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Properties
| Property Name | Value |
|---|
| TranscriptId | 592522 |
| Track | FilteredModels2 |
| ProteinId | 592436 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:367512..368904 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5407 ID=mRNA_5407|Name=jgi.p|Nanoce1779_2|592436|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
AACAACAGAAGCCTCCTCTTCAACCTCCAACTCCACGGCCTCAACCCATA
ATAAGCTAAACATGCTCTCCACTTTGGCATCGAGTTTGAAACGAGCCGCC
GCGCAGCCCATCACCTTACGGATGGCCGGCTTGACTCTTGCGCGGGCCAG
TATGATGACCATCTCCCGCGCCTCGACGCCCGCCGACTCGCACTTCATTC
TAACCGCCACGGGTCCTGACCGAGCAGGTATTGTGTTTGATATTGCTAAG
TTGGTTTTGGACAATAACGGGGATATCCAAGAATCCCGGATGATGCGCAT
GGGTTGTGACTTCTCCTTAATGATGCGCGTTGCCGCCCCCAAACCTGATG
CCGATCAAATCACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTGTCATT
ACCCACCCGGTGACTGCCGAAAGAGCTAATCAGATCGTTCCCAAGCCTGT
GTGGAAGGCGATTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTTGGTTT
ACAAAGTCACTGAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAAAGCTA
CATACCGAGACGAAAATTGCGCCATTCGGGGGCACGGTCCTATTTTTGAT
GGATGGGACAATCATCTCGGAGAAGGCGATTGATTTTAAAGAGTTGAAGG
AGGCGAGTGACAGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGTTGAAG
CCAGTGCCGGCGAATGATCAGTAGGAAGGCGGGAGGCTAGGTGGAAGGGA
GGGTAGTGGCGATGGTGGCGTACAGTGACTTGATGGGGAGGAGCAAATCA
ATCATGCCTTTTTTGGCATTTTTCTATTGTCTATCTGCGGTACTACAATT
CGTTGTTATACAGTCACGGATGGAAGGAAGAAGCAGCAGTAGAGTAGGGG
ATAAACCAATGAGATAAGGGAGCTGATGTAACGAGACCAGGACGCCTGAA
ATTAAAGATAGAAAAACCACAAGTAGAGCCAGGAGCGATGA back to topprotein sequence of jgi.p|Nanoce1779_2|592436 >mRNA_5407-protein ID=mRNA_5407-protein|Name=jgi.p|Nanoce1779_2|592436|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPADSHFILTAT
GPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQI
TRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVT
ELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASD
SLSSFLGIDLELKPVPANDQ* back to topmRNA from alignment at scaffold_13:367512..368904- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5407 ID=mRNA_5407|Name=jgi.p|Nanoce1779_2|592436|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp|location=Sequence derived from alignment at scaffold_13:367512..368904- (Nannochloropsis oceanica)
AACAACAGAAGCCTCCTCTTCAACCTCCAACTCCACGGCCTCAACCCATA
ATAAGCTAAACATGCTCTCCACTTTGGCATCGAGTTTGAAACGAGGTACG
TCGACTTTGTGGATGAAGAGATCCCAGACCCTTGTGTGGCCATGCGGGTT
CCATACCGATTCAATCTCTTTTGCACCTCCCCCCATGTGTAATTCTGTCC
CATTGCCTGGCAAACAAGCGACATGTTTTCAACTCCCTTTCCACGCCATT
GGTGTTTCTGCCATGTCCAGCTCGTAACCGATGTGGCGGGGCTCAGATTC
CGATTACCATTTATATCCCCCATCTCCCCTCCGACCGCGGCCGCACCTAT
TTCGGGCTGCTTGGCTAATTGATTGAAAGGGTCAAATGATTCTATCCTCA
TTTGCTGGGAAGTTTTCCTAAATATTTACAGTTACCTCAATCTGTTTATC
CTGTTGCCCTCTCCCTCCCTTTGCTCTCCGCCCATCTCCTTCCGCAGCCG
CCGCGCAGCCCATCACCTTACGGATGGCCGGCTTGACTCTTGCGCGGGCC
AGTATGATGACCATCTCCCGCGCCTCGACGCCCGCCGACTCGCACTTCAT
TCTAACCGCCACGGGTCCTGACCGAGCAGGTATTGTGTTTGATATTGCTA
AGTTGGTTTTGGACAATAACGGGGATATCCAAGAATCCCGGATGATGCGC
ATGGGTTGTGACTTCTCCTTAATGATGCGCGTTGCCGCCCCCAAACCTGA
TGCCGATCAAATCACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTGTCA
TTACCCACCCGGTGACTGCCGAAAGAGCTAATCAGATCGTTCCCAAGCCT
GTGTGGAAGGCGATTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTTGGT
TTACAAAGTCACTGAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAAAGC
TACATACCGAGACGAAAATTGCGCCATTCGGGGGCACGGTCCTATTTTTG
ATGGATGGGACAATCATCTCGGAGAAGGCGATTGATTTTAAAGAGTTGAA
GGAGGCGAGTGACAGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGTTGA
AGCCAGTGCCGGCGAATGATCAGTAGGAAGGCGGGAGGCTAGGTGGAAGG
GAGGGTAGTGGCGATGGTGGCGTACAGTGACTTGATGGGGAGGAGCAAAT
CAATCATGCCTTTTTTGGCATTTTTCTATTGTCTATCTGCGGTACTACAA
TTCGTTGTTATACAGTCACGGATGGAAGGAAGAAGCAGCAGTAGAGTAGG
GGATAAACCAATGAGATAAGGGAGCTGATGTAACGAGACCAGGACGCCTG
AAATTAAAGATAGAAAAACCACAAGTAGAGCCAGGAGCGATGA back to topCoding sequence (CDS) from alignment at scaffold_13:367512..368904- >mRNA_5407 ID=mRNA_5407|Name=jgi.p|Nanoce1779_2|592436|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_13:367512..368904- (Nannochloropsis oceanica)
CCGCCGCGCAGCCCATCACCTTACGGATGGCCGGCTTGACTCTTGCGCGG
GCCAGTATGATGACCATCTCCCGCGCCTCGACGCCCGCCGACTCGCACTT
CATTCTAACCGCCACGGGTCCTGACCGAGCAGGTATTGTGTTTGATATTG
CTAAGTTGGTTTTGGACAATAACGGGGATATCCAAGAATCCCGGATGATG
CGCATGGGTTGTGACTTCTCCTTAATGATGCGCGTTGCCGCCCCCAAACC
TGATGCCGATCAAATCACTCGAAAATTGAGCAAAGTCGGCGGCATGTCTG
TCATTACCCACCCGGTGACTGCCGAAAGAGCTAATCAGATCGTTCCCAAG
CCTGTGTGGAAGGCGATTTTTTCGGTTGAGGGTGTGAACCATCCTGGCTT
GGTTTACAAAGTCACTGAGTTGTTTTTTGCGCGGGGCTTGCGCGTGGAAA
AGCTACATACCGAGACGAAAATTGCGCCATTCGGGGGCACGGTCCTATTT
TTGATGGATGGGACAATCATCTCGGAGAAGGCGATTGATTTTAAAGAGTT
GAAGGAGGCGAGTGACAGCTTGAGCTCGTTTTTGGGGATCGACTTGGAGT
TGAAGCCAGTGCCGGCGAATGATCAGTAGATGCTCTCCACTTTGGCATCG
AGTTTGAAACGAGCCGCCGCGCAGCCCATCACCTTACGGATGGCCGGCTT
GACTCTTGCGCGGGCCAGTATGATGACCATCTCCCGCGCCTCGACGCCCG
CCGACTCGCACTTCATTCTAACCGCCACGGGTCCTGACCGAGCAGGTATT
GTGTTTGATATTGCTAAGTTGGTTTTGGACAATAACGGGGATATCCAAGA
ATCCCGGATGATGCGCATGGGTTGTGACTTCTCCTTAATGATGCGCGTTG
CCGCCCCCAAACCTGATGCCGATCAAATCACTCGAAAATTGAGCAAAGTC
GGCGGCATGTCTGTCATTACCCACCCGGTGACTGCCGAAAGAGCTAATCA
GATCGTTCCCAAGCCTGTGTGGAAGGCGATTTTTTCGGTTGAGGGTGTGA
ACCATCCTGGCTTGGTTTACAAAGTCACTGAGTTGTTTTTTGCGCGGGGC
TTGCGCGTGGAAAAGCTACATACCGAGACGAAAATTGCGCCATTCGGGGG
CACGGTCCTATTTTTGATGGATGGGACAATCATCTCGGAGAAGGCGATTG
ATTTTAAAGAGTTGAAGGAGGCGAGTGACAGCTTGAGCTCGTTTTTGGGG
ATCGACTTGGAGTTGAAGCCAGTGCCGGCGAATGATCAGTAGATGCTCTC
CACTTTGGCATCGAGTTTGAAACGAG back to top
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