jgi.p|Nanoce1779_2|590061, mRNA_5707 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590061
Unique Name	mRNA_5707
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2826
Alignment location	scaffold_11:375474..378299 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590147
Track	FilteredModels2
ProteinId	590061

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:375474..378299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590061	gene_5707	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590061	mRNA_5707-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5707	CDS_5707	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:375474..378299+
coding sequence from alignment at scaffold_11:375474..378299+

mRNA sequence

>mRNA_5707 ID=mRNA_5707|Name=jgi.p|Nanoce1779_2|590061|organism=Nannochloropsis oceanica|type=mRNA|length=2826bp
TGCAGCGATGATGGCGTCTGCCGTTCGCTTTCTAGACTGTACACACGCAT
ACACACACATATATACATTCAATTCACTCATCAACCCACTCACACCTACA
CAGGAGATTTTCTGAAGGGACCCGCTGACGCGGAGGGTCTTGCAACTTTG
TAGTTTCACGCACGCTTTCAAGAATGATGCCAAGATGTAGGAGGTTATTG
ATAAGCACATGGAAAACATCCAGGGCCTGCATGACAAGCAACGCAAGCAT
CCGGCGGCTGCTCAGGACAACGAATGCTTCAACGTCTTTTCCAGTGCATC
GGCTTGTCAACTGGACCGGCAAAAAGGATTGCGACAGGGGCAACAGAAGC
AAAAAGAGAAGAAGGAGGCCACCATCATTCGATCCTGCGCTCGCCACTAC
GCTGCCTCTCTCTTATTATCAGCCCTCCTGTAACTCATTGCTCGCCGCTC
TTCATTGCAAATTTTCCACGTCCCCCCAAGCAGCACCATCGCCACCATCA
AAATCGTCTCCAGCCCCACCCTCTTCTTCCTTTGTCGATCGCTTCCCCAA
AGCCATGCAACCCTACCTGCGCCTGGCCCGCGTTGACAAACCCATCGGCA
CCTACCTCCTGCTCTGGCCAGGCTACTGGGGTCTTGCTCTTGCAGCAGCG
CCGGGAACTTTACCGGATTGGGGACTTTTGACGGCGGTTGGGGTGGGTAC
AGTGGTGATGCGCTCGGCTGGGTGCACGGTCAATGATTTGTGGGATCGGG
ATATAGACAAGAATGTAGAGCGGACCAAGAACCGGCCCATCACTTCGGGA
GAGATCTCAGTAACGAGTGGTGTTGTGTTTTTGGGGGCGCAGCTGTTGGC
GGGATTGGGGGTGTTGGTGCAGTTGAATGAATATAGTATTTACCTGGGCA
TGGCCTCGGTCCCCTTGGTTTTGACTTACCCTTTGATGAAGCGTTGGACG
AACTATCCTCAGCTTTTTCTCGGGGTTACCTTTAATTGGGGTGTTTTGAT
GGGGTGGGCGGCCACGCATGGCTCATGTGATTGGCCGGTGATCTTGCCGT
TGTATACCTCGGCAGTCGCTTGGACCATGGTTTATGATACTTTGTACGCG
CATCAAGATAAAAAGGATGATGCCCGCCTGGGGCTGCATTCGACTGCCTT
GACATTCGGTGAGGACAGAACTAAGCCTATTCTAGCGGGTTTCTCGGCGG
TGATGATCGGAGGATTGCTGGTAACGGGGGTGCAGGCGGATTTGGCATGG
CCTTTTAATGTGGGCACAGGTCTGACGGCGTGTTCTTTGTTGTGGCAGCT
TGGGACGGCAGAGCTCAATAATCCGGTAAATCTGGCAGCACGATTTGAAT
CAAATAAATGGGTCGGCGGGGTGGTGTTTGGGAGCATTGTGGCGGGGCGG
TACTTTTGTTGATTTTGGAAGGGGAGAGGGGGTTGTGGAGAAGGGGAGAG
ATCATAGGCGTTTGTGTACACCCTAAAGAATTAAATTGAGTGAAGCCATG
GGGACACGCCCATATCAAAAAGCAAAAGTCTAGTATTCATCTCTAGATTT
TGATATGGCGATTGCGCATCTTTGCTTTCTTGTTGGCCAAGAGGAGAAAA
TTGATACATGGTATGGGCCAAGGGAACATGCCGGCTTCAACGTCAAGCTG
TGTGAGTTGATGATTGATTGCATCGTGTGCCTGGCACGAGATGTCACGCA
CAATGCCACGAAATCATTTTCGACGCACTTACATGTGGAGGGGCTGGGCT
GGTATTGCCCTCTGGTGCCTCAGATCATGCGACCCCGCAGGCTCCCCTAT
CGCGATGCATATCATCAGCGCGTCATCAAGAACTAACCGTTATGTCGCAC
ACACACATACGACTCAAAACCTGCCCCTTCCCGCCTACACCAGCACAGTA
CACACCACACACTAGCATAAGACGCAATGGACGACCCAGAGGCGCTGGTA
CCCTTTTTGCCCTCCTCCTTCTCGCTGCCCACCGCTCCCTCCTCCATATC
ATCCTCCTCATCCTCCCCCTCTTACTCCTCCTCCTCGTCGCTTTCCCCTC
ATATCTCCCCCTCCAATGTTTCTGTGTCGTCGCTACCATGTCGCAACCAC
TACTATCGTCAGTCTCCACTATCATCGTACGTCCAGGTGGAGGAAGGCAC
GCTCCGCCGACATAACGCTCCTCCACCTTTCTCTTCTTCGGCTGCCTCGC
CATACTCCCTCTCCCACCTCCTCTCCGACGCATTCGAATGGTTTAAAGAG
GTAGTCATCTTCGCTCAGAAGGTATGGATGCCTCTTATCTTCTTTGGTGT
AATAGGCTGCTGTCATTTGCTAGGGTGGGCAATGCTTGTCTACAGCGCTT
TGGCCATCTGGGGACCCACGACACCTACAGCTGCTGCCGCTGCCGCTTCA
TCGCCATCAGTGTTAGCAGCAACATCATCGGAGGATGAAGCCATGCTACA
AATGAGACCGCCGCAATTCATTTCGGGCCCCGCATCCTTGGCTGATTGGC
AGAGCTTAGGTTTTATCATATATATGACCTCTGTGTTTGCCTCCTTTTTG
TGGTTGCAACACTTTGTGAGGACACCCCAGGAGCAGCCAGTGGTGAGTGA
GGAGCGACGGTCCAGCGCCAGGAGCTTGGAAATATTGGCTGTTTGAGCAG
TTCGGGGAGAGCTGAAGAAAAAGATGATGATGATGATGAACAAGAATTAC
AAGAGCAAAAACCAGGAGACGAAGGAGGAGCAGCAGCAGCATCAGCAGTA
GCAGAAGCGGCAGCGGCAGCAGCAGCAGCAGCAGGGACAATAGAAGCAGT
AGGAAGAGGAAATGGAGGAGGAGGAG

protein sequence of jgi.p|Nanoce1779_2|590061

>mRNA_5707-protein ID=mRNA_5707-protein|Name=jgi.p|Nanoce1779_2|590061|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MMPRCRRLLISTWKTSRACMTSNASIRRLLRTTNASTSFPVHRLVNWTGK
KDCDRGNRSKKRRRRPPSFDPALATTLPLSYYQPSCNSLLAALHCKFSTS
PQAAPSPPSKSSPAPPSSSFVDRFPKAMQPYLRLARVDKPIGTYLLLWPG
YWGLALAAAPGTLPDWGLLTAVGVGTVVMRSAGCTVNDLWDRDIDKNVER
TKNRPITSGEISVTSGVVFLGAQLLAGLGVLVQLNEYSIYLGMASVPLVL
TYPLMKRWTNYPQLFLGVTFNWGVLMGWAATHGSCDWPVILPLYTSAVAW
TMVYDTLYAHQDKKDDARLGLHSTALTFGEDRTKPILAGFSAVMIGGLLV
TGVQADLAWPFNVGTGLTACSLLWQLGTAELNNPVNLAARFESNKWVGGV
VFGSIVAGRYFC*

mRNA from alignment at scaffold_11:375474..378299+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5707 ID=mRNA_5707|Name=jgi.p|Nanoce1779_2|590061|organism=Nannochloropsis oceanica|type=mRNA|length=2826bp|location=Sequence derived from alignment at scaffold_11:375474..378299+ (Nannochloropsis oceanica)
TGCAGCGATGATGGCGTCTGCCGTTCGCTTTCTAGACTGTACACACGCAT
ACACACACATATATACATTCAATTCACTCATCAACCCACTCACACCTACA
CAGGAGATTTTCTGAAGGGACCCGCTGACGCGGAGGGTCTTGCAACTTTG
TAGTTTCACGCACGCTTTCAAGAATGATGCCAAGATGTAGGAGGTTATTG
ATAAGCACATGGAAAACATCCAGGGCCTGCATGACAAGCAACGCAAGCAT
CCGGCGGCTGCTCAGGACAACGAATGCTTCAACGTCTTTTCCAGTGCATC
GGCTTGTCAACTGGACCGGCAAAAAGGATTGCGACAGGGGCAACAGAAGC
AAAAAGAGAAGAAGGAGGCCACCATCATTCGATCCTGCGCTCGCCACTAC
GCTGCCTCTCTCTTATTATCAGCCCTCCTGTAACTCATTGCTCGCCGCTC
TTCATTGCAAATTTTCCACGTCCCCCCAAGCAGCACCATCGCCACCATCA
AAATCGTCTCCAGCCCCACCCTCTTCTTCCTTTGTCGATCGCTTCCCCAA
AGCCATGCAACCCTACCTGCGCCTGGCCCGCGTTGACAAACCCATCGGCA
CCTACCTCCTGCTCTGGCCAGGCTACTGGGGTCTTGCTCTTGCAGCAGCG
CCGGGAACTTTACCGGATTGGGGACTTTTGACGGCGGTTGGGGTGGGTAC
AGTGGTGATGCGCTCGGCTGGGTGCACGGTCAATGATTTGTGGGATCGGG
ATATAGACAAGAATGTAGAGCGGACCAAGAACCGGCCCATCACTTCGGGA
GAGATCTCAGTAACGAGTGGTGTTGTGTTTTTGGGGGCGCAGCTGTTGGC
GGGATTGGGGGTGTTGGTGCAGTTGAATGAATATAGTATTTACCTGGGCA
TGGCCTCGGTCCCCTTGGTTTTGACTTACCCTTTGATGAAGCGTTGGACG
AACTATCCTCAGCTTTTTCTCGGGGTTACCTTTAATTGGGGTGTTTTGAT
GGGGTGGGCGGCCACGCATGGCTCATGTGATTGGCCGGTGATCTTGCCGT
TGTATACCTCGGCAGTCGCTTGGACCATGGTTTATGATACTTTGTACGCG
CATCAAGATAAAAAGGATGATGCCCGCCTGGGGCTGCATTCGACTGCCTT
GACATTCGGTGAGGACAGAACTAAGCCTATTCTAGCGGGTTTCTCGGCGG
TGATGATCGGAGGATTGCTGGTAACGGGGGTGCAGGCGGATTTGGCATGG
CCTTTTAATGTGGGCACAGGTCTGACGGCGTGTTCTTTGTTGTGGCAGCT
TGGGACGGCAGAGCTCAATAATCCGGTAAATCTGGCAGCACGATTTGAAT
CAAATAAATGGGTCGGCGGGGTGGTGTTTGGGAGCATTGTGGCGGGGCGG
TACTTTTGTTGATTTTGGAAGGGGAGAGGGGGTTGTGGAGAAGGGGAGAG
ATCATAGGCGTTTGTGTACACCCTAAAGAATTAAATTGAGTGAAGCCATG
GGGACACGCCCATATCAAAAAGCAAAAGTCTAGTATTCATCTCTAGATTT
TGATATGGCGATTGCGCATCTTTGCTTTCTTGTTGGCCAAGAGGAGAAAA
TTGATACATGGTATGGGCCAAGGGAACATGCCGGCTTCAACGTCAAGCTG
TGTGAGTTGATGATTGATTGCATCGTGTGCCTGGCACGAGATGTCACGCA
CAATGCCACGAAATCATTTTCGACGCACTTACATGTGGAGGGGCTGGGCT
GGTATTGCCCTCTGGTGCCTCAGATCATGCGACCCCGCAGGCTCCCCTAT
CGCGATGCATATCATCAGCGCGTCATCAAGAACTAACCGTTATGTCGCAC
ACACACATACGACTCAAAACCTGCCCCTTCCCGCCTACACCAGCACAGTA
CACACCACACACTAGCATAAGACGCAATGGACGACCCAGAGGCGCTGGTA
CCCTTTTTGCCCTCCTCCTTCTCGCTGCCCACCGCTCCCTCCTCCATATC
ATCCTCCTCATCCTCCCCCTCTTACTCCTCCTCCTCGTCGCTTTCCCCTC
ATATCTCCCCCTCCAATGTTTCTGTGTCGTCGCTACCATGTCGCAACCAC
TACTATCGTCAGTCTCCACTATCATCGTACGTCCAGGTGGAGGAAGGCAC
GCTCCGCCGACATAACGCTCCTCCACCTTTCTCTTCTTCGGCTGCCTCGC
CATACTCCCTCTCCCACCTCCTCTCCGACGCATTCGAATGGTTTAAAGAG
GTAGTCATCTTCGCTCAGAAGGTATGGATGCCTCTTATCTTCTTTGGTGT
AATAGGCTGCTGTCATTTGCTAGGGTGGGCAATGCTTGTCTACAGCGCTT
TGGCCATCTGGGGACCCACGACACCTACAGCTGCTGCCGCTGCCGCTTCA
TCGCCATCAGTGTTAGCAGCAACATCATCGGAGGATGAAGCCATGCTACA
AATGAGACCGCCGCAATTCATTTCGGGCCCCGCATCCTTGGCTGATTGGC
AGAGCTTAGGTTTTATCATATATATGACCTCTGTGTTTGCCTCCTTTTTG
TGGTTGCAACACTTTGTGAGGACACCCCAGGAGCAGCCAGTGGTGAGTGA
GGAGCGACGGTCCAGCGCCAGGAGCTTGGAAATATTGGCTGTTTGAGCAG
TTCGGGGAGAGCTGAAGAAAAAGATGATGATGATGATGAACAAGAATTAC
AAGAGCAAAAACCAGGAGACGAAGGAGGAGCAGCAGCAGCATCAGCAGTA
GCAGAAGCGGCAGCGGCAGCAGCAGCAGCAGCAGGGACAATAGAAGCAGT
AGGAAGAGGAAATGGAGGAGGAGGAG

Coding sequence (CDS) from alignment at scaffold_11:375474..378299+

>mRNA_5707 ID=mRNA_5707|Name=jgi.p|Nanoce1779_2|590061|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_11:375474..378299+ (Nannochloropsis oceanica)
ATGATGCCAAGATGTAGGAGGTTATTGATAAGCACATGGAAAACATCCAG
GGCCTGCATGACAAGCAACGCAAGCATCCGGCGGCTGCTCAGGACAACGA
ATGCTTCAACGTCTTTTCCAGTGCATCGGCTTGTCAACTGGACCGGCAAA
AAGGATTGCGACAGGGGCAACAGAAGCAAAAAGAGAAGAAGGAGGCCACC
ATCATTCGATCCTGCGCTCGCCACTACGCTGCCTCTCTCTTATTATCAGC
CCTCCTGTAACTCATTGCTCGCCGCTCTTCATTGCAAATTTTCCACGTCC
CCCCAAGCAGCACCATCGCCACCATCAAAATCGTCTCCAGCCCCACCCTC
TTCTTCCTTTGTCGATCGCTTCCCCAAAGCCATGCAACCCTACCTGCGCC
TGGCCCGCGTTGACAAACCCATCGGCACCTACCTCCTGCTCTGGCCAGGC
TACTGGGGTCTTGCTCTTGCAGCAGCGCCGGGAACTTTACCGGATTGGGG
ACTTTTGACGGCGGTTGGGGTGGGTACAGTGGTGATGCGCTCGGCTGGGT
GCACGGTCAATGATTTGTGGGATCGGGATATAGACAAGAATGTAGAGCGG
ACCAAGAACCGGCCCATCACTTCGGGAGAGATCTCAGTAACGAGTGGTGT
TGTGTTTTTGGGGGCGCAGCTGTTGGCGGGATTGGGGGTGTTGGTGCAGT
TGAATGAATATAGTATTTACCTGGGCATGGCCTCGGTCCCCTTGGTTTTG
ACTTACCCTTTGATGAAGCGTTGGACGAACTATCCTCAGCTTTTTCTCGG
GGTTACCTTTAATTGGGGTGTTTTGATGGGGTGGGCGGCCACGCATGGCT
CATGTGATTGGCCGGTGATCTTGCCGTTGTATACCTCGGCAGTCGCTTGG
ACCATGGTTTATGATACTTTGTACGCGCATCAAGATAAAAAGGATGATGC
CCGCCTGGGGCTGCATTCGACTGCCTTGACATTCGGTGAGGACAGAACTA
AGCCTATTCTAGCGGGTTTCTCGGCGGTGATGATCGGAGGATTGCTGGTA
ACGGGGGTGCAGGCGGATTTGGCATGGCCTTTTAATGTGGGCACAGGTCT
GACGGCGTGTTCTTTGTTGTGGCAGCTTGGGACGGCAGAGCTCAATAATC
CGGTAAATCTGGCAGCACGATTTGAATCAAATAAATGGGTCGGCGGGGTG
GTGTTTGGGAGCATTGTGGCGGGGCGGTACTTTTGTTGA

Synonyms

Publications