jgi.p|Nanoce1779_2|589192, mRNA_4458 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589192
Unique NamemRNA_4458
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1762
Alignment locationscaffold_10:647643..649404 -

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Properties
Property NameValue
TranscriptId589278
TrackFilteredModels2
ProteinId589192
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:647643..649404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589192gene_4458Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589192mRNA_4458-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4458CDS_4458Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4458 ID=mRNA_4458|Name=jgi.p|Nanoce1779_2|589192|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
CTATGAGAGTGTGGGTGCCTGATCACGCCACTCAGGACCTCAGACACATC
CCAAGCCCTCATACACAGTATCCACCAGTATGCCTAGGATTGCTTATCAC
GAATGCGGTGTGATGCCTCTTCCTTGTCAAACAGGGTGCGCCTTCTTCCC
CTTGCTTAGCGTCATCACACCTTTTTGTTAAACGCACCCTGCCATACACC
CCTGTCTTTCTCCCACACCATAACAACAGCTATGGGACAAGGAGCTCCGG
GGGGCATGCCTCCGCCGGGCGGGCAAGGCCCTGGTCAGGGCGAGCAGAAG
AAGGAGGACAAGACCAAGAAAAAGAAATTTGAACCCCGCCCGGCGGCTAG
GAGCGGGCGTCGCCGTCGTCGCAAGGGCCCTTCCGCAGCCGTTCGCATCC
CGCAAGTTTTTCCCACGTCCAAGTGCAAGCTACGACTGCTCAAGCTTGAC
CGTATCAAGGATTTCTTATTGCTGGAGGAGGAGTTTATCCGCAACCAGGA
AGTGTTTCGTCCCCATGAGGAGAAGGACCAGGAGGAACGGGCCAAGGTAG
AGGACCTGCGGGGCAGTCCCTTGGCGGTTGGGAACCTGGAGGAGATGATC
GACGACAACCACGCAATTGTCTCATCCTCGGTAGGCCCCGAGTACTACGT
GGGCGTGCTGTCTTTTGTGAACCAGGACTTGCTGGAACCCGGGTGCACGG
TGCTGCTGCACAACAAGGTGATGGCGGTGGTGGGCATCTTGTCAGACGAC
ACAGACCCTATGGTTTCTGTCATGAAGGTGGAGAAGGCCCCCCTGGAATC
CTATGCCGACATTGGCGGGCTGGAGTCGCAGATCCAGGAGATCAAGGAGG
CGGTAGAGCTGCCCTTGACCCACCCAGAGCTTTACGAGGACATAGGTATT
CGGCCCCCCAAGGGCGTCATTCTGTATGGCGAGCCAGGCACGGGGAAGAC
CTTACTAGCCAAGGCCGTAGCCAACCAGACATCGGCAACATTCTTGCGCG
TGGTGGGCTCGGAGCTAATTCAGAAGTATCTAGGTGATGGTCCCAAGTTG
GTGCGGGAGCTCTTTCGGGTGGCGGACGACTTGTCACCGTCAATTGTGTT
TATCGATGAGATTGACGCGGTGGGTTCCAAGCGGTATGATTCCAACTCGG
GGGGCACGCGGGAGATCCAGCGGACGATGTTGGAGTTGTTGAACCAGCTG
GATGGTTTTGATGAGCGGGGAGACGTTAAGGTGATCATGGCTACTAATAA
AATTGAGTCCCTCGATCCTGCCCTTATTCGTCCCGGGCGAATTGATCGAA
AGATTGAATTTCCCCTTCCAGATATCAAGACAAAGCGTCGAATTTTCGGG
ATCCACACGGGGCGGATGACCATGAGCGATGACGTGGACTTGGAAGTGTT
CGTCATGGCGAAGGACGAGCTGAGCGGCGCGGACATCAAGGCGGTGTGCA
CCGAGGCGGGGCTGTTGGCGCTGCGGGAGAGGAGGATGAAGGTGACTCAG
GAGGACTTTGTCAAGGCCAAGGAGAAGGCGTTGTACCGGAAGAAGGGCAA
CATCCCCGTCTCTATGTACTTGTAAAATTGAGGGGAGAGGAGGGGGCGGA
TGGTTTGTGCTGATGTGGTGGGTGCGGCAGAAGAAGGCAGGGGAAGGGAA
AACGAGCATAGACAACGAGTGGGAAAAAGTGAGACGGAATTGGAGAAAAA
AGGATAAAAACAAAGAGAGCCTTAAGAAAAACGAAAGAAGCAACACGAGC
CAGGCGAAACGA
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protein sequence of jgi.p|Nanoce1779_2|589192

>mRNA_4458-protein ID=mRNA_4458-protein|Name=jgi.p|Nanoce1779_2|589192|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MGQGAPGGMPPPGGQGPGQGEQKKEDKTKKKKFEPRPAARSGRRRRRKGP
SAAVRIPQVFPTSKCKLRLLKLDRIKDFLLLEEEFIRNQEVFRPHEEKDQ
EERAKVEDLRGSPLAVGNLEEMIDDNHAIVSSSVGPEYYVGVLSFVNQDL
LEPGCTVLLHNKVMAVVGILSDDTDPMVSVMKVEKAPLESYADIGGLESQ
IQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANQT
SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGSK
RYDSNSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIR
PGRIDRKIEFPLPDIKTKRRIFGIHTGRMTMSDDVDLEVFVMAKDELSGA
DIKAVCTEAGLLALRERRMKVTQEDFVKAKEKALYRKKGNIPVSMYL*
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mRNA from alignment at scaffold_10:647643..649404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4458 ID=mRNA_4458|Name=jgi.p|Nanoce1779_2|589192|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp|location=Sequence derived from alignment at scaffold_10:647643..649404- (Nannochloropsis oceanica)
CTATGAGAGTGTGGGTGCCTGATCACGCCACTCAGGACCTCAGACACATC
CCAAGCCCTCATACACAGTATCCACCAGTATGCCTAGGATTGCTTATCAC
GAATGCGGTGTGATGCCTCTTCCTTGTCAAACAGGGTGCGCCTTCTTCCC
CTTGCTTAGCGTCATCACACCTTTTTGTTAAACGCACCCTGCCATACACC
CCTGTCTTTCTCCCACACCATAACAACAGCTATGGGACAAGGAGCTCCGG
GGGGCATGCCTCCGCCGGGCGGGCAAGGCCCTGGTCAGGGCGAGCAGAAG
AAGGAGGACAAGACCAAGAAAAAGAAATTTGAACCCCGCCCGGCGGCTAG
GAGCGGGCGTCGCCGTCGTCGCAAGGGCCCTTCCGCAGCCGTTCGCATCC
CGCAAGTTTTTCCCACGTCCAAGTGCAAGCTACGACTGCTCAAGCTTGAC
CGTATCAAGGATTTCTTATTGCTGGAGGAGGAGTTTATCCGCAACCAGGA
AGTGTTTCGTCCCCATGAGGAGAAGGACCAGGAGGAACGGGCCAAGGTAG
AGGACCTGCGGGGCAGTCCCTTGGCGGTTGGGAACCTGGAGGAGATGATC
GACGACAACCACGCAATTGTCTCATCCTCGGTAGGCCCCGAGTACTACGT
GGGCGTGCTGTCTTTTGTGAACCAGGACTTGCTGGAACCCGGGTGCACGG
TGCTGCTGCACAACAAGGTGATGGCGGTGGTGGGCATCTTGTCAGACGAC
ACAGACCCTATGGTTTCTGTCATGAAGGTGGAGAAGGCCCCCCTGGAATC
CTATGCCGACATTGGCGGGCTGGAGTCGCAGATCCAGGAGATCAAGGAGG
CGGTAGAGCTGCCCTTGACCCACCCAGAGCTTTACGAGGACATAGGTATT
CGGCCCCCCAAGGGCGTCATTCTGTATGGCGAGCCAGGCACGGGGAAGAC
CTTACTAGCCAAGGCCGTAGCCAACCAGACATCGGCAACATTCTTGCGCG
TGGTGGGCTCGGAGCTAATTCAGAAGTATCTAGGTGATGGTCCCAAGTTG
GTGCGGGAGCTCTTTCGGGTGGCGGACGACTTGTCACCGTCAATTGTGTT
TATCGATGAGATTGACGCGGTGGGTTCCAAGCGGTATGATTCCAACTCGG
GGGGCACGCGGGAGATCCAGCGGACGATGTTGGAGTTGTTGAACCAGCTG
GATGGTTTTGATGAGCGGGGAGACGTTAAGGTGATCATGGCTACTAATAA
AATTGAGTCCCTCGATCCTGCCCTTATTCGTCCCGGGCGAATTGATCGAA
AGATTGAATTTCCCCTTCCAGATATCAAGACAAAGCGTCGAATTTTCGGG
ATCCACACGGGGCGGATGACCATGAGCGATGACGTGGACTTGGAAGTGTT
CGTCATGGCGAAGGACGAGCTGAGCGGCGCGGACATCAAGGCGGTGTGCA
CCGAGGCGGGGCTGTTGGCGCTGCGGGAGAGGAGGATGAAGGTGACTCAG
GAGGACTTTGTCAAGGCCAAGGAGAAGGCGTTGTACCGGAAGAAGGGCAA
CATCCCCGTCTCTATGTACTTGTAAAATTGAGGGGAGAGGAGGGGGCGGA
TGGTTTGTGCTGATGTGGTGGGTGCGGCAGAAGAAGGCAGGGGAAGGGAA
AACGAGCATAGACAACGAGTGGGAAAAAGTGAGACGGAATTGGAGAAAAA
AGGATAAAAACAAAGAGAGCCTTAAGAAAAACGAAAGAAGCAACACGAGC
CAGGCGAAACGA
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Coding sequence (CDS) from alignment at scaffold_10:647643..649404-

>mRNA_4458 ID=mRNA_4458|Name=jgi.p|Nanoce1779_2|589192|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_10:647643..649404- (Nannochloropsis oceanica)
ATGGGACAAGGAGCTCCGGGGGGCATGCCTCCGCCGGGCGGGCAAGGCCC
TGGTCAGGGCGAGCAGAAGAAGGAGGACAAGACCAAGAAAAAGAAATTTG
AACCCCGCCCGGCGGCTAGGAGCGGGCGTCGCCGTCGTCGCAAGGGCCCT
TCCGCAGCCGTTCGCATCCCGCAAGTTTTTCCCACGTCCAAGTGCAAGCT
ACGACTGCTCAAGCTTGACCGTATCAAGGATTTCTTATTGCTGGAGGAGG
AGTTTATCCGCAACCAGGAAGTGTTTCGTCCCCATGAGGAGAAGGACCAG
GAGGAACGGGCCAAGGTAGAGGACCTGCGGGGCAGTCCCTTGGCGGTTGG
GAACCTGGAGGAGATGATCGACGACAACCACGCAATTGTCTCATCCTCGG
TAGGCCCCGAGTACTACGTGGGCGTGCTGTCTTTTGTGAACCAGGACTTG
CTGGAACCCGGGTGCACGGTGCTGCTGCACAACAAGGTGATGGCGGTGGT
GGGCATCTTGTCAGACGACACAGACCCTATGGTTTCTGTCATGAAGGTGG
AGAAGGCCCCCCTGGAATCCTATGCCGACATTGGCGGGCTGGAGTCGCAG
ATCCAGGAGATCAAGGAGGCGGTAGAGCTGCCCTTGACCCACCCAGAGCT
TTACGAGGACATAGGTATTCGGCCCCCCAAGGGCGTCATTCTGTATGGCG
AGCCAGGCACGGGGAAGACCTTACTAGCCAAGGCCGTAGCCAACCAGACA
TCGGCAACATTCTTGCGCGTGGTGGGCTCGGAGCTAATTCAGAAGTATCT
AGGTGATGGTCCCAAGTTGGTGCGGGAGCTCTTTCGGGTGGCGGACGACT
TGTCACCGTCAATTGTGTTTATCGATGAGATTGACGCGGTGGGTTCCAAG
CGGTATGATTCCAACTCGGGGGGCACGCGGGAGATCCAGCGGACGATGTT
GGAGTTGTTGAACCAGCTGGATGGTTTTGATGAGCGGGGAGACGTTAAGG
TGATCATGGCTACTAATAAAATTGAGTCCCTCGATCCTGCCCTTATTCGT
CCCGGGCGAATTGATCGAAAGATTGAATTTCCCCTTCCAGATATCAAGAC
AAAGCGTCGAATTTTCGGGATCCACACGGGGCGGATGACCATGAGCGATG
ACGTGGACTTGGAAGTGTTCGTCATGGCGAAGGACGAGCTGAGCGGCGCG
GACATCAAGGCGGTGTGCACCGAGGCGGGGCTGTTGGCGCTGCGGGAGAG
GAGGATGAAGGTGACTCAGGAGGACTTTGTCAAGGCCAAGGAGAAGGCGT
TGTACCGGAAGAAGGGCAACATCCCCGTCTCTATGTACTTGTAA
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Synonyms
Publications