jgi.p|Nanoce1779_2|592513, mRNA_5438 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592513
Unique Name	mRNA_5438
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1957
Alignment location	scaffold_13:424616..426572 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592599
Track	FilteredModels2
ProteinId	592513

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:424616..426572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592513	gene_5438	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592513	mRNA_5438-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5438	CDS_5438	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:424616..426572+
coding sequence from alignment at scaffold_13:424616..426572+

mRNA sequence

>mRNA_5438 ID=mRNA_5438|Name=jgi.p|Nanoce1779_2|592513|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
GGGGACGAGGGAGGGTGAGCAAGGCAGAGCTGAGTCAAGCAGCAGTAGAG
AAGGAGCACGAGGAGATCACCAAGGTGAAGAATATTCAGTTCATCGAGAT
GGGGAAGTATGAAGTAGAGACGTGGTACTATTCACCGTTTCCCTCCGAGT
ATTGTGATACGGAGCGATTATATGTGTGTGAATTTTGCCTTAAGTATATG
AAGAAGAAGAAGACCCTGCAGCGGCACAAGGCGAAGTGCGACCTGCGGCA
CCCGCCAGGGGACGAGATCTATCGAGAGGGTAACTTGAGTGTGTTTGAAG
TGGATGGCAAATTGAACAAGATTTACAGCCAGAATCTTTGTCTGCTCGCC
AAGCTCTTCTTGGACCACAAGACGCTGTACTACGACGTGGATCCCTTCCT
CTTCTATGTCCTGTGTGAGTCGGACGAGAAGGGCTATCACGTGGTGGGCT
ACTTTTCCAAGGAGAAGAATTCATGTGAGAACTATAACTTGGCCTGTATC
CTGACTTTCCCCCCCTATCAACGCGCGGGGTATGGCAAGTTTCTGATTTC
CCTGTCGTATGAGCTGACGAAGTTGGAGCATAAGGTAGGGTCGCCTGAGA
AGCCGCTGTCGGATTTGGGCAAACTAAGTTACCGCTCTTACTGGTCAATG
GTGTTGTTGAGTATCTTGAGGGAGGCACCTTCTGCCTCCATCAAGGATCT
GAGCCAACGGTCGGGTATTAAAGTGGAGGACATTATCTCAACATTGCAGT
GCCTGAATATGATCAAGCACTTCAAAGGACAGCATGTGATTGTCGTGAAT
AAGCACGAGGTAAAGGCGCATCTAGAAGGTATGAAGAAGATGCGGTTGGC
CAAGCCCGATTGCTTGTCTTGGCAGGGGCCGGGTGGAGGGGGCTTGTTGG
GCACGAAACAGCAAAAGAAGAATGCGTTGTGAGGAGATAAGGGGAGGGAT
GATGACAGCAAATGGCACCTATGTAGGGATGAAAGAAAGACCCAGAAGCA
AGCAAACAACAACATGAGCTGGTAGAAAATTACGGACAATTTCAAACAAT
GTCCGCAATTGTTTGATTCTACCCTGTACGCGTTCGAAGGGGGTGGGAGG
TCGAGAGTCGAGTGTTTGGGAACAGGAGAAAACATGCACAATTATGCACA
CAATAAGAAGAGGCAGAGTCCATAGCGCATAAGTTTATCTCAACACAGGT
GTAGGAGCTATGAAAACTAGAAGTCGCCGCGCGCTTTGGATTACTTTGAA
AATGAAAAGGGAGGGAGGGCCAAGACTCGCTCAGTTTGATCATGATGATG
GTCATGTCTCGGATTGTTTTGTCTCACTCAGCCAGAGATACTTACGCCGC
CATTGGCCAACGATACTCGACCCGCACACGTACAGACAGGCGACATGGCG
TTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTGGGCCCG
TGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGCCGCCAG
TCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACGTACAAC
TTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCAAGAGGA
TGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGGAGGGGT
TCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTCTCCCAC
CGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATATTGTCCA
CGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATCGATTGT
GTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTACCAGAGA
CCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAATCATGC
GTAGAGTATGGCATCAAAGCAAGAAAAGCAACGTGCAGATATTTTACCGA
GTTGAGA

protein sequence of jgi.p|Nanoce1779_2|592513

>mRNA_5438-protein ID=mRNA_5438-protein|Name=jgi.p|Nanoce1779_2|592513|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MGKYEVETWYYSPFPSEYCDTERLYVCEFCLKYMKKKKTLQRHKAKCDLR
HPPGDEIYREGNLSVFEVDGKLNKIYSQNLCLLAKLFLDHKTLYYDVDPF
LFYVLCESDEKGYHVVGYFSKEKNSCENYNLACILTFPPYQRAGYGKFLI
SLSYELTKLEHKVGSPEKPLSDLGKLSYRSYWSMVLLSILREAPSASIKD
LSQRSGIKVEDIISTLQCLNMIKHFKGQHVIVVNKHEVKAHLEGMKKMRL
AKPDCLSWQGPGGGGLLGTKQQKKNAL*

mRNA from alignment at scaffold_13:424616..426572+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5438 ID=mRNA_5438|Name=jgi.p|Nanoce1779_2|592513|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp|location=Sequence derived from alignment at scaffold_13:424616..426572+ (Nannochloropsis oceanica)
GGGGACGAGGGAGGGTGAGCAAGGCAGAGCTGAGTCAAGCAGCAGTAGAG
AAGGAGCACGAGGAGATCACCAAGGTGAAGAATATTCAGTTCATCGAGAT
GGGGAAGTATGAAGTAGAGACGTGGTACTATTCACCGTTTCCCTCCGAGT
ATTGTGATACGGAGCGATTATATGTGTGTGAATTTTGCCTTAAGTATATG
AAGAAGAAGAAGACCCTGCAGCGGCACAAGGCGAAGTGCGACCTGCGGCA
CCCGCCAGGGGACGAGATCTATCGAGAGGGTAACTTGAGTGTGTTTGAAG
TGGATGGCAAATTGAACAAGATTTACAGCCAGAATCTTTGTCTGCTCGCC
AAGCTCTTCTTGGACCACAAGACGCTGTACTACGACGTGGATCCCTTCCT
CTTCTATGTCCTGTGTGAGTCGGACGAGAAGGGCTATCACGTGGTGGGCT
ACTTTTCCAAGGAGAAGAATTCATGTGAGAACTATAACTTGGCCTGTATC
CTGACTTTCCCCCCCTATCAACGCGCGGGGTATGGCAAGTTTCTGATTTC
CCTGTCGTATGAGCTGACGAAGTTGGAGCATAAGGTAGGGTCGCCTGAGA
AGCCGCTGTCGGATTTGGGCAAACTAAGTTACCGCTCTTACTGGTCAATG
GTGTTGTTGAGTATCTTGAGGGAGGCACCTTCTGCCTCCATCAAGGATCT
GAGCCAACGGTCGGGTATTAAAGTGGAGGACATTATCTCAACATTGCAGT
GCCTGAATATGATCAAGCACTTCAAAGGACAGCATGTGATTGTCGTGAAT
AAGCACGAGGTAAAGGCGCATCTAGAAGGTATGAAGAAGATGCGGTTGGC
CAAGCCCGATTGCTTGTCTTGGCAGGGGCCGGGTGGAGGGGGCTTGTTGG
GCACGAAACAGCAAAAGAAGAATGCGTTGTGAGGAGATAAGGGGAGGGAT
GATGACAGCAAATGGCACCTATGTAGGGATGAAAGAAAGACCCAGAAGCA
AGCAAACAACAACATGAGCTGGTAGAAAATTACGGACAATTTCAAACAAT
GTCCGCAATTGTTTGATTCTACCCTGTACGCGTTCGAAGGGGGTGGGAGG
TCGAGAGTCGAGTGTTTGGGAACAGGAGAAAACATGCACAATTATGCACA
CAATAAGAAGAGGCAGAGTCCATAGCGCATAAGTTTATCTCAACACAGGT
GTAGGAGCTATGAAAACTAGAAGTCGCCGCGCGCTTTGGATTACTTTGAA
AATGAAAAGGGAGGGAGGGCCAAGACTCGCTCAGTTTGATCATGATGATG
GTCATGTCTCGGATTGTTTTGTCTCACTCAGCCAGAGATACTTACGCCGC
CATTGGCCAACGATACTCGACCCGCACACGTACAGACAGGCGACATGGCG
TTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTGGGCCCG
TGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGCCGCCAG
TCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACGTACAAC
TTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCAAGAGGA
TGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGGAGGGGT
TCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTCTCCCAC
CGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATATTGTCCA
CGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATCGATTGT
GTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTACCAGAGA
CCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAATCATGC
GTAGAGTATGGCATCAAAGCAAGAAAAGCAACGTGCAGATATTTTACCGA
GTTGAGA

Coding sequence (CDS) from alignment at scaffold_13:424616..426572+

>mRNA_5438 ID=mRNA_5438|Name=jgi.p|Nanoce1779_2|592513|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_13:424616..426572+ (Nannochloropsis oceanica)
ATGGGGAAGTATGAAGTAGAGACGTGGTACTATTCACCGTTTCCCTCCGA
GTATTGTGATACGGAGCGATTATATGTGTGTGAATTTTGCCTTAAGTATA
TGAAGAAGAAGAAGACCCTGCAGCGGCACAAGGCGAAGTGCGACCTGCGG
CACCCGCCAGGGGACGAGATCTATCGAGAGGGTAACTTGAGTGTGTTTGA
AGTGGATGGCAAATTGAACAAGATTTACAGCCAGAATCTTTGTCTGCTCG
CCAAGCTCTTCTTGGACCACAAGACGCTGTACTACGACGTGGATCCCTTC
CTCTTCTATGTCCTGTGTGAGTCGGACGAGAAGGGCTATCACGTGGTGGG
CTACTTTTCCAAGGAGAAGAATTCATGTGAGAACTATAACTTGGCCTGTA
TCCTGACTTTCCCCCCCTATCAACGCGCGGGGTATGGCAAGTTTCTGATT
TCCCTGTCGTATGAGCTGACGAAGTTGGAGCATAAGGTAGGGTCGCCTGA
GAAGCCGCTGTCGGATTTGGGCAAACTAAGTTACCGCTCTTACTGGTCAA
TGGTGTTGTTGAGTATCTTGAGGGAGGCACCTTCTGCCTCCATCAAGGAT
CTGAGCCAACGGTCGGGTATTAAAGTGGAGGACATTATCTCAACATTGCA
GTGCCTGAATATGATCAAGCACTTCAAAGGACAGCATGTGATTGTCGTGA
ATAAGCACGAGGTAAAGGCGCATCTAGAAGGTATGAAGAAGATGCGGTTG
GCCAAGCCCGATTGCTTGTCTTGGCAGGGGCCGGGTGGAGGGGGCTTGTT
GGGCACGAAACAGCAAAAGAAGAATGCGTTGTGA

Synonyms

Publications