jgi.p|Nanoce1779_2|588740, mRNA_4323 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588740
Unique Name	mRNA_4323
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1494
Alignment location	scaffold_10:296720..298213 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588826
Track	FilteredModels2
ProteinId	588740

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:296720..298213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588740	gene_4323	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588740	mRNA_4323-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4323	CDS_4323	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:296720..298213+
coding sequence from alignment at scaffold_10:296720..298213+

mRNA sequence

>mRNA_4323 ID=mRNA_4323|Name=jgi.p|Nanoce1779_2|588740|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
GGGGGAGGGGGGGGGGGGAGGTTCGGTGGTCACTCCAAAGCGAGGGGGCC
CGATGGGAGCAGTGGCTTTCGGCAGCGGCGTTGTCGGGAGAAGGCGGGAA
CAGTAGCAGAGAGAGTGAAGGAGGAAGAGGCGGATATAGCGAAGCAGGAA
GAGGAGAAGAAGAAGGAAGTCAAGGGTGGGGGAGGGGCAATGGCGAGGAT
TCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAAGGAGGAGAAGG
AGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAAAGAACACAGCG
GGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGCAGCTTGAAGGG
CTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCACTCCTGCTCCTC
CCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGCTTTCTCCCTTATCC
CCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATTTTACCATCATCCTC
CTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTCCCTCCATGCCCGGA
GCTTTCATGCCCCCCATGATGATGCCTTACCACGGCGGCTCTCATCCTCC
TCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACGGGAACGGCGTGTTG
TTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCGGAGCGGAGGTCAAG
GCGGGGGGAGCGAACAACAACACCCCCACCACTACCACCAAGCCAGCCTA
CATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGCGTCCAAGAAGGTGC
TTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGAAGATTGTGGAAGGG
GCGAGTAGCGCTGAGAGGTAGATGGGGAGTGGATGTAGAGAGGAGGGAAG
AAAAACGACATGAAAAGGACGAAGAGAGAGAGAGAGATTTGAGGTGTGTG
GGTTAGATGAGGAGGGAATGTTAGTCAGAAAAATACTGCACTGATATACA
AGAATCAAGAGGAATTCTGTTGTCTTGTTGCTTTCGGTGTTTGTGTTGTC
AAGGTCGACCCAAGTAGGCAAGTACGTTCCCAGTTCATCGCCCGATCCCA
CTTCATTGCACCACATAATGACTCAGGGGACCTTCCAATGCCCGTAGATT
TAAAGTCTGGTACAAATTTTATAATTCAGTGTTGGTACCAATTTTATCAT
TCAGTGATTTAATTCGTTGCTGGAAGTGTTGGAGCGTGATGCGGTGTCTT
GGTACCCCCCCATGCCTTTCCTCCATGCCACTCTCTTTCTCCCTCTTAAT
TCTTCCAGTACATGAACAGCATCGCATCGCCTCGTCTATTGTCACCCAAG
TTTTGTTTCTATGTCTATAAATTTTTCCGCATTCTCGCCCAGGGTTGTCG
CCTCAGCCCCTCCTTCTCTCCTCATCCATCAACCCACCCATCAC

protein sequence of jgi.p|Nanoce1779_2|588740

>mRNA_4323-protein ID=mRNA_4323-protein|Name=jgi.p|Nanoce1779_2|588740|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MARILGMLSLKGKKEDKEEKEEKEDEADNTMVAKNTAGEAEGGVGVDATG
SLKGLLKLNGSNNNNSTPAPPPSQQQQQQQQQQQQQQQQQQQQQQQHQGF
LPYPRGPAGPGGPGPFYHHPPQPPPPGGYYFPPSMPGAFMPPMMMPYHGG
SHPPPPQATVVPRRPRERRVVNIVGTEGPGSAGAEVKAGGANNNTPTTTT
KPAYIMPSQVLRSGSASKKVLSTSSGAGTGEEKIVEGASSAER*

mRNA from alignment at scaffold_10:296720..298213+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4323 ID=mRNA_4323|Name=jgi.p|Nanoce1779_2|588740|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at scaffold_10:296720..298213+ (Nannochloropsis oceanica)
GGGGGAGGGGGGGGGGGGAGGTTCGGTGGTCACTCCAAAGCGAGGGGGCC
CGATGGGAGCAGTGGCTTTCGGCAGCGGCGTTGTCGGGAGAAGGCGGGAA
CAGTAGCAGAGAGAGTGAAGGAGGAAGAGGCGGATATAGCGAAGCAGGAA
GAGGAGAAGAAGAAGGAAGTCAAGGGTGGGGGAGGGGCAATGGCGAGGAT
TCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAAGGAGGAGAAGG
AGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAAAGAACACAGCG
GGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGCAGCTTGAAGGG
CTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCACTCCTGCTCCTC
CCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGCTTTCTCCCTTATCC
CCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATTTTACCATCATCCTC
CTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTCCCTCCATGCCCGGA
GCTTTCATGCCCCCCATGATGATGCCTTACCACGGCGGCTCTCATCCTCC
TCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACGGGAACGGCGTGTTG
TTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCGGAGCGGAGGTCAAG
GCGGGGGGAGCGAACAACAACACCCCCACCACTACCACCAAGCCAGCCTA
CATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGCGTCCAAGAAGGTGC
TTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGAAGATTGTGGAAGGG
GCGAGTAGCGCTGAGAGGTAGATGGGGAGTGGATGTAGAGAGGAGGGAAG
AAAAACGACATGAAAAGGACGAAGAGAGAGAGAGAGATTTGAGGTGTGTG
GGTTAGATGAGGAGGGAATGTTAGTCAGAAAAATACTGCACTGATATACA
AGAATCAAGAGGAATTCTGTTGTCTTGTTGCTTTCGGTGTTTGTGTTGTC
AAGGTCGACCCAAGTAGGCAAGTACGTTCCCAGTTCATCGCCCGATCCCA
CTTCATTGCACCACATAATGACTCAGGGGACCTTCCAATGCCCGTAGATT
TAAAGTCTGGTACAAATTTTATAATTCAGTGTTGGTACCAATTTTATCAT
TCAGTGATTTAATTCGTTGCTGGAAGTGTTGGAGCGTGATGCGGTGTCTT
GGTACCCCCCCATGCCTTTCCTCCATGCCACTCTCTTTCTCCCTCTTAAT
TCTTCCAGTACATGAACAGCATCGCATCGCCTCGTCTATTGTCACCCAAG
TTTTGTTTCTATGTCTATAAATTTTTCCGCATTCTCGCCCAGGGTTGTCG
CCTCAGCCCCTCCTTCTCTCCTCATCCATCAACCCACCCATCAC

Coding sequence (CDS) from alignment at scaffold_10:296720..298213+

>mRNA_4323 ID=mRNA_4323|Name=jgi.p|Nanoce1779_2|588740|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_10:296720..298213+ (Nannochloropsis oceanica)
ATGGCGAGGATTCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAA
GGAGGAGAAGGAGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAA
AGAACACAGCGGGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGC
AGCTTGAAGGGCTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCAC
TCCTGCTCCTCCCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGCTTT
CTCCCTTATCCCCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATTTTA
CCATCATCCTCCTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTCCCT
CCATGCCCGGAGCTTTCATGCCCCCCATGATGATGCCTTACCACGGCGGC
TCTCATCCTCCTCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACGGGA
ACGGCGTGTTGTTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCGGAG
CGGAGGTCAAGGCGGGGGGAGCGAACAACAACACCCCCACCACTACCACC
AAGCCAGCCTACATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGCGTC
CAAGAAGGTGCTTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGAAGA
TTGTGGAAGGGGCGAGTAGCGCTGAGAGGTAG

Synonyms

Publications