jgi.p|Nanoce1779_2|591919, mRNA_5260 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591919
Unique NamemRNA_5260
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2061
Alignment locationscaffold_13:5694..7754 -

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Properties
Property NameValue
TranscriptId592005
TrackFilteredModels2
ProteinId591919
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:5694..7754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591919gene_5260Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591919mRNA_5260-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5260CDS_5260Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5260 ID=mRNA_5260|Name=jgi.p|Nanoce1779_2|591919|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
AACAGCGCTGCACCGCGCGCCATTTATAAAATGGCCGACGTCGCAGAAGC
CGCCGTCGAAGCAGAGGATCAAAGTTCAGAGACGTTGCCCTTGCGCATTG
CAGCCGTGTTTATCATCATGGCGGTCTCTCTCTTAGGTTGTCTCTTCCCC
TTGCTCGTCCTTGACTTGAACGGCCGGGCCAAGTTTGGGAGCAATATTCC
CCTGACCCCTTCTTCACGGAACAAGAGCGACGGTGAGCGTGTCTTCCATG
GGGCGCACGCGATGCATCTGCTCAAGAGCTTTAGCGCGGGAATCATTCTC
TGCGTGGGGTTTGTGCACGTCCTAGCAGAGGCAAACGAAACCCTTGGAGA
CCTCGTTGATTTTCCTTTGGCACATTTTGTGGCTATGATGGGCTCTATCG
TTGTTCTAGCCCTCTCACAAATTGTCGACGGTCTTGTCACGAGCATGTCA
GAACGTGGCAAACCCCCCGGACCCTCGGGAGGAGCAGCTGAAGGCGCAGG
AGGGATTGGCCTGGTGGACCTTGTGAGGGGGGCAAGCACTTCTCTGAGCA
AGGTCGTGATTTCGACCCCGGACCCTCCTCTTCCCTTAGACAGAGCGCCG
TATTGTTTTCCTGGAGACGCACTTGAGCGTGATGAAATCGAGCAACAGCA
GCAGCAGCAGCACCTGACTCCATCCCATCGTCTGTGCCCCCTTACGACAA
GCGGGAACGGCACAGACAGCGACAGCAGCAACGACGCCCAGCACGACTCC
TCACTAAGCGCCCTCCCCACTTTCAGCGGTCGAAGTAAGAAGCCCGTGGG
GCTAAGCATCGACCCACCTTCCACGCCCATCATGTCCCCCGCTGTTCCGG
AAGAGGTCCCAATCCAATACCCCTTCGTCTCCCCTCGTGCGCAGTCCGCC
TTGAAAACCGCGTTGGCTGCCGGGGCTAAGCAAAAGGAGCTTGCGAGACA
CCAGCAGATGTTTGGGCGCGACAATAGTTTCAATCATGCGGGACACGACC
ATGGACGGGGGCGCGGACATAATGACGCCGTGCATGTTGTCCAAGCATTC
AAAACACATTCACTCGTCATCGCCTATATAATGGAGGTGGGGATCGTTTT
TCATTCCGTTTTGATTGGCATCGGCCTCGGCACAGCTACCTCCTCTTTAA
ACAACACCAAAACGCTGCTGGTCGCTATTTCCGTTCACCAGTTCTTTGAA
GGGGCTGGTCTTTCGACCTGTATTCTGGAAGCAGGGCTTTCCAGGAAGAA
AAACGCGATGATGTTTGGCTTGTTCTCTGTGACGACAAGTTTGGGGATCA
CGATTGGAATCGGGATAAGTAAGATTTATGAGGAGGGGTCGCGGGCGGGG
GCGCTTGTGGAAGGGATTTTCAATGCGTTTGCGGCTGGAATTTTGATATA
TTTGGCTTTGGTCGATATTTTACAGGAGGAGTTTAACAGACGGGAGGTGA
AGAAGCATAAGATTTGGCAGATTCAGATGATGATGTGTGTGTTGTTGGGG
GCCGGGGTGATGAGTGTGATTGCGATATGGGCGTAAGAGAGTTGAAGGGA
GGGAAGTGGGGAGAGGGAAGGGAGAGAGAGACGCATGGGCAAAAAGATGA
TGTGAGGGAGTTGGAGATGATGAGAAAGGGATCGACTCAGAGCTTGATGG
AGAAAATCAGTGAGAATCAGGGAAGGGGACATGTGTTCATAGCAGTTAAT
GTCGTTCTTCGAAATACGTTTTCTATACCCAAAACCAAGAGAGCGAAGAC
CTGTTGGATTGAAAAAATAAGCATCAGCAGCACTGTGCCGTGAGAAACGA
GAATTGACGAGCGCGCTTCCTCCGCTCTTGATACACCATATACATGAATG
ACTGGGAGTCTCCAGGGGGGAAAAAGATAGGCGAGGGAGAAAAGCGTGAA
GAGGTGGTGCAGCAGTCCTCACCACACACAGAAGGCAGAGAGAGAAAGAG
TCAGATTTTCTCGAACATGAAGTATAAGCAACGATGATCTAGAGCACTGA
ATTGTAAGGGAGAAGGAGAAGGGCAAAGAATGAATGCTGGCAAGTAAGCG
CCCAATGTTTT
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protein sequence of jgi.p|Nanoce1779_2|591919

>mRNA_5260-protein ID=mRNA_5260-protein|Name=jgi.p|Nanoce1779_2|591919|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MADVAEAAVEAEDQSSETLPLRIAAVFIIMAVSLLGCLFPLLVLDLNGRA
KFGSNIPLTPSSRNKSDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAE
ANETLGDLVDFPLAHFVAMMGSIVVLALSQIVDGLVTSMSERGKPPGPSG
GAAEGAGGIGLVDLVRGASTSLSKVVISTPDPPLPLDRAPYCFPGDALER
DEIEQQQQQQHLTPSHRLCPLTTSGNGTDSDSSNDAQHDSSLSALPTFSG
RSKKPVGLSIDPPSTPIMSPAVPEEVPIQYPFVSPRAQSALKTALAAGAK
QKELARHQQMFGRDNSFNHAGHDHGRGRGHNDAVHVVQAFKTHSLVIAYI
MEVGIVFHSVLIGIGLGTATSSLNNTKTLLVAISVHQFFEGAGLSTCILE
AGLSRKKNAMMFGLFSVTTSLGITIGIGISKIYEEGSRAGALVEGIFNAF
AAGILIYLALVDILQEEFNRREVKKHKIWQIQMMMCVLLGAGVMSVIAIW
A*
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mRNA from alignment at scaffold_13:5694..7754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5260 ID=mRNA_5260|Name=jgi.p|Nanoce1779_2|591919|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp|location=Sequence derived from alignment at scaffold_13:5694..7754- (Nannochloropsis oceanica)
AACAGCGCTGCACCGCGCGCCATTTATAAAATGGCCGACGTCGCAGAAGC
CGCCGTCGAAGCAGAGGATCAAAGTTCAGAGACGTTGCCCTTGCGCATTG
CAGCCGTGTTTATCATCATGGCGGTCTCTCTCTTAGGTTGTCTCTTCCCC
TTGCTCGTCCTTGACTTGAACGGCCGGGCCAAGTTTGGGAGCAATATTCC
CCTGACCCCTTCTTCACGGAACAAGAGCGACGGTGAGCGTGTCTTCCATG
GGGCGCACGCGATGCATCTGCTCAAGAGCTTTAGCGCGGGAATCATTCTC
TGCGTGGGGTTTGTGCACGTCCTAGCAGAGGCAAACGAAACCCTTGGAGA
CCTCGTTGATTTTCCTTTGGCACATTTTGTGGCTATGATGGGCTCTATCG
TTGTTCTAGCCCTCTCACAAATTGTCGACGGTCTTGTCACGAGCATGTCA
GAACGTGGCAAACCCCCCGGACCCTCGGGAGGAGCAGCTGAAGGCGCAGG
AGGGATTGGCCTGGTGGACCTTGTGAGGGGGGCAAGCACTTCTCTGAGCA
AGGTCGTGATTTCGACCCCGGACCCTCCTCTTCCCTTAGACAGAGCGCCG
TATTGTTTTCCTGGAGACGCACTTGAGCGTGATGAAATCGAGCAACAGCA
GCAGCAGCAGCACCTGACTCCATCCCATCGTCTGTGCCCCCTTACGACAA
GCGGGAACGGCACAGACAGCGACAGCAGCAACGACGCCCAGCACGACTCC
TCACTAAGCGCCCTCCCCACTTTCAGCGGTCGAAGTAAGAAGCCCGTGGG
GCTAAGCATCGACCCACCTTCCACGCCCATCATGTCCCCCGCTGTTCCGG
AAGAGGTCCCAATCCAATACCCCTTCGTCTCCCCTCGTGCGCAGTCCGCC
TTGAAAACCGCGTTGGCTGCCGGGGCTAAGCAAAAGGAGCTTGCGAGACA
CCAGCAGATGTTTGGGCGCGACAATAGTTTCAATCATGCGGGACACGACC
ATGGACGGGGGCGCGGACATAATGACGCCGTGCATGTTGTCCAAGCATTC
AAAACACATTCACTCGTCATCGCCTATATAATGGAGGTGGGGATCGTTTT
TCATTCCGTTTTGATTGGCATCGGCCTCGGCACAGCTACCTCCTCTTTAA
ACAACACCAAAACGCTGCTGGTCGCTATTTCCGTTCACCAGTTCTTTGAA
GGGGCTGGTCTTTCGACCTGTATTCTGGAAGCAGGGCTTTCCAGGAAGAA
AAACGCGATGATGTTTGGCTTGTTCTCTGTGACGACAAGTTTGGGGATCA
CGATTGGAATCGGGATAAGTAAGATTTATGAGGAGGGGTCGCGGGCGGGG
GCGCTTGTGGAAGGGATTTTCAATGCGTTTGCGGCTGGAATTTTGATATA
TTTGGCTTTGGTCGATATTTTACAGGAGGAGTTTAACAGACGGGAGGTGA
AGAAGCATAAGATTTGGCAGATTCAGATGATGATGTGTGTGTTGTTGGGG
GCCGGGGTGATGAGTGTGATTGCGATATGGGCGTAAGAGAGTTGAAGGGA
GGGAAGTGGGGAGAGGGAAGGGAGAGAGAGACGCATGGGCAAAAAGATGA
TGTGAGGGAGTTGGAGATGATGAGAAAGGGATCGACTCAGAGCTTGATGG
AGAAAATCAGTGAGAATCAGGGAAGGGGACATGTGTTCATAGCAGTTAAT
GTCGTTCTTCGAAATACGTTTTCTATACCCAAAACCAAGAGAGCGAAGAC
CTGTTGGATTGAAAAAATAAGCATCAGCAGCACTGTGCCGTGAGAAACGA
GAATTGACGAGCGCGCTTCCTCCGCTCTTGATACACCATATACATGAATG
ACTGGGAGTCTCCAGGGGGGAAAAAGATAGGCGAGGGAGAAAAGCGTGAA
GAGGTGGTGCAGCAGTCCTCACCACACACAGAAGGCAGAGAGAGAAAGAG
TCAGATTTTCTCGAACATGAAGTATAAGCAACGATGATCTAGAGCACTGA
ATTGTAAGGGAGAAGGAGAAGGGCAAAGAATGAATGCTGGCAAGTAAGCG
CCCAATGTTTT
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Coding sequence (CDS) from alignment at scaffold_13:5694..7754-

>mRNA_5260 ID=mRNA_5260|Name=jgi.p|Nanoce1779_2|591919|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_13:5694..7754- (Nannochloropsis oceanica)
ATGGCCGACGTCGCAGAAGCCGCCGTCGAAGCAGAGGATCAAAGTTCAGA
GACGTTGCCCTTGCGCATTGCAGCCGTGTTTATCATCATGGCGGTCTCTC
TCTTAGGTTGTCTCTTCCCCTTGCTCGTCCTTGACTTGAACGGCCGGGCC
AAGTTTGGGAGCAATATTCCCCTGACCCCTTCTTCACGGAACAAGAGCGA
CGGTGAGCGTGTCTTCCATGGGGCGCACGCGATGCATCTGCTCAAGAGCT
TTAGCGCGGGAATCATTCTCTGCGTGGGGTTTGTGCACGTCCTAGCAGAG
GCAAACGAAACCCTTGGAGACCTCGTTGATTTTCCTTTGGCACATTTTGT
GGCTATGATGGGCTCTATCGTTGTTCTAGCCCTCTCACAAATTGTCGACG
GTCTTGTCACGAGCATGTCAGAACGTGGCAAACCCCCCGGACCCTCGGGA
GGAGCAGCTGAAGGCGCAGGAGGGATTGGCCTGGTGGACCTTGTGAGGGG
GGCAAGCACTTCTCTGAGCAAGGTCGTGATTTCGACCCCGGACCCTCCTC
TTCCCTTAGACAGAGCGCCGTATTGTTTTCCTGGAGACGCACTTGAGCGT
GATGAAATCGAGCAACAGCAGCAGCAGCAGCACCTGACTCCATCCCATCG
TCTGTGCCCCCTTACGACAAGCGGGAACGGCACAGACAGCGACAGCAGCA
ACGACGCCCAGCACGACTCCTCACTAAGCGCCCTCCCCACTTTCAGCGGT
CGAAGTAAGAAGCCCGTGGGGCTAAGCATCGACCCACCTTCCACGCCCAT
CATGTCCCCCGCTGTTCCGGAAGAGGTCCCAATCCAATACCCCTTCGTCT
CCCCTCGTGCGCAGTCCGCCTTGAAAACCGCGTTGGCTGCCGGGGCTAAG
CAAAAGGAGCTTGCGAGACACCAGCAGATGTTTGGGCGCGACAATAGTTT
CAATCATGCGGGACACGACCATGGACGGGGGCGCGGACATAATGACGCCG
TGCATGTTGTCCAAGCATTCAAAACACATTCACTCGTCATCGCCTATATA
ATGGAGGTGGGGATCGTTTTTCATTCCGTTTTGATTGGCATCGGCCTCGG
CACAGCTACCTCCTCTTTAAACAACACCAAAACGCTGCTGGTCGCTATTT
CCGTTCACCAGTTCTTTGAAGGGGCTGGTCTTTCGACCTGTATTCTGGAA
GCAGGGCTTTCCAGGAAGAAAAACGCGATGATGTTTGGCTTGTTCTCTGT
GACGACAAGTTTGGGGATCACGATTGGAATCGGGATAAGTAAGATTTATG
AGGAGGGGTCGCGGGCGGGGGCGCTTGTGGAAGGGATTTTCAATGCGTTT
GCGGCTGGAATTTTGATATATTTGGCTTTGGTCGATATTTTACAGGAGGA
GTTTAACAGACGGGAGGTGAAGAAGCATAAGATTTGGCAGATTCAGATGA
TGATGTGTGTGTTGTTGGGGGCCGGGGTGATGAGTGTGATTGCGATATGG
GCGTAA
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Synonyms
Publications