jgi.p|Nanoce1779_2|543182, mRNA_5486 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|543182
Unique Name	mRNA_5486
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1814
Alignment location	scaffold_13:530438..532251 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	543268
Track	FilteredModels2
ProteinId	543182

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:530438..532251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543182	gene_5486	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543182	mRNA_5486-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5486	CDS_5486	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:530438..532251+
coding sequence from alignment at scaffold_13:530438..532251+

mRNA sequence

>mRNA_5486 ID=mRNA_5486|Name=jgi.p|Nanoce1779_2|543182|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp
ACAGGGTCTAGCGGAACGCAAGTCAGTGGCTGGGTTTGCGTAGCTAACAT
GGCAGCCGCACCTCGGTCTCAATAGCAGGAGCGGAGGCAGACACGATTCT
GTCCCCTCCGTCTCGAACCATTATCACATGGCCCGCGAGCAACGACCCCA
ACACTACCCCTAGCTATCCTCTCTATCCCAGCACGTAGTAGAAGCAGCCA
CGCGACGAATGGGCAACGCTGGCAGCGGCAGCGCCACCGGTGGGGTGCTT
GCGCCTACCTCGTCCGTGGTGGTGATTGAAGGGCATGCCTTAAGAGTCAA
GTCATGTCTAGGCGAGACGGTCAGTCGTGCCAGCACAGTCTACCTAGCCG
AGGATGAAGCCCGTCAAAAGTTTGCTGTTAAGGTCTTACGCGTTCCTAAA
GGCGACGTCCCTTCGAACCATGCCGCGGAAATGGAGTTGGAGCATCATGC
TCGCTTGCCACTGCACCCACATGTCGTCACCTTTATAGGCTCCCGAGTCG
ACAACCACCAGCAACCGAGCAGCACCGATAGCAGTAGCAGCAGCAGCAGC
AGCAGCAGTGGGTTCAATCTCTACTACTTGCTCACGGAGTACTGCCCCAC
AACCGTCCGCTCCCTCCTCGAGGACGCTATCCGTCGAAAAGAGCCCCTCG
CCGAACGCGACATCGTCAACGTATTCACTTCCGCAGCTGCCGCCCTCACA
CACCTCCACTCCCACGGCCTCGCCCACCGGGACATTAAAATCGAAAATCT
CCGCTTCTCTTCCGAAGCCAATGGGCAGCGAGTCAAGCTCTGTGACCTAA
GCTCATGCAGTAGCGATCATCGTGCACTCCGCAATAGCACCGAGATCAGC
TACGCTGAAGAAGACATCGACAAACACACCACTCTCGCCTACCGCTCTCC
CGAGCAAGTCGACCTCTACTCCAAGAAAACCATCGGCCCCGCCGTAGATA
TTTGGGCACTGGGTGTCCTCCTTTACACTCTCTGCTGGTGGCGTACCCCA
TTCGAGGACAGGGCAGGGGCTGTCCAGCCCATGGCTATCCTGAACTGCAA
CTACGCCGCCCCTCCCTCCCTTCCTATCCCGGGCACCAACGGACAGCAAT
CGTTTCCTCCCTATTCCCCGGGCATCCTTACCCTCCTCCGCGCCTGCCTC
GAGCCCGACCCTGAGCAGCGCTTGACGGCGTCCGAGGTCCTCAACCAAGT
CCGAGATTTAATGGCTGCTGGGAAGATAGGACGACACGCGGACCTTCCTG
CCCTGTGTCCCTTCCTTCTCTCTCCCCCTTCCCGCCCCCTCGGGCGCCCC
GCATTTGCTCAATCTCTCTCTGCCTCGTCGCCCTCCGCCTCTCCATCGCC
CTTCGGGGCAGGTGCGAAGAAAACCGCGAAAACAAAAGAGGAGAAAGGGT
TGCAAGGACCGGGAGAGGAGGATTTTATTGGCTTGTTTGATACAAATTTG
AGATGGAATTCAAACGACACCACTTCAATTGTGACACAGAAGCATCCTAA
TCCGCCTGCCCCTTTTTTAAGTTTGTTGGCGGAGACTCTCACCGCCCAAG
CGACGACCCCCCGTGGAAGCGGGGGAGGAAAAGGGGGGAGGGAAGGTGGA
GAGGGCTTGTTGATGCCTCCAATCGCCTTGACTCCTGAAGGATCGTTTCT
TGCGGGAGGTATAGCGAAAGGAAGGGAGGGCGGGACGGCGGGAGGGACGA
CGGCTTTGATGAGGAGGTTAGATGCGTCGGGGTCTATGTCGCCGTCGTTG
TCATCGTCTAATTTGAGTGCGCTGGGCAGGAAGAGTAGTTTGGGCGTAGG
TAGGGAAGAGGGGG

protein sequence of jgi.p|Nanoce1779_2|543182

>mRNA_5486-protein ID=mRNA_5486-protein|Name=jgi.p|Nanoce1779_2|543182|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MGNAGSGSATGGVLAPTSSVVVIEGHALRVKSCLGETVSRASTVYLAEDE
ARQKFAVKVLRVPKGDVPSNHAAEMELEHHARLPLHPHVVTFIGSRVDNH
QQPSSTDSSSSSSSSSSGFNLYYLLTEYCPTTVRSLLEDAIRRKEPLAER
DIVNVFTSAAAALTHLHSHGLAHRDIKIENLRFSSEANGQRVKLCDLSSC
SSDHRALRNSTEISYAEEDIDKHTTLAYRSPEQVDLYSKKTIGPAVDIWA
LGVLLYTLCWWRTPFEDRAGAVQPMAILNCNYAAPPSLPIPGTNGQQSFP
PYSPGILTLLRACLEPDPEQRLTASEVLNQVRDLMAAGKIGRHADLPALC
PFLLSPPSRPLGRPAFAQSLSASSPSASPSPFGAGAKKTAKTKEEKGLQG
PGEEDFIGLFDTNLRWNSNDTTSIVTQKHPNPPAPFLSLLAETLTAQATT
PRGSGGGKGGREGGEGLLMPPIALTPEGSFLAGGIAKGREGGTAGGTTAL
MRRLDASGSMSPSLSSSNLSALGRKSSLGVGREEG

mRNA from alignment at scaffold_13:530438..532251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5486 ID=mRNA_5486|Name=jgi.p|Nanoce1779_2|543182|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_13:530438..532251+ (Nannochloropsis oceanica)
ACAGGGTCTAGCGGAACGCAAGTCAGTGGCTGGGTTTGCGTAGCTAACAT
GGCAGCCGCACCTCGGTCTCAATAGCAGGAGCGGAGGCAGACACGATTCT
GTCCCCTCCGTCTCGAACCATTATCACATGGCCCGCGAGCAACGACCCCA
ACACTACCCCTAGCTATCCTCTCTATCCCAGCACGTAGTAGAAGCAGCCA
CGCGACGAATGGGCAACGCTGGCAGCGGCAGCGCCACCGGTGGGGTGCTT
GCGCCTACCTCGTCCGTGGTGGTGATTGAAGGGCATGCCTTAAGAGTCAA
GTCATGTCTAGGCGAGACGGTCAGTCGTGCCAGCACAGTCTACCTAGCCG
AGGATGAAGCCCGTCAAAAGTTTGCTGTTAAGGTCTTACGCGTTCCTAAA
GGCGACGTCCCTTCGAACCATGCCGCGGAAATGGAGTTGGAGCATCATGC
TCGCTTGCCACTGCACCCACATGTCGTCACCTTTATAGGCTCCCGAGTCG
ACAACCACCAGCAACCGAGCAGCACCGATAGCAGTAGCAGCAGCAGCAGC
AGCAGCAGTGGGTTCAATCTCTACTACTTGCTCACGGAGTACTGCCCCAC
AACCGTCCGCTCCCTCCTCGAGGACGCTATCCGTCGAAAAGAGCCCCTCG
CCGAACGCGACATCGTCAACGTATTCACTTCCGCAGCTGCCGCCCTCACA
CACCTCCACTCCCACGGCCTCGCCCACCGGGACATTAAAATCGAAAATCT
CCGCTTCTCTTCCGAAGCCAATGGGCAGCGAGTCAAGCTCTGTGACCTAA
GCTCATGCAGTAGCGATCATCGTGCACTCCGCAATAGCACCGAGATCAGC
TACGCTGAAGAAGACATCGACAAACACACCACTCTCGCCTACCGCTCTCC
CGAGCAAGTCGACCTCTACTCCAAGAAAACCATCGGCCCCGCCGTAGATA
TTTGGGCACTGGGTGTCCTCCTTTACACTCTCTGCTGGTGGCGTACCCCA
TTCGAGGACAGGGCAGGGGCTGTCCAGCCCATGGCTATCCTGAACTGCAA
CTACGCCGCCCCTCCCTCCCTTCCTATCCCGGGCACCAACGGACAGCAAT
CGTTTCCTCCCTATTCCCCGGGCATCCTTACCCTCCTCCGCGCCTGCCTC
GAGCCCGACCCTGAGCAGCGCTTGACGGCGTCCGAGGTCCTCAACCAAGT
CCGAGATTTAATGGCTGCTGGGAAGATAGGACGACACGCGGACCTTCCTG
CCCTGTGTCCCTTCCTTCTCTCTCCCCCTTCCCGCCCCCTCGGGCGCCCC
GCATTTGCTCAATCTCTCTCTGCCTCGTCGCCCTCCGCCTCTCCATCGCC
CTTCGGGGCAGGTGCGAAGAAAACCGCGAAAACAAAAGAGGAGAAAGGGT
TGCAAGGACCGGGAGAGGAGGATTTTATTGGCTTGTTTGATACAAATTTG
AGATGGAATTCAAACGACACCACTTCAATTGTGACACAGAAGCATCCTAA
TCCGCCTGCCCCTTTTTTAAGTTTGTTGGCGGAGACTCTCACCGCCCAAG
CGACGACCCCCCGTGGAAGCGGGGGAGGAAAAGGGGGGAGGGAAGGTGGA
GAGGGCTTGTTGATGCCTCCAATCGCCTTGACTCCTGAAGGATCGTTTCT
TGCGGGAGGTATAGCGAAAGGAAGGGAGGGCGGGACGGCGGGAGGGACGA
CGGCTTTGATGAGGAGGTTAGATGCGTCGGGGTCTATGTCGCCGTCGTTG
TCATCGTCTAATTTGAGTGCGCTGGGCAGGAAGAGTAGTTTGGGCGTAGG
TAGGGAAGAGGGGG

Coding sequence (CDS) from alignment at scaffold_13:530438..532251+

>mRNA_5486 ID=mRNA_5486|Name=jgi.p|Nanoce1779_2|543182|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_13:530438..532251+ (Nannochloropsis oceanica)
ATGGGCAACGCTGGCAGCGGCAGCGCCACCGGTGGGGTGCTTGCGCCTAC
CTCGTCCGTGGTGGTGATTGAAGGGCATGCCTTAAGAGTCAAGTCATGTC
TAGGCGAGACGGTCAGTCGTGCCAGCACAGTCTACCTAGCCGAGGATGAA
GCCCGTCAAAAGTTTGCTGTTAAGGTCTTACGCGTTCCTAAAGGCGACGT
CCCTTCGAACCATGCCGCGGAAATGGAGTTGGAGCATCATGCTCGCTTGC
CACTGCACCCACATGTCGTCACCTTTATAGGCTCCCGAGTCGACAACCAC
CAGCAACCGAGCAGCACCGATAGCAGTAGCAGCAGCAGCAGCAGCAGCAG
TGGGTTCAATCTCTACTACTTGCTCACGGAGTACTGCCCCACAACCGTCC
GCTCCCTCCTCGAGGACGCTATCCGTCGAAAAGAGCCCCTCGCCGAACGC
GACATCGTCAACGTATTCACTTCCGCAGCTGCCGCCCTCACACACCTCCA
CTCCCACGGCCTCGCCCACCGGGACATTAAAATCGAAAATCTCCGCTTCT
CTTCCGAAGCCAATGGGCAGCGAGTCAAGCTCTGTGACCTAAGCTCATGC
AGTAGCGATCATCGTGCACTCCGCAATAGCACCGAGATCAGCTACGCTGA
AGAAGACATCGACAAACACACCACTCTCGCCTACCGCTCTCCCGAGCAAG
TCGACCTCTACTCCAAGAAAACCATCGGCCCCGCCGTAGATATTTGGGCA
CTGGGTGTCCTCCTTTACACTCTCTGCTGGTGGCGTACCCCATTCGAGGA
CAGGGCAGGGGCTGTCCAGCCCATGGCTATCCTGAACTGCAACTACGCCG
CCCCTCCCTCCCTTCCTATCCCGGGCACCAACGGACAGCAATCGTTTCCT
CCCTATTCCCCGGGCATCCTTACCCTCCTCCGCGCCTGCCTCGAGCCCGA
CCCTGAGCAGCGCTTGACGGCGTCCGAGGTCCTCAACCAAGTCCGAGATT
TAATGGCTGCTGGGAAGATAGGACGACACGCGGACCTTCCTGCCCTGTGT
CCCTTCCTTCTCTCTCCCCCTTCCCGCCCCCTCGGGCGCCCCGCATTTGC
TCAATCTCTCTCTGCCTCGTCGCCCTCCGCCTCTCCATCGCCCTTCGGGG
CAGGTGCGAAGAAAACCGCGAAAACAAAAGAGGAGAAAGGGTTGCAAGGA
CCGGGAGAGGAGGATTTTATTGGCTTGTTTGATACAAATTTGAGATGGAA
TTCAAACGACACCACTTCAATTGTGACACAGAAGCATCCTAATCCGCCTG
CCCCTTTTTTAAGTTTGTTGGCGGAGACTCTCACCGCCCAAGCGACGACC
CCCCGTGGAAGCGGGGGAGGAAAAGGGGGGAGGGAAGGTGGAGAGGGCTT
GTTGATGCCTCCAATCGCCTTGACTCCTGAAGGATCGTTTCTTGCGGGAG
GTATAGCGAAAGGAAGGGAGGGCGGGACGGCGGGAGGGACGACGGCTTTG
ATGAGGAGGTTAGATGCGTCGGGGTCTATGTCGCCGTCGTTGTCATCGTC
TAATTTGAGTGCGCTGGGCAGGAAGAGTAGTTTGGGCGTAGGTAGGGAAG
AGGGG

Synonyms

Publications