jgi.p|Nanoce1779_2|39681, mRNA_5872 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|39681
Unique NamemRNA_5872
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length828
Alignment locationscaffold_11:801073..802189 +

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Properties
Property NameValue
TranscriptId39767
TrackFilteredModels2
ProteinId39681
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:801073..802189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39681gene_5872Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39681mRNA_5872-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5872CDS_5872Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5872 ID=mRNA_5872|Name=jgi.p|Nanoce1779_2|39681|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
GGGAGGGAGGGAGGGAGGGAGGGGTAGTGAGACGCGGGGGGGAGGCAACC
CTCTGCTTCTTCCATATTCCACGATAGACTCCTTGAATCACCTTTACACG
CGATCTCGCTCGCTAGAATGCATGCACGCCCACCCTTCTCTTTCTCATTC
TCATCCTCGTCCTCATCCTCCTCCTTATTTTCGTTCTCCCTCTCCTTCTC
CCTTCGAACCCCTTCCTTTGGAGACACCTCGTCTCCTTTACCTTCTATTA
ATCATCACCTTAACTCATTTCCAACACTCAACAGCATGGGAGGGTTCCCG
GCACTCGGCGGTGCTGCCCCCGGTACCACAGGCATTGGAGGAGCAGGAAC
AGGAGGAGGAGGAGGAGGAGGAGGACTGCCGGGGTTGGATTTTTCGGCCT
TGTTGAATCAGATGGGGGGGGGGGGGGTTGGAGCACCGCACGGGGCGCCG
GCTCCCTCCGCCATGCCCGTCGCAGATCCCGCCACGCACTACGCCGCGCA
GTTGCAGCAACTCCGCGACATGGGCTTCGTGGATGAGGCGCGCAACATTC
AGGCCTTGCAAGCGACGAATGGAAATGTGAATGCGGCCATAGAGCGCCTG
CTCATGTAATTAGAGATGTGTCGCTGGAGACTGAGAGGGTGTTGGAGGGA
TAGGGAGAGGAGGGACAGGAGAGGAGAGAAGTACAAAGACCAAAATTACG
AAATTACAAGGGAAGCCTGACGAGCAGAAGAGCAGAATGGCAGCAGTCCG
CACGAGGAGTTGGAAGACAGACAAATATCGAAGATAAGGAGCACGCAGAA
TTGGAGGAGATTTGTAGGAGAAGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|39681

>mRNA_5872-protein ID=mRNA_5872-protein|Name=jgi.p|Nanoce1779_2|39681|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MHARPPFSFSFSSSSSSSSLFSFSLSFSLRTPSFGDTSSPLPSINHHLNS
FPTLNSMGGFPALGGAAPGTTGIGGAGTGGGGGGGGLPGLDFSALLNQMG
GGGVGAPHGAPAPSAMPVADPATHYAAQLQQLRDMGFVDEARNIQALQAT
NGNVNAAIERLLM*
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mRNA from alignment at scaffold_11:801073..802189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5872 ID=mRNA_5872|Name=jgi.p|Nanoce1779_2|39681|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_11:801073..802189+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGGTAGTGAGACGCGGGGGGGAGGCAACC
CTCTGCTTCTTCCATATTCCACGATAGACTCCTTGAATCACCTTTACACG
CGATCTCGCTCGCTAGAATGCATGCACGCCCACCCTTCTCTTTCTCATTC
TCATCCTCGTCCTCATCCTCCTCCTTATTTTCGTTCTCCCTCTCCTTCTC
CCTTCGAACCCCTTCCTTTGGAGACACCTCGTCTCCTTTACCTTCTATTA
ATCATCACCTTAACTCATTTCCAACACTCAACAGCATGGGAGGGTTCCCG
GCACTCGGCGGTGCTGCCCCCGGTACCACAGGCATTGGAGGAGCAGGAAC
AGGAGGAGGAGGAGGAGGAGGAGGACTGCCGGGGTTGGATTTTTCGGCCT
TGTTGAATCAGATGGGGGGGGGGGGGGTTGGAGCACCGCACGGGGCGCCG
GTACGTCGGGTTTCACCCCTGGCTCATTTTCCCTCCTTCCCTCCCTTTTT
CTCTTCCTCTCTCCTACGCGCGTGGGTCTTCTTTTCGTCTCTCCTACGCG
CGTGCACCCCATCATGGCCGTCAAGTAGTTTCAAGTACTGACATAACCCC
TCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCTCCCAGGCTCCCTCCGCC
ATGCCCGTCGCAGATCCCGCCACGCACTACGCCGCGCAGTTGCAGCAACT
CCGCGACATGGGCTTCGTGGATGAGGCGCGCAACATTCAGGTAGGGCGGG
AGGGCGGGGAGGAGGGCGGGAGGGGGGAACTGGAGAGATATTTGTGGGGG
AAGAACGCTCCCATACATTTATATTTCACTTTTTCTCACAGGCCTTGCAA
GCGACGAATGGAAATGTGAATGCGGCCATAGAGCGCCTGCTCATGTAATT
AGAGATGTGTCGCTGGAGACTGAGAGGGTGTTGGAGGGATAGGGAGAGGA
GGGACAGGAGAGGAGAGAAGTACAAAGACCAAAATTACGAAATTACAAGG
GAAGCCTGACGAGCAGAAGAGCAGAATGGCAGCAGTCCGCACGAGGAGTT
GGAAGACAGACAAATATCGAAGATAAGGAGCACGCAGAATTGGAGGAGAT
TTGTAGGAGAAGGAAGG
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Coding sequence (CDS) from alignment at scaffold_11:801073..802189+

>mRNA_5872 ID=mRNA_5872|Name=jgi.p|Nanoce1779_2|39681|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_11:801073..802189+ (Nannochloropsis oceanica)
ATGCATGCACGCCCACCCTTCTCTTTCTCATTCTCATCCTCGTCCTCATC
CTCCTCCTTATTTTCGTTCTCCCTCTCCTTCTCCCTTCGAACCCCTTCCT
TTGGAGACACCTCGTCTCCTTTACCTTCTATTAATCATCACCTTAACTCA
TTTCCAACACTCAACAGCATGGGAGGGTTCCCGGCACTCGGCGGTGCTGC
CCCCGGTACCACAGGCATTGGAGGAGCAGGAACAGGAGGAGGAGGAGGAG
GAGGAGGACTGCCGGGGTTGGATTTTTCGGCCTTGTTGAATCAGATGGGG
GGGGGGGGGGTTGGAGCACCGCACGGGGCGCCGGCTCCCTCCGCCATGCC
CGTCGCAGATCCCGCCACGCACTACGCCGCGCAGTTGCAGCAACTCCGCG
ACATGGGCTTCGTGGATGAGGCGCGCAACATTCAGGCCTTGCAAGCGACG
AATGGAAATGTGAATGCGGCCATAGAGCGCCTGCTCATGTAAATGCATGC
ACGCCCACCCTTCTCTTTCTCATTCTCATCCTCGTCCTCATCCTCCTCCT
TATTTTCGTTCTCCCTCTCCTTCTCCCTTCGAACCCCTTCCTTTGGAGAC
ACCTCGTCTCCTTTACCTTCTATTAATCATCACCTTAACTCATTTCCAAC
ACTCAACAGCATGGGAGGGTTCCCGGCACTCGGCGGTGCTGCCCCCGGTA
CCACAGGCATTGGAGGAGCAGGAACAGGAGGAGGAGGAGGAGGAGGAGGA
CTGCCGGGGTTGGATTTTTCGGCCTTGTTGAATCAGATGGGGGGGGGGGG
GGTTGGAGCACCGCACGGGGCGCCGGCTCCCTCCGCCATGCCCGTCGCAG
ATCCCGCCACGCACTACGCCGCGCAGTTGCAGCAACTCCGCGACATGGGC
TTCGTGGATGAGGCGCGCAACATTCAGGCCTTGCAAGCGACGAATGGAAA
TGTGAATGCGGCCATAGAGCGCCTGCTCATGTAAATGCATGCACGCCCAC
CCTTCTCTTTCTCATTCTCATCCTCGTCCTCATCCTCCTCCTTATTTTCG
TTCTCCCTCTCCTTCTCCCTTCGAACCCCTTCCTTTGGAGACACCTCGTC
TCCTTTACCTTCTATTAATCATCACCTTAACTCATTTCCAACACTCAACA
GCATGGGAGGGTTCCCGGCACTCGGCGGTGCTGCCCCCGGTACCACAGGC
ATTGGAGGAGCAGGAACAGGAGGAGGAGGAGGAGGAGGAGGACTGCCGGG
GTTGGATTTTTCGGCCTTGTTGAATCAGATGGGGGGGGGGGGGGTTGGAG
CACCGCACGGGGCGCCGGCTCCCTCCGCCATGCCCGTCGCAGATCCCGCC
ACGCACTACGCCGCGCAGTTGCAGCAACTCCGCGACATGGGCTTCGTGGA
TGAGGCGCGCAACATTCAGGCCTTGCAAGCGACGAATGGAAATGTGAATG
CGGCCATAGAGCGCCTGCTCATGTAA
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Synonyms
Publications