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Properties
| Property Name | Value |
|---|
| TranscriptId | 541930 |
| Track | FilteredModels2 |
| ProteinId | 541844 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:724882..726971 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4489 ID=mRNA_4489|Name=jgi.p|Nanoce1779_2|541844|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
GAACATCCTTTGAAAGACAGCGATGAGCTTTTTCCTATGGTGTGTGTGGT
CTCATGCTATTTAAGCCATCTCATGACTCCATCGTGACCAGTTCACTCAA
ATCACAGGAGCTGATAACTTCTAGCGTGCGACCTAGAACCAAAAGCCAGG
GGCACAGCCTCCCATAAAAGATAGCCGCCACGAGGCCCCTGCCCTACCTT
CACAAACCGCAAGAGCCATGAGTAACGAAGACAAGGTACAGCCGGACCTG
GTGGTGGGCCACGAAGGTGATACCAACGAGGTGTCATACACGAAGCGGGA
CCTGCTGATTTATGCCGTGGGCATTGGGTGCAAAAACACACCCGCAGAAC
TGCCGTTTCTATACGAAGACCATGAGAATTTTGTTGCATTCCCAACATTC
CCTATCGTGCTGCCCTTCAAAGGCACGTCCCATGACGTGGTGCCGTTTCC
CTCGCCGACGCTTTTCTCCTTCCCCCCTGGCCTTCCCGTCATGAATCCGG
CCATGACCCTCCACGCCGAGCAGGCTATCTACATCCTCGAGCCTCTCCCC
ACGAGTGGCGCGACACTGACTACGAAAAGCAAAATTTTGGGTATCTACGA
CAAAGGCAAAGGCGCCTTGATGCGGGAAGAAACCCGCTTCACCGACGAGC
AAGGTCGCCTCGTCGCGGTCGCCATCTCAGGTAGCTTCCTGCGGGGGGTC
ACGGGCTTCCAAAGCAAGGGCCCGGAGCTCCCTGCACGCATCATACCCCC
CTCCCGTGCGCCCGATGCGGTGGTGCAAGAGATGACACTTCCGGAGCAGG
CCTTAATTTATCGTCTATCGGGTGATTATAATTCCTTGCACGCCGACCCT
GAGATTGCGCAGACGGTGGGTTTCGACAAGCCTATCCTCCACGGCCTTTG
CACCTTTGGTCACAGCGCGCGGGCCGTTCTGCAGTGTGGCTTGATTCCTG
AGAATAACCCGGCGCTATTACGTTCGATGACGGCACGCTTCTCGAAGCCG
GCCTATCCGGGGGAGACCTTGGTGACGAGCTGTTGGAAGATAGAGGGGGT
GGGCGGGCAACGCATTGTCTTTCAGACGACCATCAAGGAACGTGGGGTGG
TGGTGTTGGAGGGCGGAATGGCCGAGATTGGGGAGGCGGGAATAAGCTTT
AGCAAGTTGTGAAGAAAAAGTAAATCGACGTGAATGAGGAATTGAATGAA
GTAAGGAAAGAAGTTATTATATTTCGAAATCTTCCTTTCACGCATGTACC
GGCGCAGGAGCCTCTCGTATTCATCTGTGTTCCAAGATCACAGAGAGACG
TTTTATTCGGACAACATGGATTGTTTACATACATCGTACAGCCCTTGATT
CGAAGACAATTGTCCCCATCATCATACAGACAGAAGTGTATGGGAATTTT
CCTCTGCCCACCACTACGCATGCAATGGCTTGCCTCCCTAAAACCATAGA
TGCAGGAAACCGAAAGGTGCCTCCG back to topprotein sequence of jgi.p|Nanoce1779_2|541844 >mRNA_4489-protein ID=mRNA_4489-protein|Name=jgi.p|Nanoce1779_2|541844|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MSNEDKVQPDLVVGHEGDTNEVSYTKRDLLIYAVGIGCKNTPAELPFLYE
DHENFVAFPTFPIVLPFKGTSHDVVPFPSPTLFSFPPGLPVMNPAMTLHA
EQAIYILEPLPTSGATLTTKSKILGIYDKGKGALMREETRFTDEQGRLVA
VAISGSFLRGVTGFQSKGPELPARIIPPSRAPDAVVQEMTLPEQALIYRL
SGDYNSLHADPEIAQTVGFDKPILHGLCTFGHSARAVLQCGLIPENNPAL
LRSMTARFSKPAYPGETLVTSCWKIEGVGGQRIVFQTTIKERGVVVLEGG
MAEIGEAGISFSKL* back to topmRNA from alignment at scaffold_10:724882..726971+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4489 ID=mRNA_4489|Name=jgi.p|Nanoce1779_2|541844|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at scaffold_10:724882..726971+ (Nannochloropsis oceanica)
GAACATCCTTTGAAAGACAGCGATGAGCTTTTTCCTATGGTGTGTGTGGT
CTCATGCTATTTAAGCCATCTCATGACTCCATCGTGACCAGTTCACTCAA
ATCACAGGAGCTGATAACTTCTAGCGTGCGACCTAGAACCAAAAGCCAGG
GGCACAGCCTCCCATAAAAGATAGCCGCCACGAGGCCCCTGCCCTACCTT
CACAAACCGCAAGAGCCATGAGTAACGAAGACAAGGTACAGCCGGACCTG
GTGGTGGGCCACGAAGGTGATACCAACGAGGTGTCATACACGAAGCGGGA
CCTGCTGATTTATGCCGTGGGCATTGGGTAAGTGTGGGGGCGGGGCTTCT
GAGAGCTAGTCGAACCCCGTCGCCTCACTCCCCACTCCCCCACTCCCCAT
CACTCTCATTTAGGTGCAAAAACACACCCGCAGAACTGCCGTTTCTATAC
GAAGACCATGAGAATTTTGTTGCATTCCCAACATTCCCTATCGTGCTGCC
CTTCAAAGGCACGTCCCATGACGTGGTGCCGTTTCCCTCGCCGACGCTTT
TCTCCTTCCCCCCTGGCCTTCCCGTCATGAATCCGGCCATGACCCTCCAC
GCCGAGCAGGTACGAAGCAGAGAAGAGAATAAGCTGACAAGCGCTTCTAT
CTCCTAGTTGGCGTTGTTGATTTCGTTTGTCTGTTGGTATTGAACGGCAA
GGTACAAGCGTAGCCAACTCACCAACCAACCATCCACTCACGCACTCACA
GGCTATCTACATCCTCGAGCCTCTCCCCACGAGTGGCGCGACACTGACTA
CGAAAAGCAAAATTTTGGTGCGTTTTTAAAGTAGTTAGTTTAGAATGAGA
GGTCGGGGGGTTTGTCGCAGAGAGAGAATGAGAGAGAGATGGAGGGGGAG
GCAAGTATGATTTGGGCGTCGTTCCTTCGTTTCCGTGAAACCCCGCTCAT
TGTTCATTTGCCAGAAGAAGCATGGTTGAATTCTAGGGCTTTCTGTTCTT
CATTAAATTGTCGAGAGGAGTCATGCCATAGAATTACCATACATTTATTG
CTACCACTCATCCGTTGACGCCAACTCTTTGAAATTCAACTTTGATTGTA
CTTCCACCCCTCACTCATTAGTGCTGCTTGGGTGCTGGTGGTCAATGTCA
TTTACTCGCGACAAATGATGGTCACCACTCATGTCATATCCTTTCTACCC
TCAGGGTATCTACGACAAAGGCAAAGGCGCCTTGATGCGGGAAGAAACCC
GCTTCACCGACGAGCAAGGTCGCCTCGTCGCGGTCGCCATCTCAGGTAGC
TTCCTGCGGGGGGTCACGGGCTTCCAAAGCAAGGGCCCGGAGCTCCCTGC
ACGCATCATACCCCCCTCCCGTGCGCCCGATGCGGTGGTGCAAGAGATGA
CACTTCCGGAGCAGGCCTTAATTTATCGTCTATCGGGTGATTATAATTCC
TTGCACGCCGACCCTGAGATTGCGCAGACGGTGGGTTTCGACAAGCCTAT
CCTCCACGGCCTTTGCACCTTTGGTCACAGCGCGCGGGCCGTTCTGCAGT
GTGGCTTGATTCCTGAGAATAACCCGGCGCTATTACGTTCGATGACGGCA
CGCTTCTCGAAGCCGGCCTATCCGGGGGAGACCTTGGTGACGAGCTGTTG
GAAGATAGAGGGGGTGGGCGGGCAACGCATTGTCTTTCAGACGACCATCA
AGGAACGTGGGGTGGTGGTGTTGGAGGGCGGAATGGCCGAGATTGGGGAG
GCGGGAATAAGCTTTAGCAAGTTGTGAAGAAAAAGTAAATCGACGTGAAT
GAGGAATTGAATGAAGTAAGGAAAGAAGTTATTATATTTCGAAATCTTCC
TTTCACGCATGTACCGGCGCAGGAGCCTCTCGTATTCATCTGTGTTCCAA
GATCACAGAGAGACGTTTTATTCGGACAACATGGATTGTTTACATACATC
GTACAGCCCTTGATTCGAAGACAATTGTCCCCATCATCATACAGACAGAA
GTGTATGGGAATTTTCCTCTGCCCACCACTACGCATGCAATGGCTTGCCT
CCCTAAAACCATAGATGCAGGAAACCGAAAGGTGCCTCCG back to topCoding sequence (CDS) from alignment at scaffold_10:724882..726971+ >mRNA_4489 ID=mRNA_4489|Name=jgi.p|Nanoce1779_2|541844|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_10:724882..726971+ (Nannochloropsis oceanica)
ATGAGTAACGAAGACAAGGTACAGCCGGACCTGGTGGTGGGCCACGAAGG
TGATACCAACGAGGTGTCATACACGAAGCGGGACCTGCTGATTTATGCCG
TGGGCATTGGGTGCAAAAACACACCCGCAGAACTGCCGTTTCTATACGAA
GACCATGAGAATTTTGTTGCATTCCCAACATTCCCTATCGTGCTGCCCTT
CAAAGGCACGTCCCATGACGTGGTGCCGTTTCCCTCGCCGACGCTTTTCT
CCTTCCCCCCTGGCCTTCCCGTCATGAATCCGGCCATGACCCTCCACGCC
GAGCAGGCTATCTACATCCTCGAGCCTCTCCCCACGAGTGGCGCGACACT
GACTACGAAAAGCAAAATTTTGGGTATCTACGACAAAGGCAAAGGCGCCT
TGATGCGGGAAGAAACCCGCTTCACCGACGAGCAAGGTCGCCTCGTCGCG
GTCGCCATCTCAGGTAGCTTCCTGCGGGGGGTCACGGGCTTCCAAAGCAA
GGGCCCGGAGCTCCCTGCACGCATCATACCCCCCTCCCGTGCGCCCGATG
CGGTGGTGCAAGAGATGACACTTCCGGAGCAGGCCTTAATTTATCGTCTA
TCGGGTGATTATAATTCCTTGCACGCCGACCCTGAGATTGCGCAGACGGT
GGGTTTCGACAAGCCTATCCTCCACGGCCTTTGCACCTTTGGTCACAGCG
CGCGGGCCGTTCTGCAGTGTGGCTTGATTCCTGAGAATAACCCGGCGCTA
TTACGTTCGATGACGGCACGCTTCTCGAAGCCGGCCTATCCGGGGGAGAC
CTTGGTGACGAGCTGTTGGAAGATAGAGGGGGTGGGCGGGCAACGCATTG
TCTTTCAGACGACCATCAAGGAACGTGGGGTGGTGGTGTTGGAGGGCGGA
ATGGCCGAGATTGGGGAGGCGGGAATAAGCTTTAGCAAGTTGTGAATGAG
TAACGAAGACAAGGTACAGCCGGACCTGGTGGTGGGCCACGAAGGTGATA
CCAACGAGGTGTCATACACGAAGCGGGACCTGCTGATTTATGCCGTGGGC
ATTGGGTGCAAAAACACACCCGCAGAACTGCCGTTTCTATACGAAGACCA
TGAGAATTTTGTTGCATTCCCAACATTCCCTATCGTGCTGCCCTTCAAAG
GCACGTCCCATGACGTGGTGCCGTTTCCCTCGCCGACGCTTTTCTCCTTC
CCCCCTGGCCTTCCCGTCATGAATCCGGCCATGACCCTCCACGCCGAGCA
GGCTATCTACATCCTCGAGCCTCTCCCCACGAGTGGCGCGACACTGACTA
CGAAAAGCAAAATTTTGGGTATCTACGACAAAGGCAAAGGCGCCTTGATG
CGGGAAGAAACCCGCTTCACCGACGAGCAAGGTCGCCTCGTCGCGGTCGC
CATCTCAGGTAGCTTCCTGCGGGGGGTCACGGGCTTCCAAAGCAAGGGCC
CGGAGCTCCCTGCACGCATCATACCCCCCTCCCGTGCGCCCGATGCGGTG
GTGCAAGAGATGACACTTCCGGAGCAGGCCTTAATTTATCGTCTATCGGG
TGATTATAATTCCTTGCACGCCGACCCTGAGATTGCGCAGACGGTGGGTT
TCGACAAGCCTATCCTCCACGGCCTTTGCACCTTTGGTCACAGCGCGCGG
GCCGTTCTGCAGTGTGGCTTGATTCCTGAGAATAACCCGGCGCTATTACG
TTCGATGACGGCACGCTTCTCGAAGCCGGCCTATCCGGGGGAGACCTTGG
TGACGAGCTGTTGGAAGATAGAGGGGGTGGGCGGGCAACGCATTGTCTTT
CAGACGACCATCAAGGAACGTGGGGTGGTGGTGTTGGAGGGCGGAATGGC
CGAGATTGGGGAGGCGGGAATAAGCTTTAGCAAGTTGTGAATGAGTAACG
AAGACAAGGTACAGCCGGACCTGGTGGTGGGCCACGAAGGTGATACCAAC
GAGGTGTCATACACGAAGCGGGACCTGCTGATTTATGCCGTGGGCATTGG
GTGCAAAAACACACCCGCAGAACTGCCGTTTCTATACGAAGACCATGAGA
ATTTTGTTGCATTCCCAACATTCCCTATCGTGCTGCCCTTCAAAGGCACG
TCCCATGACGTGGTGCCGTTTCCCTCGCCGACGCTTTTCTCCTTCCCCCC
TGGCCTTCCCGTCATGAATCCGGCCATGACCCTCCACGCCGAGCAGGCTA
TCTACATCCTCGAGCCTCTCCCCACGAGTGGCGCGACACTGACTACGAAA
AGCAAAATTTTGGGTATCTACGACAAAGGCAAAGGCGCCTTGATGCGGGA
AGAAACCCGCTTCACCGACGAGCAAGGTCGCCTCGTCGCGGTCGCCATCT
CAGGTAGCTTCCTGCGGGGGGTCACGGGCTTCCAAAGCAAGGGCCCGGAG
CTCCCTGCACGCATCATACCCCCCTCCCGTGCGCCCGATGCGGTGGTGCA
AGAGATGACACTTCCGGAGCAGGCCTTAATTTATCGTCTATCGGGTGATT
ATAATTCCTTGCACGCCGACCCTGAGATTGCGCAGACGGTGGGTTTCGAC
AAGCCTATCCTCCACGGCCTTTGCACCTTTGGTCACAGCGCGCGGGCCGT
TCTGCAGTGTGGCTTGATTCCTGAGAATAACCCGGCGCTATTACGTTCGA
TGACGGCACGCTTCTCGAAGCCGGCCTATCCGGGGGAGACCTTGGTGACG
AGCTGTTGGAAGATAGAGGGGGTGGGCGGGCAACGCATTGTCTTTCAGAC
GACCATCAAGGAACGTGGGGTGGTGGTGTTGGAGGGCGGAATGGCCGAGA
TTGGGGAGGCGGGAATAAGCTTTAGCAAGTTGTGAATGAGTAACGAAGAC
AAGGTACAGCCGGACCTGGTGGTGGGCCACGAAGGTGATACCAACGAGGT
GTCATACACGAAGCGGGACCTGCTGATTTATGCCGTGGGCATTGGGTGCA
AAAACACACCCGCAGAACTGCCGTTTCTATACGAAGACCATGAGAATTTT
GTTGCATTCCCAACATTCCCTATCGTGCTGCCCTTCAAAGGCACGTCCCA
TGACGTGGTGCCGTTTCCCTCGCCGACGCTTTTCTCCTTCCCCCCTGGCC
TTCCCGTCATGAATCCGGCCATGACCCTCCACGCCGAGCAGGCTATCTAC
ATCCTCGAGCCTCTCCCCACGAGTGGCGCGACACTGACTACGAAAAGCAA
AATTTTGGGTATCTACGACAAAGGCAAAGGCGCCTTGATGCGGGAAGAAA
CCCGCTTCACCGACGAGCAAGGTCGCCTCGTCGCGGTCGCCATCTCAGGT
AGCTTCCTGCGGGGGGTCACGGGCTTCCAAAGCAAGGGCCCGGAGCTCCC
TGCACGCATCATACCCCCCTCCCGTGCGCCCGATGCGGTGGTGCAAGAGA
TGACACTTCCGGAGCAGGCCTTAATTTATCGTCTATCGGGTGATTATAAT
TCCTTGCACGCCGACCCTGAGATTGCGCAGACGGTGGGTTTCGACAAGCC
TATCCTCCACGGCCTTTGCACCTTTGGTCACAGCGCGCGGGCCGTTCTGC
AGTGTGGCTTGATTCCTGAGAATAACCCGGCGCTATTACGTTCGATGACG
GCACGCTTCTCGAAGCCGGCCTATCCGGGGGAGACCTTGGTGACGAGCTG
TTGGAAGATAGAGGGGGTGGGCGGGCAACGCATTGTCTTTCAGACGACCA
TCAAGGAACGTGGGGTGGTGGTGTTGGAGGGCGGAATGGCCGAGATTGGG
GAGGCGGGAATAAGCTTTAGCAAGTTGTGA back to top
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