Properties
| Property Name | Value |
|---|
| TranscriptId | 625608 |
| Track | FilteredModels2 |
| ProteinId | 625522 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:103244..104602 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5608 ID=mRNA_5608|Name=jgi.p|Nanoce1779_2|625522|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ACAGGAAGGCAAGAAGCGGAGGGGGAGCAGCAGGCAGCGTCAACATCAGT
AGTCACGACGTCTCCTGTCGTTAACTACCGCCACCACCACCACAACCCAA
CCAGCCATGCCTCCCCAAGGCGAAAATGAAGAGGAGGAATTTAGCAGCAG
CAGCAGTGATTGCCACCCCCAAGCGACTCCTGCCCATGTCCACTACTGCT
TTGAGGTCCTCTTACATCATTTTGACGGCGGGAATAGCCCACTTCCTGTC
CCGACGTTCGACACGACGGTGGAATGCCCTCTATTTGTGACGTGGGAGAA
GGAGGTGGTCGTCCGAGGGGGAGGGCGGGATGGAGGAAGGGGAGGAGGCT
GGGGGCACGGGCACCGCCAACTGCGTGGGTGCATCGGCACGTTGAGCCCG
AAGAGCTTGGGGAGTCTAAAAGAGTACGTGTACAATAGTGCGTTCAAGGA
CCGACGATTTTCCCCGATCGCGTCGCATGAGCTCTCGATGCTTGCCTGCA
GTGTGTCCCTGTTGGTGGCGTACGAGGAGGTGGGGAAGGGGAATGTGATG
GATTGGGAGGTAGGGGTACATGGGATTATTATCGCCTTTCAAGATGGGAT
GGGAAGAAATGCGAGGCATTTCTCTGCAACGTACCTCCCGGAGGTAGCGC
GGGAGCAAGGGTGGAGTCGGAGGGAGGCATTGGAGAGCTTGGTGAGGAAG
AGTGGGTATGCAGGTAGGATAGACAAGGGGGGGTTCTGGGATGGGGTGGC
GCTGACGAGGTATAGGAGTAGTAAGTTCAGTTTGACGTATGGGGAGTTCA
TAGAGGGGAGGGAGAGGAGGAAGGGGAGCGGTTCGTCCAAGAAGGTGGTC
GTGACGTGAGGGGAGGGAAAGGGCAGCGATGGCGGAACGGGAGGGTTGTA
TGATGAAGAGACGTTGTAGGGGTACTGAGACGCAGGAGGAGAAAGAGGAG
GAGGATGAAGCGGGATGGAGGAATTTGTCCATGAATTATCGTGTAGAAGT
AGGGGATGAGCTGGGATGACGCGTCGGTTGGAAAGGAGGAGGATGACGTG
GGGGAGTGGATGGTGTGCTGTTAGATAGGGACAAAGCAGTAGTATTATAG
AGGCTGAGTGTGGATGTCGTATGGATTATACTTATATATATATAATATGT
ATTAGGTCTTCGTTGAGAGTAGGCCCCCTCGCTTCTTAACCCTGAGTTTG
GGGGTTGGGATAGGGGTATAGAAAAGGAAGAAGAGGAGGGCAAAAAGAGG
AAAAACCCCGCTTGTTGTCGTT back to topprotein sequence of jgi.p|Nanoce1779_2|625522 >mRNA_5608-protein ID=mRNA_5608-protein|Name=jgi.p|Nanoce1779_2|625522|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MPPQGENEEEEFSSSSSDCHPQATPAHVHYCFEVLLHHFDGGNSPLPVPT
FDTTVECPLFVTWEKEVVVRGGGRDGGRGGGWGHGHRQLRGCIGTLSPKS
LGSLKEYVYNSAFKDRRFSPIASHELSMLACSVSLLVAYEEVGKGNVMDW
EVGVHGIIIAFQDGMGRNARHFSATYLPEVAREQGWSRREALESLVRKSG
YAGRIDKGGFWDGVALTRYRSSKFSLTYGEFIEGRERRKGSGSSKKVVVT
* back to topmRNA from alignment at scaffold_11:103244..104602+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5608 ID=mRNA_5608|Name=jgi.p|Nanoce1779_2|625522|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold_11:103244..104602+ (Nannochloropsis oceanica)
ACAGGAAGGCAAGAAGCGGAGGGGGAGCAGCAGGCAGCGTCAACATCAGT
AGTCACGACGTCTCCTGTCGTTAACTACCGCCACCACCACCACAACCCAA
CCAGCCATGCCTCCCCAAGGCGAAAATGAAGAGGAGGAATTTAGCAGCAG
CAGCAGTGATTGTGAGAGCGAGGAGGAAGCAGTCACTGTGCCAGTCCGCA
AAGGCAAGCCATCCTCCCCCGCCCTCCCTTCGTCTTTCCCTCCGGCAGGC
CACCCCCAAGCGACTCCTGCCCATGTCCACTACTGCTTTGAGGTCCTCTT
ACATCATTTTGACGGCGGGAATAGCCCACTTCCTGTCCCGACGTTCGACA
CGACGGTGGAATGCCCTCTATTTGTGACGTGGGAGAAGGAGGTGGTCGTC
CGAGGGGGAGGGCGGGATGGAGGAAGGGGAGGAGGCTGGGGGCACGGGCA
CCGCCAACTGCGTGGGTGCATCGGCACGTTGAGCCCGAAGAGCTTGGGGA
GTCTAAAAGAGTACGTGTACAATAGTGCGTTCAAGGACCGACGATTTTCC
CCGATCGCGTCGCATGAGCTCTCGATGCTTGCCTGCAGTGTGTCCCTGTT
GGTGGCGTACGAGGAGGTGGGGAAGGGGAATGTGATGGATTGGGAGGTAG
GGGTACATGGGATTATTATCGCCTTTCAAGATGGGATGGGAAGAAATGCG
AGGCATTTCTCTGCAACGTACCTCCCGGAGGTAGCGCGGGAGCAAGGGTG
GAGTCGGAGGGAGGCATTGGAGAGCTTGGTGAGGAAGAGTGGGTATGCAG
GTAGGATAGACAAGGGGGGGTTCTGGGATGGGGTGGCGCTGACGAGGTAT
AGGAGTAGTAAGTTCAGTTTGACGTATGGGGAGTTCATAGAGGGGAGGGA
GAGGAGGAAGGGGAGCGGTTCGTCCAAGAAGGTGGTCGTGACGTGAGGGG
AGGGAAAGGGCAGCGATGGCGGAACGGGAGGGTTGTATGATGAAGAGACG
TTGTAGGGGTACTGAGACGCAGGAGGAGAAAGAGGAGGAGGATGAAGCGG
GATGGAGGAATTTGTCCATGAATTATCGTGTAGAAGTAGGGGATGAGCTG
GGATGACGCGTCGGTTGGAAAGGAGGAGGATGACGTGGGGGAGTGGATGG
TGTGCTGTTAGATAGGGACAAAGCAGTAGTATTATAGAGGCTGAGTGTGG
ATGTCGTATGGATTATACTTATATATATATAATATGTATTAGGTCTTCGT
TGAGAGTAGGCCCCCTCGCTTCTTAACCCTGAGTTTGGGGGTTGGGATAG
GGGTATAGAAAAGGAAGAAGAGGAGGGCAAAAAGAGGAAAAACCCCGCTT
GTTGTCGTT back to topCoding sequence (CDS) from alignment at scaffold_11:103244..104602+ >mRNA_5608 ID=mRNA_5608|Name=jgi.p|Nanoce1779_2|625522|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_11:103244..104602+ (Nannochloropsis oceanica)
ATGCCTCCCCAAGGCGAAAATGAAGAGGAGGAATTTAGCAGCAGCAGCAG
TGATTGCCACCCCCAAGCGACTCCTGCCCATGTCCACTACTGCTTTGAGG
TCCTCTTACATCATTTTGACGGCGGGAATAGCCCACTTCCTGTCCCGACG
TTCGACACGACGGTGGAATGCCCTCTATTTGTGACGTGGGAGAAGGAGGT
GGTCGTCCGAGGGGGAGGGCGGGATGGAGGAAGGGGAGGAGGCTGGGGGC
ACGGGCACCGCCAACTGCGTGGGTGCATCGGCACGTTGAGCCCGAAGAGC
TTGGGGAGTCTAAAAGAGTACGTGTACAATAGTGCGTTCAAGGACCGACG
ATTTTCCCCGATCGCGTCGCATGAGCTCTCGATGCTTGCCTGCAGTGTGT
CCCTGTTGGTGGCGTACGAGGAGGTGGGGAAGGGGAATGTGATGGATTGG
GAGGTAGGGGTACATGGGATTATTATCGCCTTTCAAGATGGGATGGGAAG
AAATGCGAGGCATTTCTCTGCAACGTACCTCCCGGAGGTAGCGCGGGAGC
AAGGGTGGAGTCGGAGGGAGGCATTGGAGAGCTTGGTGAGGAAGAGTGGG
TATGCAGGTAGGATAGACAAGGGGGGGTTCTGGGATGGGGTGGCGCTGAC
GAGGTATAGGAGTAGTAAGTTCAGTTTGACGTATGGGGAGTTCATAGAGG
GGAGGGAGAGGAGGAAGGGGAGCGGTTCGTCCAAGAAGGTGGTCGTGACG
TGAATGCCTCCCCAAGGCGAAAATGAAGAGGAGGAATTTAGCAGCAGCAG
CAGTGATTGCCACCCCCAAGCGACTCCTGCCCATGTCCACTACTGCTTTG
AGGTCCTCTTACATCATTTTGACGGCGGGAATAGCCCACTTCCTGTCCCG
ACGTTCGACACGACGGTGGAATGCCCTCTATTTGTGACGTGGGAGAAGGA
GGTGGTCGTCCGAGGGGGAGGGCGGGATGGAGGAAGGGGAGGAGGCTGGG
GGCACGGGCACCGCCAACTGCGTGGGTGCATCGGCACGTTGAGCCCGAAG
AGCTTGGGGAGTCTAAAAGAGTACGTGTACAATAGTGCGTTCAAGGACCG
ACGATTTTCCCCGATCGCGTCGCATGAGCTCTCGATGCTTGCCTGCAGTG
TGTCCCTGTTGGTGGCGTACGAGGAGGTGGGGAAGGGGAATGTGATGGAT
TGGGAGGTAGGGGTACATGGGATTATTATCGCCTTTCAAGATGGGATGGG
AAGAAATGCGAGGCATTTCTCTGCAACGTACCTCCCGGAGGTAGCGCGGG
AGCAAGGGTGGAGTCGGAGGGAGGCATTGGAGAGCTTGGTGAGGAAGAGT
GGGTATGCAGGTAGGATAGACAAGGGGGGGTTCTGGGATGGGGTGGCGCT
GACGAGGTATAGGAGTAGTAAGTTCAGTTTGACGTATGGGGAGTTCATAG
AGGGGAGGGAGAGGAGGAAGGGGAGCGGTTCGTCCAAGAAGGTGGTCGTG
ACGTGA back to top
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