jgi.p|Nanoce1779_2|571524, mRNA_1260 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571524
Unique NamemRNA_1260
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2220
Alignment locationscaffold_1:126942..129387 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571610
TrackFilteredModels2
ProteinId571524
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:126942..129387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571524gene_1260Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571524mRNA_1260-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1260CDS_1260Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1260 ID=mRNA_1260|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
GTGGACGGGCACGACGAGCTGCTCTGTCGGTGACCGCCGCGCCATCCTCC
CGATCAGTATGGCGGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGCCGTT
GCTGCTGCTGTTGCTGCCGCTGCTGTTGCTGCTGTTGCTGCTTTTCCTGT
CCCTACTAGCACGATCACTGCCACAGCTCTCGGAAGAGCGGCGCTTTCCC
AGCCGTGCACCGCCCGCTACGAGAGAGCCTTGGAACATGCTTCCTCCTGT
TGCCGCAGAGGCGTTGCTGTAAGTGCTTTGCTGACCACTATCGCTACTAT
TGTTGCCGTTGTTGCTGTTGCTGCTATTTGAAGCAGCTGACATGGTGGAA
AAGACTAGAGGCTCTCTCGCTTCGCCGCTCGAAGAAGAGGAGGAGGAATT
GGAGGAGGAGGGGGTGGAGGGGGAGGAGGAAGGGGAGGAGTATGACAACG
CGCGTTGCTGCTGTCCTCGCTGTTCTTGATTATGGTGCTGCTGCTGTTGG
TGCGAGAGTGAATGCAGGTTCTTTATCGCCGGACTGTTATTAATGCTGGA
GGGGGCGGAGGAAAAAGAGGAAGACGAGGAGGACGAAGAGGTAGACGTAG
TTTTCTTCAGCCTCACGTCGCCTGCTGCTGTTAGTGGAGCGGCCTCTTCT
CCCGTGGCACCTAGCCGACAGTCACCCTGCATGGCTGGCTGCTGCAAGGT
TGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTG
GCGCAGGCGCTGGCGCTATTCCTACTCCTGCTGCTCGTGCTCGTGCCCCA
TCTCGTGCTGTTGACGAGGGGGAGAAGGAGAAAGACCTCGACCGCTGCGA
GGCCTGCATTGGCCGCAATAACGACGCAAGGCCGAAAGAAGACGACGAAT
CACCAGCCGAAACGGCACCAGCAGCACGGGGGGCGGTCAAGCCGTACGAA
TCAAGTGGCAGAAGATTCATAGCTAAGCATGCATACTGCCCTTGGTTCAG
CACCACGTGTCTCACCCGCAACAGCTTGGCGACGATTCCACCATCCCTTC
CTACCGTGTCCGTCACCATGGACATGGTCGTCGTCCCCTTCGTTTCCGTC
AGCATATACTGTACCAACAACTGATAGAACTTCACCCTGCTGGCGGGGGC
CACGATCAGCCCAAACAAATAGGAGGGCAAAACTGCCGTCGCCGCAAACC
GGGCATTGGCCTCCTCCGTATCAAAATACTCCGAGGCAAAGTTATCGTCC
GCCCACAGCCGAAACACACCATTGGCATAGACAAAACCGCACACCGCCGC
AATGCCTCCTTCCTGCAACCCTGCCACGTACGCGGGCATGAATGCAGGGT
CTAGCAACTCGTCCATAGGGCGACAAGCGAGGGAAGGGTCCTCCTGCACC
TTCACTTGAGGCGCAAGCACCACCCCTTCAGGACCAGGAAAGGCAAGGAC
ACGAAGGAGGCTGCTGGTGGCGCCGCAGGTGATGTCAACCTTGTGTCGGT
AGCAGTACATGTCCCAAGTGCGGCTGGGGTGTAGGGGGAGACAGAGATGG
AGGGGGGAGGGGTTGGAAAGGGTAGCAGGAAGTGTGAGTAAAAGAGCGTG
TGGAAAAGAACGGGGCTCCTGTCAACTGCAGAGGCGTTGTCGACATTGTG
CCGGTAGCTGTTTAACCTCGCATATGGGACTGGATGACGGTGTGATAATT
GCTAAGGCCTTAAACTGTTGCAGTTCTCCGGTCGCCTTTAAACGCGAGGC
TATCTGCCCAAATATCCGCGCCGCTGTCTCGCAGTGTTCATACTGTTGCA
GTCCAGGCGGGGCGGCAAGCTCACCCAGCATGGCCCATCCAGGAGGACCA
ACCTCGCCTGATGCGGAGGCAGGCGTGGGGGTCACAGACATGCTGCTTCC
CGCGGCGCAGGATGGGGCAGGACTGAGGGTAGAGGAGGAGGCAGCGGAGG
AGGAGGGAGAGGAAGAAGAGGAGGAGGACGTGGGATCCCCTCGGTTGCTT
GAATTGCTACTTTCCATTGCACCGGCGCCTGGCTTGGGAGGAACCACACG
GTAGATTGTGGAAAAGGCGGACGAGGGTGCACAGGTGGCCATGCCTACGG
CGAGGCCTGATTTATCAGATGACGAGTTCACGTCGGCTGCTGCAGAGCCT
GCCCCAGCAGCACCTAATGGAGGCGCTGCAAGGCCTTTTCCCATGTGCAT
CATGGGGCCTGGCCTGTCCT
back to top

protein sequence of jgi.p|Nanoce1779_2|571524

>mRNA_1260-protein ID=mRNA_1260-protein|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MLEGAEEKEEDEEDEEVDVVFFSLTSPAAVSGAASSPVAPSRQSPCMAGC
CKVVVVVVVVAVAAAAAAAGAGAGAIPTPAARARAPSRAVDEGEKEKDLD
RCEACIGRNNDARPKEDDESPAETAPAARGAVKPYESSGRRFIAKHAYCP
WFSTTCLTRNSLATIPPSLPTVSVTMDMVVVPFVSVSIYCTNN*
back to top

mRNA from alignment at scaffold_1:126942..129387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1260 ID=mRNA_1260|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at scaffold_1:126942..129387- (Nannochloropsis oceanica)
GTGGACGGGCACGACGAGCTGCTCTGTCGGTGACCGCCGCGCCATCCTCC
CGATCAGTATGGCGGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGCCGTT
GCTGCTGCTGTTGCTGCCGCTGCTGTTGCTGCTGTTGCTGCTTTTCCTGT
CCCTACTAGCACGATCACTGCCACAGCTCTCGGAAGAGCGGCGCTTTCCC
AGCCGTGCACCGCCCGCTACGAGAGAGCCTTGGAACATGCTTCCTCCTGT
TGCCGCAGAGGCGTTGCTGTAAGTGCTTTGCTGACCACTATCGCTACTAT
TGTTGCCGTTGTTGCTGTTGCTGCTATTTGAAGCAGCTGACATGGTGGAA
AAGACTAGAGGCTCTCTCGCTTCGCCGCTCGAAGAAGAGGAGGAGGAATT
GGAGGAGGAGGGGGTGGAGGGGGAGGAGGAAGGGGAGGAGTATGACAACG
CGCGTTGCTGCTGTCCTCGCTGTTCTTGATTATGGTGCTGCTGCTGTTGG
TGCGAGAGTGAATGCAGGTTCTTTATCGCCGGACTGTTATTAATGCTGGA
GGGGGCGGAGGAAAAAGAGGAAGACGAGGAGGACGAAGAGGTAGACGTAG
TTTTCTTCAGCCTCACGTCGCCTGCTGCTGTTAGTGGAGCGGCCTCTTCT
CCCGTGGCACCTAGCCGACAGTCACCCTGCATGGCTGGCTGCTGCAAGGT
TGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTG
GCGCAGGCGCTGGCGCTATTCCTACTCCTGCTGCTCGTGCTCGTGCCCCA
TCTCGTGCTGTTGACGAGGGGGAGAAGGAGAAAGACCTCGACCGCTGCGA
GGCCTGCATTGGCCGCAATAACGACGCAAGGCCGAAAGAAGACGACGAAT
CACCAGCCGAAACGGCACCAGCAGCACGGGGGGCGGTCAAGCCGTACGAA
TCAAGTGGCAGAAGATTCATAGCTAAGCATGCATACTGCCCTTGGTTCAG
CACCACGTGTCTCACCCGCAACAGCTTGGCGACGATTCCACCATCCCTTC
CTACCGTGTCCGTCACCATGGACATGGTCGTCGTCCCCTTCGTTTCCGTC
AGCATATACTGTACCAACAACTGATAGAACTTCACCCTGCTGGCGGGGGC
CACGATCAGCCCAAACAAATAGGAGGGCAAAACTGCCGTCGCCGCAAACC
GGGCATTGGCCTCCTCCGTATCAAAATACTCCGAGGCAAAGTTATCGTCC
GCCCACAGCCGAAACACACCATTGGCATAGACAAAACCGCACACCGCCGC
AATGCCTCCTTCCTGCAACCCTGCCACGTACGCGGGCATGAATGCAGGGT
CTAGCAACTCGTCCATAGGGCGACAAGCGAGGGAAGGGTCCTCCTGCACC
TTCACTTGAGGCGCAAGCACCACCCCTTCAGGACCAGGAAAGGCAAGGAC
ACGAAGGAGGCTGCTGGTGGCGCCGCAGGTGATGTCAACCTTGTGTCGGT
AGCAGTACATGTCCCAAGTGCGGCTGGGGTGTAGGGGGAGACAGAGATGG
AGGGGGGAGGGGTTGGAAAGGGTAGCAGGAAGTGTGAGTAAAAGAGCGTG
TGGAAAAGAACGGGGCTCCTGTCAACTGCAGAGGCGTTGTCGACATTGTG
CCGGTAGCTGTTTAACCTCGCATATGGGACTGGATGACGGTGTGCTAGGG
GTGGTAGGGAGGGGTGGCAGGGGAGAGACGGCTGAATTGTTTGTGTTGGG
ACGCGAAATGGAGGCTGATAGGAAAGAGATGGCTTTGTGACATACATGGG
GGGACTTACGAATGACAAGAAGGAAAAAGAGTGCATAGCCACAGTTGGCA
CGCCCACACAATCAACTTGAAACGTCCCACACATCCATGCCCACTAACGA
CCACCCCTCTCTCTACTTACATAATTGCTAAGGCCTTAAACTGTTGCAGT
TCTCCGGTCGCCTTTAAACGCGAGGCTATCTGCCCAAATATCCGCGCCGC
TGTCTCGCAGTGTTCATACTGTTGCAGTCCAGGCGGGGCGGCAAGCTCAC
CCAGCATGGCCCATCCAGGAGGACCAACCTCGCCTGATGCGGAGGCAGGC
GTGGGGGTCACAGACATGCTGCTTCCCGCGGCGCAGGATGGGGCAGGACT
GAGGGTAGAGGAGGAGGCAGCGGAGGAGGAGGGAGAGGAAGAAGAGGAGG
AGGACGTGGGATCCCCTCGGTTGCTTGAATTGCTACTTTCCATTGCACCG
GCGCCTGGCTTGGGAGGAACCACACGGTAGATTGTGGAAAAGGCGGACGA
GGGTGCACAGGTGGCCATGCCTACGGCGAGGCCTGATTTATCAGATGACG
AGTTCACGTCGGCTGCTGCAGAGCCTGCCCCAGCAGCACCTAATGGAGGC
GCTGCAAGGCCTTTTCCCATGTGCATCATGGGGCCTGGCCTGTCCT
back to top

Coding sequence (CDS) from alignment at scaffold_1:126942..129387-

>mRNA_1260 ID=mRNA_1260|Name=jgi.p|Nanoce1779_2|571524|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_1:126942..129387- (Nannochloropsis oceanica)
ATGCTGGAGGGGGCGGAGGAAAAAGAGGAAGACGAGGAGGACGAAGAGGT
AGACGTAGTTTTCTTCAGCCTCACGTCGCCTGCTGCTGTTAGTGGAGCGG
CCTCTTCTCCCGTGGCACCTAGCCGACAGTCACCCTGCATGGCTGGCTGC
TGCAAGGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGCTGCTGCTGC
TGCTGCTGGCGCAGGCGCTGGCGCTATTCCTACTCCTGCTGCTCGTGCTC
GTGCCCCATCTCGTGCTGTTGACGAGGGGGAGAAGGAGAAAGACCTCGAC
CGCTGCGAGGCCTGCATTGGCCGCAATAACGACGCAAGGCCGAAAGAAGA
CGACGAATCACCAGCCGAAACGGCACCAGCAGCACGGGGGGCGGTCAAGC
CGTACGAATCAAGTGGCAGAAGATTCATAGCTAAGCATGCATACTGCCCT
TGGTTCAGCACCACGTGTCTCACCCGCAACAGCTTGGCGACGATTCCACC
ATCCCTTCCTACCGTGTCCGTCACCATGGACATGGTCGTCGTCCCCTTCG
TTTCCGTCAGCATATACTGTACCAACAACTGA
back to top
Synonyms
Publications