jgi.p|Nanoce1779_2|572660, mRNA_1549 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572660
Unique Name	mRNA_1549
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2550
Alignment location	scaffold_1:930158..932707 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572746
Track	FilteredModels2
ProteinId	572660

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:930158..932707 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572660	gene_1549	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572660	mRNA_1549-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1549	CDS_1549	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:930158..932707-
coding sequence from alignment at scaffold_1:930158..932707-

mRNA sequence

>mRNA_1549 ID=mRNA_1549|Name=jgi.p|Nanoce1779_2|572660|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp
ATTCTCTTTATTGGCTCCACACGACAACCCGCGTCCCCGCCCCACTTCGC
ATGGCCAACACCTCCAGTGCCAACAGCAGCAGCAGAAGCAGCGGCAGCCA
CATTGCCAAGCTCCTGCCCCAGTCCCCACAAGATTCACCGGTGCGCGTCT
ACAGTAAGAAGGCTGACCAACAAGGTGCCAACAGCAGCAATAATGGGGCC
ACAGCGGCAGGCGTTGCGCTGGGCGGCTCTTCTGCTTCGTCTTGGGATGT
GGAACAAGCCGATCAAAGCCCTACGCACAGCCCTTCCAAGCAACTCTTGT
CGGCCAGTCTTGCCCCGGCGATGATACAGAAGCTAATTTATGGCCTGGGT
GCCTCCTTTGGATTTAACGCGCTGGTTGTGAGCAATGGAACTTTGATGGA
CTACTACGAAAAGACATATGGGTTGTCCACTTCCTTCCTCAGCTTGGCTG
ATTTCCTGGCAGGATCCTTGACGCTGTACGCCGTCGTAGGTTTTGGGTAC
TGGAGTGATATAACCACGAGCTCGTACGGGCGGCGGAAGCCATTTGTGGT
GTTTTTCACCCCGCTCTTGGCCTTTTCGCTTATCATGCTTTTTACTCCCA
AATGGGCGCCTACGTACAGTAGCACGGGCACGGAGACAGCGGCCTGGTTT
GGAGTGTTTTACACATTAGAGCAAGTATCGGTTTCGTCGATGACGGTTGT
GATTGCGGCATGGGGGACATCTTTGACGCATGCGGTGAACGAACGAGCGT
CTCTATATACCATCGACGCAATCATGGATTTGTTTGGGTTTTGTGCCGGT
GTTTTGATCACTGCCGTCGGCACGCCTGCCAAAACCGGGGTGGCGTTGGC
ATTCATCTTCCTCTTCCAGAATTTATTGCTCGTGTCTTTTCTTCGCGATG
AGCAGGTGACGACGGGTGCCACAGCTGGAGGAGCGGCGAGGAGGCACCAT
GTGGCGGAGACTGCGATACAAGTCCCGTTTATTGCGGGCTTGCACATGTC
TTTTGAGAATAAGGAGTTTCTGACTTTGTTCAAGGCTGCATTGTTTGGCA
GTATTGTGGGCACCACGGTCAACCTCCTCCCAATCTTCTTCCAAGTCGTC
ATGAGGATAGGCGATGACGCCATCGAAAGCGTCTATAGCATCTATGCCCA
ACTTGTCATCATTTCCGCTTTTTTTGCCGTTTTGTCGACGGCCACTTTAA
ATGCACGATGGGGGAAAATTCGGACGCTTCAGTTTGGGGTGGGCTGCGGA
GCTGTGTATGGGTTGATTGCGTTTTGCGCCTCTTACGCGAGCGTGGTGGA
GTTGTTCTACCTGAGCAGTGTCCCGGCTGGGATGTTCGCGGGCATTGTGG
CAGTGAACGGCAATGTGCTGTTGAGTAACTCGATCGATTACGATCAGCTT
AAGACAGGGTTTAGGCGGCAGTCGCTTTACCAATGCCTCATTTATGTGCC
CATGACTTTTGTCAGTGTCGCGGGCTCCTCCATTCCTCTGTCGATCATCA
CGGCGTTCGGTGGGCTGGAAGCAGGACAGACCCCCCCCTCCGCAGTCGTT
CTGACTCTTCGGCTCTGGGTTTCATTGGTAGTGACTGGATGTTTGCTTGC
CTCGTATCGTCAGCTGTCCGCCTTTAAGTTGACCGAGGCAGTACAACAGG
ATGTCTCTGCCCAGCTCCGTCGGCGTGAGCAAGGACAGTTTTTGCCGCCC
CGAGATCCGATCCAGGAAGAAGAGGACGAATCGGGAGAGAATACATTGGG
GGTAGAAGGCGAAATTGAGCTCTCACAGGATGTCAAGGCAGGGGAAAACA
GCAGCAGTGGTGGGGTTAACGGTATCAGCAGCAGTGGTGAAGGTAAGGTG
CGTGTGGACGTCGAGGTTGAGAATGACCCGCCGAGTGCGTCGGTCAATGG
GCCTTGGTACCCTATGGTGGCCTTCCTAGAGCTCAACTTTTCCTCTCAAG
AGCTGGCGTTACTGACGCTGGATAATGGAAAGCAGTGGAAGTTGGGCACA
TACCTGTTGAATCTGTTGGCTTGTGCTTTCTATGCCGTCATTCTGTTTGT
GCAGACGGTGGTAGCGGTCGACCAACGGGACGACTTGACGGGCGCCATGA
TCTTTGTCTGCTTTTTAATGCTGGCTTCCAGTGTTGCCATTTATGAGGGA
GGGAGGTTTCATGCAATGAAGGAAGTTTACTACATGGGTGATGGACGGGA
CGTGGCGCGGTGGGCAAGGCAGCGTTTGACTGCGCGAAAAAACGTGCGAC
CTTGGGTGTTGTACAATCCATTTCGACTCGTACTGCGGACGGTCATCGCC
CACGTGGGTTTCAGCATTGTCCTGCTTTCTGTGGTTTTCTCATTGCATTT
GCCGCTTAAAGGAGGAATAGAGAATTAGGCGCATTAAAAATGGGGGGGGG
TAAGGGGGGTACATGTTCATGTGTACGATGACTGTCGAGAAAAGTTGAAA
TTGAAATAGAATAACAAATAAACGGGCGGTGCCCTTCCATGTATGATGAT
GAAAGCTAATTGATAAAAGCAATTATAAAGAATGATTTCGCCAAGGTATA

protein sequence of jgi.p|Nanoce1779_2|572660

>mRNA_1549-protein ID=mRNA_1549-protein|Name=jgi.p|Nanoce1779_2|572660|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MANTSSANSSSRSSGSHIAKLLPQSPQDSPVRVYSKKADQQGANSSNNGA
TAAGVALGGSSASSWDVEQADQSPTHSPSKQLLSASLAPAMIQKLIYGLG
ASFGFNALVVSNGTLMDYYEKTYGLSTSFLSLADFLAGSLTLYAVVGFGY
WSDITTSSYGRRKPFVVFFTPLLAFSLIMLFTPKWAPTYSSTGTETAAWF
GVFYTLEQVSVSSMTVVIAAWGTSLTHAVNERASLYTIDAIMDLFGFCAG
VLITAVGTPAKTGVALAFIFLFQNLLLVSFLRDEQVTTGATAGGAARRHH
VAETAIQVPFIAGLHMSFENKEFLTLFKAALFGSIVGTTVNLLPIFFQVV
MRIGDDAIESVYSIYAQLVIISAFFAVLSTATLNARWGKIRTLQFGVGCG
AVYGLIAFCASYASVVELFYLSSVPAGMFAGIVAVNGNVLLSNSIDYDQL
KTGFRRQSLYQCLIYVPMTFVSVAGSSIPLSIITAFGGLEAGQTPPSAVV
LTLRLWVSLVVTGCLLASYRQLSAFKLTEAVQQDVSAQLRRREQGQFLPP
RDPIQEEEDESGENTLGVEGEIELSQDVKAGENSSSGGVNGISSSGEGKV
RVDVEVENDPPSASVNGPWYPMVAFLELNFSSQELALLTLDNGKQWKLGT
YLLNLLACAFYAVILFVQTVVAVDQRDDLTGAMIFVCFLMLASSVAIYEG
GRFHAMKEVYYMGDGRDVARWARQRLTARKNVRPWVLYNPFRLVLRTVIA
HVGFSIVLLSVVFSLHLPLKGGIEN*

mRNA from alignment at scaffold_1:930158..932707-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1549 ID=mRNA_1549|Name=jgi.p|Nanoce1779_2|572660|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp|location=Sequence derived from alignment at scaffold_1:930158..932707- (Nannochloropsis oceanica)
ATTCTCTTTATTGGCTCCACACGACAACCCGCGTCCCCGCCCCACTTCGC
ATGGCCAACACCTCCAGTGCCAACAGCAGCAGCAGAAGCAGCGGCAGCCA
CATTGCCAAGCTCCTGCCCCAGTCCCCACAAGATTCACCGGTGCGCGTCT
ACAGTAAGAAGGCTGACCAACAAGGTGCCAACAGCAGCAATAATGGGGCC
ACAGCGGCAGGCGTTGCGCTGGGCGGCTCTTCTGCTTCGTCTTGGGATGT
GGAACAAGCCGATCAAAGCCCTACGCACAGCCCTTCCAAGCAACTCTTGT
CGGCCAGTCTTGCCCCGGCGATGATACAGAAGCTAATTTATGGCCTGGGT
GCCTCCTTTGGATTTAACGCGCTGGTTGTGAGCAATGGAACTTTGATGGA
CTACTACGAAAAGACATATGGGTTGTCCACTTCCTTCCTCAGCTTGGCTG
ATTTCCTGGCAGGATCCTTGACGCTGTACGCCGTCGTAGGTTTTGGGTAC
TGGAGTGATATAACCACGAGCTCGTACGGGCGGCGGAAGCCATTTGTGGT
GTTTTTCACCCCGCTCTTGGCCTTTTCGCTTATCATGCTTTTTACTCCCA
AATGGGCGCCTACGTACAGTAGCACGGGCACGGAGACAGCGGCCTGGTTT
GGAGTGTTTTACACATTAGAGCAAGTATCGGTTTCGTCGATGACGGTTGT
GATTGCGGCATGGGGGACATCTTTGACGCATGCGGTGAACGAACGAGCGT
CTCTATATACCATCGACGCAATCATGGATTTGTTTGGGTTTTGTGCCGGT
GTTTTGATCACTGCCGTCGGCACGCCTGCCAAAACCGGGGTGGCGTTGGC
ATTCATCTTCCTCTTCCAGAATTTATTGCTCGTGTCTTTTCTTCGCGATG
AGCAGGTGACGACGGGTGCCACAGCTGGAGGAGCGGCGAGGAGGCACCAT
GTGGCGGAGACTGCGATACAAGTCCCGTTTATTGCGGGCTTGCACATGTC
TTTTGAGAATAAGGAGTTTCTGACTTTGTTCAAGGCTGCATTGTTTGGCA
GTATTGTGGGCACCACGGTCAACCTCCTCCCAATCTTCTTCCAAGTCGTC
ATGAGGATAGGCGATGACGCCATCGAAAGCGTCTATAGCATCTATGCCCA
ACTTGTCATCATTTCCGCTTTTTTTGCCGTTTTGTCGACGGCCACTTTAA
ATGCACGATGGGGGAAAATTCGGACGCTTCAGTTTGGGGTGGGCTGCGGA
GCTGTGTATGGGTTGATTGCGTTTTGCGCCTCTTACGCGAGCGTGGTGGA
GTTGTTCTACCTGAGCAGTGTCCCGGCTGGGATGTTCGCGGGCATTGTGG
CAGTGAACGGCAATGTGCTGTTGAGTAACTCGATCGATTACGATCAGCTT
AAGACAGGGTTTAGGCGGCAGTCGCTTTACCAATGCCTCATTTATGTGCC
CATGACTTTTGTCAGTGTCGCGGGCTCCTCCATTCCTCTGTCGATCATCA
CGGCGTTCGGTGGGCTGGAAGCAGGACAGACCCCCCCCTCCGCAGTCGTT
CTGACTCTTCGGCTCTGGGTTTCATTGGTAGTGACTGGATGTTTGCTTGC
CTCGTATCGTCAGCTGTCCGCCTTTAAGTTGACCGAGGCAGTACAACAGG
ATGTCTCTGCCCAGCTCCGTCGGCGTGAGCAAGGACAGTTTTTGCCGCCC
CGAGATCCGATCCAGGAAGAAGAGGACGAATCGGGAGAGAATACATTGGG
GGTAGAAGGCGAAATTGAGCTCTCACAGGATGTCAAGGCAGGGGAAAACA
GCAGCAGTGGTGGGGTTAACGGTATCAGCAGCAGTGGTGAAGGTAAGGTG
CGTGTGGACGTCGAGGTTGAGAATGACCCGCCGAGTGCGTCGGTCAATGG
GCCTTGGTACCCTATGGTGGCCTTCCTAGAGCTCAACTTTTCCTCTCAAG
AGCTGGCGTTACTGACGCTGGATAATGGAAAGCAGTGGAAGTTGGGCACA
TACCTGTTGAATCTGTTGGCTTGTGCTTTCTATGCCGTCATTCTGTTTGT
GCAGACGGTGGTAGCGGTCGACCAACGGGACGACTTGACGGGCGCCATGA
TCTTTGTCTGCTTTTTAATGCTGGCTTCCAGTGTTGCCATTTATGAGGGA
GGGAGGTTTCATGCAATGAAGGAAGTTTACTACATGGGTGATGGACGGGA
CGTGGCGCGGTGGGCAAGGCAGCGTTTGACTGCGCGAAAAAACGTGCGAC
CTTGGGTGTTGTACAATCCATTTCGACTCGTACTGCGGACGGTCATCGCC
CACGTGGGTTTCAGCATTGTCCTGCTTTCTGTGGTTTTCTCATTGCATTT
GCCGCTTAAAGGAGGAATAGAGAATTAGGCGCATTAAAAATGGGGGGGGG
TAAGGGGGGTACATGTTCATGTGTACGATGACTGTCGAGAAAAGTTGAAA
TTGAAATAGAATAACAAATAAACGGGCGGTGCCCTTCCATGTATGATGAT
GAAAGCTAATTGATAAAAGCAATTATAAAGAATGATTTCGCCAAGGTATA

Coding sequence (CDS) from alignment at scaffold_1:930158..932707-

>mRNA_1549 ID=mRNA_1549|Name=jgi.p|Nanoce1779_2|572660|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_1:930158..932707- (Nannochloropsis oceanica)
ATGGCCAACACCTCCAGTGCCAACAGCAGCAGCAGAAGCAGCGGCAGCCA
CATTGCCAAGCTCCTGCCCCAGTCCCCACAAGATTCACCGGTGCGCGTCT
ACAGTAAGAAGGCTGACCAACAAGGTGCCAACAGCAGCAATAATGGGGCC
ACAGCGGCAGGCGTTGCGCTGGGCGGCTCTTCTGCTTCGTCTTGGGATGT
GGAACAAGCCGATCAAAGCCCTACGCACAGCCCTTCCAAGCAACTCTTGT
CGGCCAGTCTTGCCCCGGCGATGATACAGAAGCTAATTTATGGCCTGGGT
GCCTCCTTTGGATTTAACGCGCTGGTTGTGAGCAATGGAACTTTGATGGA
CTACTACGAAAAGACATATGGGTTGTCCACTTCCTTCCTCAGCTTGGCTG
ATTTCCTGGCAGGATCCTTGACGCTGTACGCCGTCGTAGGTTTTGGGTAC
TGGAGTGATATAACCACGAGCTCGTACGGGCGGCGGAAGCCATTTGTGGT
GTTTTTCACCCCGCTCTTGGCCTTTTCGCTTATCATGCTTTTTACTCCCA
AATGGGCGCCTACGTACAGTAGCACGGGCACGGAGACAGCGGCCTGGTTT
GGAGTGTTTTACACATTAGAGCAAGTATCGGTTTCGTCGATGACGGTTGT
GATTGCGGCATGGGGGACATCTTTGACGCATGCGGTGAACGAACGAGCGT
CTCTATATACCATCGACGCAATCATGGATTTGTTTGGGTTTTGTGCCGGT
GTTTTGATCACTGCCGTCGGCACGCCTGCCAAAACCGGGGTGGCGTTGGC
ATTCATCTTCCTCTTCCAGAATTTATTGCTCGTGTCTTTTCTTCGCGATG
AGCAGGTGACGACGGGTGCCACAGCTGGAGGAGCGGCGAGGAGGCACCAT
GTGGCGGAGACTGCGATACAAGTCCCGTTTATTGCGGGCTTGCACATGTC
TTTTGAGAATAAGGAGTTTCTGACTTTGTTCAAGGCTGCATTGTTTGGCA
GTATTGTGGGCACCACGGTCAACCTCCTCCCAATCTTCTTCCAAGTCGTC
ATGAGGATAGGCGATGACGCCATCGAAAGCGTCTATAGCATCTATGCCCA
ACTTGTCATCATTTCCGCTTTTTTTGCCGTTTTGTCGACGGCCACTTTAA
ATGCACGATGGGGGAAAATTCGGACGCTTCAGTTTGGGGTGGGCTGCGGA
GCTGTGTATGGGTTGATTGCGTTTTGCGCCTCTTACGCGAGCGTGGTGGA
GTTGTTCTACCTGAGCAGTGTCCCGGCTGGGATGTTCGCGGGCATTGTGG
CAGTGAACGGCAATGTGCTGTTGAGTAACTCGATCGATTACGATCAGCTT
AAGACAGGGTTTAGGCGGCAGTCGCTTTACCAATGCCTCATTTATGTGCC
CATGACTTTTGTCAGTGTCGCGGGCTCCTCCATTCCTCTGTCGATCATCA
CGGCGTTCGGTGGGCTGGAAGCAGGACAGACCCCCCCCTCCGCAGTCGTT
CTGACTCTTCGGCTCTGGGTTTCATTGGTAGTGACTGGATGTTTGCTTGC
CTCGTATCGTCAGCTGTCCGCCTTTAAGTTGACCGAGGCAGTACAACAGG
ATGTCTCTGCCCAGCTCCGTCGGCGTGAGCAAGGACAGTTTTTGCCGCCC
CGAGATCCGATCCAGGAAGAAGAGGACGAATCGGGAGAGAATACATTGGG
GGTAGAAGGCGAAATTGAGCTCTCACAGGATGTCAAGGCAGGGGAAAACA
GCAGCAGTGGTGGGGTTAACGGTATCAGCAGCAGTGGTGAAGGTAAGGTG
CGTGTGGACGTCGAGGTTGAGAATGACCCGCCGAGTGCGTCGGTCAATGG
GCCTTGGTACCCTATGGTGGCCTTCCTAGAGCTCAACTTTTCCTCTCAAG
AGCTGGCGTTACTGACGCTGGATAATGGAAAGCAGTGGAAGTTGGGCACA
TACCTGTTGAATCTGTTGGCTTGTGCTTTCTATGCCGTCATTCTGTTTGT
GCAGACGGTGGTAGCGGTCGACCAACGGGACGACTTGACGGGCGCCATGA
TCTTTGTCTGCTTTTTAATGCTGGCTTCCAGTGTTGCCATTTATGAGGGA
GGGAGGTTTCATGCAATGAAGGAAGTTTACTACATGGGTGATGGACGGGA
CGTGGCGCGGTGGGCAAGGCAGCGTTTGACTGCGCGAAAAAACGTGCGAC
CTTGGGTGTTGTACAATCCATTTCGACTCGTACTGCGGACGGTCATCGCC
CACGTGGGTTTCAGCATTGTCCTGCTTTCTGTGGTTTTCTCATTGCATTT
GCCGCTTAAAGGAGGAATAGAGAATTAG

Synonyms

Publications