jgi.p|Nanoce1779_2|588711, mRNA_4313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588711
Unique NamemRNA_4313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1463
Alignment locationscaffold_10:271519..273372 -

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Properties
Property NameValue
TranscriptId588797
TrackFilteredModels2
ProteinId588711
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:271519..273372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588711gene_4313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588711mRNA_4313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4313CDS_4313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4313 ID=mRNA_4313|Name=jgi.p|Nanoce1779_2|588711|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp
ACAGACAAAGCCCCCGGTGGATTTCGTCGCAGCCTCCACCATGTTTGGCT
GGGGCAAGAAGAAGGTCCAGGCGCCAGAGCCGGAGAAGCCAGTGGTGCCC
CGCCTCGACTTGAGCCAGCCCCGCTGGGACCAAAGCACCTTTGAAGGCCG
CGCCCGTCACTTTTTCACCACGACCAACCCGCTTAATGGCCTAGCCTCGG
ATGCCGAGTTGGACCACGCCAAGGCCTTGTTGGAGCAATATAAAGCGGGA
AAGGAACCGGCGGGGACGACGGACGAACAAATCTGGGAAGCGAAGCATTT
ATATGACTCAGCATTCCACCCTGAAACGGGGGAGAAGCTTTTCTTACCGG
GTCGTATGTCATTTCAGGTGCCGGGTAATATGGTAATTACTGGGTGTATG
ATGCAATTTTACCGGTCTATTCCGGCAGTGGTGTTTTGGCAATGGGTCAA
CCAGAGCTTTAATGCCGTCGTGAATTATTCGAATCGCAATGCTTCTGCGG
GCGTGACCACGGAGCAGCTAGGACAGGCTTATGTTGCGGCAACGGCTGCT
TCGGTTGCCACAGCGGTGGGATTTAATCGATTAATTGCGCGAAACCCCAA
ATTGAGCCAAGGGATGATTGGACGGTTTGTGCCTTTGCTGGCGGTGGCGG
CCGCCAACTGTGTGAATATTCCGCTGATGCGACAGAGAGAACTGGTAGAG
GGTATTGACCTCAAAACGAGGGAGGGGGTGGTGGTGGGGAAGAGCAAAGA
GGCGGCCAAGACGGCGGTGGCGCAGGTGGTGCCCTCTCGTATTCTGATGG
CGACACCCGGCATGTTGTTCCCTCCGCTGATCATGGCAAATCTGGAAAAC
ACCGCGCTATTGCGGGCCACACCTGGCCTTGGGGCCCCCATCATGGTGGC
GATGACGGGGCTGTGTTTATCATTTTCGACCCCCTTGTGTTGTGCGTTGT
TCCCGCAGGAGGCCACGATTAAATTGAGTCAGGTGGAACCGGAGCTACAA
GAGAACGCGAAAAAGATGACACCCGTGCCGGAGGTATTCTTCTATAATAA
GGGGCTTTAGATGACAGGTGAATAGTTGATGAGGTGGGAAATTGAGAAAA
GAAAAGGAATGGGGGGACGAAGGACACTGTACGATGATATTTGAGATATT
TTGGTGATGCAAGTCTTGGTAAGAGGAGAAGCAATGAGAACTTGTGGGCC
TTTGGGGGGAAAGGCGGGAGGGAAAGGGGCGTGCGCGGGAGGCTGCATGT
CTCACACATTCTTCAGCCGTGCATTGATGATTGTGGAAGGAAGAGGGCGC
GAGAGACGACTAAAGGCTTGCGCAGGAAGGCAGCGCGAGAGGGAGAGGCA
AGGAGAGGAAAATTCATGAATGCCACCGAAAAACAAAATCAGAATAAAAA
AGAAGGTAAAAAAGAACATCAAAAGGTTAAATTTGTACCGGTCTCGTCTT
GTGTTTATTTTCT
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protein sequence of jgi.p|Nanoce1779_2|588711

>mRNA_4313-protein ID=mRNA_4313-protein|Name=jgi.p|Nanoce1779_2|588711|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MFGWGKKKVQAPEPEKPVVPRLDLSQPRWDQSTFEGRARHFFTTTNPLNG
LASDAELDHAKALLEQYKAGKEPAGTTDEQIWEAKHLYDSAFHPETGEKL
FLPGRMSFQVPGNMVITGCMMQFYRSIPAVVFWQWVNQSFNAVVNYSNRN
ASAGVTTEQLGQAYVAATAASVATAVGFNRLIARNPKLSQGMIGRFVPLL
AVAAANCVNIPLMRQRELVEGIDLKTREGVVVGKSKEAAKTAVAQVVPSR
ILMATPGMLFPPLIMANLENTALLRATPGLGAPIMVAMTGLCLSFSTPLC
CALFPQEATIKLSQVEPELQENAKKMTPVPEVFFYNKGL*
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mRNA from alignment at scaffold_10:271519..273372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4313 ID=mRNA_4313|Name=jgi.p|Nanoce1779_2|588711|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp|location=Sequence derived from alignment at scaffold_10:271519..273372- (Nannochloropsis oceanica)
ACAGACAAAGCCCCCGGTGGATTTCGTCGCAGCCTCCACCATGTTTGGCT
GGGGCAAGAAGAAGGTCCAGGCGCCAGAGCCGGAGAAGCCAGTGGTGCCC
CGCCTCGACTTGAGCCAGGTAATTTGCATGGAAGAGAGGAGAGCTAGCAC
AAGGGGGAGGGTTTAAACGCAAGGACGGGAAGAGTAGAAATCGGAAAGGC
TTGCTGCACTATGTAGCAGGGTATGTCCTTGTACATCCTTTTCGTGCCCG
GAATGAGGCATGATTTATGGTTCGTCAGGCATTGGGGAGGCACGGAGGGA
GGAAAGAATGTCATTTTCCCCGCCTTCTCTGCTACTCTTACACAGCTAAC
GATTTTCCGTGGAAAGATTGGTAATAATCTCTTATTACCTATCGAGACGA
AGAGGGTGCACTCCTTTTTCAAACTTCGTTTCCTACGTTCTGTATAAGCA
ACACACAACCACCACCTCACATTTCCCTTCCCCCCCCAAAATTTTCCTCA
ACCCAACAGCCCCGCTGGGACCAAAGCACCTTTGAAGGCCGCGCCCGTCA
CTTTTTCACCACGACCAACCCGCTTAATGGCCTAGCCTCGGATGCCGAGT
TGGACCACGCCAAGGCCTTGTTGGAGCAATATAAAGCGGGAAAGGAACCG
GCGGGGACGACGGACGAACAAATCTGGGAAGCGAAGCATTTATATGACTC
AGCATTCCACCCTGAAACGGGGGAGAAGCTTTTCTTACCGGGTCGTATGT
CATTTCAGGTGCCGGGTAATATGGTAATTACTGGGTGTATGATGCAATTT
TACCGGTCTATTCCGGCAGTGGTGTTTTGGCAATGGGTCAACCAGAGCTT
TAATGCCGTCGTGAATTATTCGAATCGCAATGCTTCTGCGGGCGTGACCA
CGGAGCAGCTAGGACAGGCTTATGTTGCGGCAACGGCTGCTTCGGTTGCC
ACAGCGGTGGGATTTAATCGATTAATTGCGCGAAACCCCAAATTGAGCCA
AGGGATGATTGGACGGTTTGTGCCTTTGCTGGCGGTGGCGGCCGCCAACT
GTGTGAATATTCCGCTGATGCGACAGAGAGAACTGGTAGAGGGTATTGAC
CTCAAAACGAGGGAGGGGGTGGTGGTGGGGAAGAGCAAAGAGGCGGCCAA
GACGGCGGTGGCGCAGGTGGTGCCCTCTCGTATTCTGATGGCGACACCCG
GCATGTTGTTCCCTCCGCTGATCATGGCAAATCTGGAAAACACCGCGCTA
TTGCGGGCCACACCTGGCCTTGGGGCCCCCATCATGGTGGCGATGACGGG
GCTGTGTTTATCATTTTCGACCCCCTTGTGTTGTGCGTTGTTCCCGCAGG
AGGCCACGATTAAATTGAGTCAGGTGGAACCGGAGCTACAAGAGAACGCG
AAAAAGATGACACCCGTGCCGGAGGTATTCTTCTATAATAAGGGGCTTTA
GATGACAGGTGAATAGTTGATGAGGTGGGAAATTGAGAAAAGAAAAGGAA
TGGGGGGACGAAGGACACTGTACGATGATATTTGAGATATTTTGGTGATG
CAAGTCTTGGTAAGAGGAGAAGCAATGAGAACTTGTGGGCCTTTGGGGGG
AAAGGCGGGAGGGAAAGGGGCGTGCGCGGGAGGCTGCATGTCTCACACAT
TCTTCAGCCGTGCATTGATGATTGTGGAAGGAAGAGGGCGCGAGAGACGA
CTAAAGGCTTGCGCAGGAAGGCAGCGCGAGAGGGAGAGGCAAGGAGAGGA
AAATTCATGAATGCCACCGAAAAACAAAATCAGAATAAAAAAGAAGGTAA
AAAAGAACATCAAAAGGTTAAATTTGTACCGGTCTCGTCTTGTGTTTATT
TTCT
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Coding sequence (CDS) from alignment at scaffold_10:271519..273372-

>mRNA_4313 ID=mRNA_4313|Name=jgi.p|Nanoce1779_2|588711|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_10:271519..273372- (Nannochloropsis oceanica)
CCCCGCTGGGACCAAAGCACCTTTGAAGGCCGCGCCCGTCACTTTTTCAC
CACGACCAACCCGCTTAATGGCCTAGCCTCGGATGCCGAGTTGGACCACG
CCAAGGCCTTGTTGGAGCAATATAAAGCGGGAAAGGAACCGGCGGGGACG
ACGGACGAACAAATCTGGGAAGCGAAGCATTTATATGACTCAGCATTCCA
CCCTGAAACGGGGGAGAAGCTTTTCTTACCGGGTCGTATGTCATTTCAGG
TGCCGGGTAATATGGTAATTACTGGGTGTATGATGCAATTTTACCGGTCT
ATTCCGGCAGTGGTGTTTTGGCAATGGGTCAACCAGAGCTTTAATGCCGT
CGTGAATTATTCGAATCGCAATGCTTCTGCGGGCGTGACCACGGAGCAGC
TAGGACAGGCTTATGTTGCGGCAACGGCTGCTTCGGTTGCCACAGCGGTG
GGATTTAATCGATTAATTGCGCGAAACCCCAAATTGAGCCAAGGGATGAT
TGGACGGTTTGTGCCTTTGCTGGCGGTGGCGGCCGCCAACTGTGTGAATA
TTCCGCTGATGCGACAGAGAGAACTGGTAGAGGGTATTGACCTCAAAACG
AGGGAGGGGGTGGTGGTGGGGAAGAGCAAAGAGGCGGCCAAGACGGCGGT
GGCGCAGGTGGTGCCCTCTCGTATTCTGATGGCGACACCCGGCATGTTGT
TCCCTCCGCTGATCATGGCAAATCTGGAAAACACCGCGCTATTGCGGGCC
ACACCTGGCCTTGGGGCCCCCATCATGGTGGCGATGACGGGGCTGTGTTT
ATCATTTTCGACCCCCTTGTGTTGTGCGTTGTTCCCGCAGGAGGCCACGA
TTAAATTGAGTCAGGTGGAACCGGAGCTACAAGAGAACGCGAAAAAGATG
ACACCCGTGCCGGAGGTATTCTTCTATAATAAGGGGCTTTAGATGTTTGG
CTGGGGCAAGAAGAAGGTCCAGGCGCCAGAGCCGGAGAAGCCAGTGGTGC
CCCGCCTCGACTTGAGCCAGCCCCGCTGGGACCAAAGCACCTTTGAAGGC
CGCGCCCGTCACTTTTTCACCACGACCAACCCGCTTAATGGCCTAGCCTC
GGATGCCGAGTTGGACCACGCCAAGGCCTTGTTGGAGCAATATAAAGCGG
GAAAGGAACCGGCGGGGACGACGGACGAACAAATCTGGGAAGCGAAGCAT
TTATATGACTCAGCATTCCACCCTGAAACGGGGGAGAAGCTTTTCTTACC
GGGTCGTATGTCATTTCAGGTGCCGGGTAATATGGTAATTACTGGGTGTA
TGATGCAATTTTACCGGTCTATTCCGGCAGTGGTGTTTTGGCAATGGGTC
AACCAGAGCTTTAATGCCGTCGTGAATTATTCGAATCGCAATGCTTCTGC
GGGCGTGACCACGGAGCAGCTAGGACAGGCTTATGTTGCGGCAACGGCTG
CTTCGGTTGCCACAGCGGTGGGATTTAATCGATTAATTGCGCGAAACCCC
AAATTGAGCCAAGGGATGATTGGACGGTTTGTGCCTTTGCTGGCGGTGGC
GGCCGCCAACTGTGTGAATATTCCGCTGATGCGACAGAGAGAACTGGTAG
AGGGTATTGACCTCAAAACGAGGGAGGGGGTGGTGGTGGGGAAGAGCAAA
GAGGCGGCCAAGACGGCGGTGGCGCAGGTGGTGCCCTCTCGTATTCTGAT
GGCGACACCCGGCATGTTGTTCCCTCCGCTGATCATGGCAAATCTGGAAA
ACACCGCGCTATTGCGGGCCACACCTGGCCTTGGGGCCCCCATCATGGTG
GCGATGACGGGGCTGTGTTTATCATTTTCGACCCCCTTGTGTTGTGCGTT
GTTCCCGCAGGAGGCCACGATTAAATTGAGTCAGGTGGAACCGGAGCTAC
AAGAGAACGCGAAAAAGATGACACCCGTGCCGGAGGTATTCTTCTATAAT
AAGGGGCTTTAGATGTTTGGCTGGGGCAAGAAGAAGGTCCAGGCGCCAGA
GCCGGAGAAGCCAGTGGTGCCCCGCCTCGACTTGAGCCAG
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Synonyms
Publications