGCCCGGCTTCGCGCAACCAGATTGGCCGA
AATCAAGGGTTTGCTTAGTAATTTCAGTAAGCGCATGCGCCGTGAACGTG
ACATGGACGCCTTGCAGGCGGCCGTCCGCAGGCGGGACGTGGAGACGGTT
GAGATGTGGTTCGATAATGATTATGAGGTAACGAAGCATGGGTTGATTGT
GGGGGTGCTAACGGGGGATTTGAGGATGGTCAAATTAATGGTAGATAAGG
GGGGAGGAACGCAGTATGCGCTGGCGAGGCTGCCGAGGGATATGGGTGAG
GATTTACCGAGGCGGGTTAGTGAGCAGCATAGAGGGTCGGGGTTGATGCA
TTCGGCGGTATTGCAGAAGTCGCCGGAAATGATCAATTTGCTGCATTCAT
ACATGAAGGCGGAGTGTAGTAGGCAGTTTGGATAGAGGCATGTATGGCAT
GCGGGGGCGATTAAGGACCATAAAGGGTTCACGCCATTGCACTTGGCTAT
GTCGTTAAGTAAATTACAGTGTACCGAGAG
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Coding sequence (CDS) from alignment at scaffold_1:1141490..1142219-

>mRNA_1643 ID=mRNA_1643|Name=jgi.p|Nanoce1779_2|12885|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_1:1141490..1142219- (Nannochloropsis oceanica)
ATGATGCCTGCAACCCTCACAACACTGCCGCTATTGCAGGCACAAGGAAC
AGGAGAAAAGCAAGCCCATGCAAATGAAGCGAAGGCAGCAACCCGTCGTG
CCCGGCTTCGCGCAACCAGATTGGCCGAAATCAAGGGTTTGCTTAGTAAT
TTCAGTAAGCGCATGCGCCGTGAACGTGACATGGACGCCTTGCAGGCGGC
CGTCCGCAGGCGGGACGTGGAGACGGTTGAGATGTGGTTCGATAATGATT
ATGAGGTAACGAAGCATGGGTTGATTGTGGGGGTGCTAACGGGGGATTTG
AGGATGGTCAAATTAATGGTAGATAAGGGGGGAGGAACGCAGTATGCGCT
GGCGAGGCTGCCGAGGGATATGGGTGAGGATTTACCGAGGCGGGTTAGTG
AGCAGCATAGAGGGTCGGGGTTGATGCATTCGGCGGTATTGCAGAAGTCG
CCGGAAATGATCAATTTGCTGCATTCATACATGAAGGCGGAGTGTAGTAG
GCAGTTTGGATAG
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Synonyms
Publications