jgi.p|Nanoce1779_2|592529, mRNA_5443 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592529
Unique Name	mRNA_5443
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2373
Alignment location	scaffold_13:435308..437952 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592615
Track	FilteredModels2
ProteinId	592529

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:435308..437952 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592529	gene_5443	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592529	mRNA_5443-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5443	CDS_5443	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:435308..437952+
coding sequence from alignment at scaffold_13:435308..437952+

mRNA sequence

>mRNA_5443 ID=mRNA_5443|Name=jgi.p|Nanoce1779_2|592529|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
ACAGGCGCCAGCTGGCCCGAGGAGGTACTTAGCCGGCGTCCGAGATCAGA
GGCGACTTATCGGGCCAGTGGTCACAAGCCCTCCCCTTTCTCAGCCCAAT
CCTACATCCCCCACCTGAGCAGCAGCATTACACTCCTTGCCCTTTCCCCA
ACACTTTCGACCGATGATCTCAGCCATCTTTCTGGTCAACCAAAAAGGGG
AGGTGGTAGTTAATCGGCTGTACCGCGACGATGTGAGTCGGCAAGTAGTG
GACACTTTTCGGCACAAGGTTATTGCATCCAAGGAGACCGGCTCCCAAGC
CCCGGTCAAAGTCATCGAGAACTCCACCTTCTTGTACATCCGCCACCACC
ATCTCTACCTCGTCGCCGTCACCCGCTCCAACCTGAACCCTGCTTTGGTT
TTTGAGTTTTTGTACCGAATGGTCCGCATTTTCAAGGCGTATTTCGGGGA
CCATTTCGATGAGAACGCGGTGCGAAATCATTTTACCCTCGTGTACGAGC
TGCTGGACGAGACGATGGACTTTGGATACCCACAGAACTGCGCCATTGAG
GTCTTACGGCAGTACATCAACTTAGGTACTGTCCAGGCGGAGATGGAGCA
GCAGGAACCGACCATGTTGACCTCGCAAATTACGGGTCAGATTGATTGGA
GGCGGGATGGGATTCGATATCGGAAAAATGAGGTGTATATCGACGTATTG
GAGAGCGTGAACATTCTCATGTCGGCCACGGGCAATGTCTTGCGTTCGGA
TGTCACGGGGCAGATTGTGATGAAGGCTTTGTTGTCAGGATGGCCCGAGT
GTAAGTTCGGGTTGAATGACAAGTTAATCATGGACAGGGAGGCGGCCAGC
AAGGCTGCTGCTGCTGCTGCTGCGGCTGCGGGTGGGACGGTGACACGACG
GAATGCAGGGGTGGAAATCGATGATTGTACTTTCCATCGGTGTGTGCGGT
TGGGGAAGTTTGATGCGGACCGGACGATTACCTTCATTCCGCCTGATGGG
GAGTTTGAATTAATGCGCTACAGGGTGACGGAGAATGTGAATTTGCCTTT
CAGGTTGATCCCGGCGATTCAGGAAGAGGGACGGAATAGGGTAGCGGTCA
ATGTAAAGGTCACTGCTAATTTCAGTTCGAAATTGTTTGGGCAGAATGTG
GTGATAAAAATCCCCGTGCCTCTCAACACGGCCAAAACCCAAATTAACGT
GTCCACGGGCCGCGCCAAATTTGAGCCTGAGCACCGCGCTATCGTCTGGC
GAATCAAACGCTTCCCCGGTGGCTGCGAATACATGATCACGGCAGATGTG
ACCCTCATGCCAAGCACCAGCAGCAAGGCCTGGTCAAGGCCTCCTATTCA
AGTCGAGTTTCAAGTCCCCATGTTCACATCATCGGGGGTGCATGTCAGGT
TTTTAAGAGTGTATGATAAGAGTGGATACCAGACCAATCGGTGGGTGCGC
TATATCACAAGGGCAGGGTCATTTGCGGTGCGCATTTAGAGTCGGCGGAG
CCTAGCGAGGAGGTGTGGGAAGATGAGACAGGGCAATAAAAAGAATAAGG
GTGTTCATGAAGGACGTGTATGTAAATGTACTGGGAGGAAGCTGGGAATG
AAATGGAGCAGGAATGAGGTGACGAGGTCTGGGGAGGGGAAAGGGAAAGG
ACGGGGAGCATGTGGAGTGAGATGCTTGCAAGGAAAGGATCCGAGACTGT
TTTCCCCCCTATAACAAAGAGAAAGGAATAAAGACAGTCCTTTCTTTCTC
TTTGTTTTTGGTTGTTTTTTTAATCTTTTTTGCTTATGCTCCTTTGCTGT
ATTGCAAAACGCCTCCCAGGTCTATTGGTGGCTTTCCGCGGTTGACTTTA
CATGGCTTTCCTATTCGGAAAAATGTACACAGAAAGTCGCAACGTGTACA
CCAAGCGAGTACCATTATGAGTCGAAGTATCGGACACGGGAGAGGCATTG
GCAAAGGAGGATTGAGATCAAATTAAACACGAGCTACACGATTAAAGATT
AATGCTATCCTCCCCTCCAGCGTATTCGCTAACTTGCTCCGCTTGGCTTG
CTTTGTCCTTTTGGAATGAGCCTCTATTTCTATTTTTCTTCTTGTTTTGC
AAAATAAATTTTAGTTGTATTATTGAATGTGCACATCTCTAAGGGCACCG
CTTTAGTGTCTTCTCATTCGCCGTTGCTATGTATTCTCTTAACATTAACA
GACTCCAACTTGGCATTCTACTTTTGAGTGCACATTAACTTCTTTTCTTC
TCGACCTTCACAAGCCTTTGCTACATCATAGCAATCTAAATTACCCTTTC
TCTCACCTCTTAACCAATTGTCTATAAGACATACATACAAACCCTTCCGG
ACGTCTACCTCCGCCGTCCTCCC

protein sequence of jgi.p|Nanoce1779_2|592529

>mRNA_5443-protein ID=mRNA_5443-protein|Name=jgi.p|Nanoce1779_2|592529|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKV
IENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDE
NAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT
MLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQ
IVMKALLSGWPECKFGLNDKLIMDREAASKAAAAAAAAAGGTVTRRNAGV
EIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIP
AIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGR
AKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQ
VPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI*

mRNA from alignment at scaffold_13:435308..437952+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5443 ID=mRNA_5443|Name=jgi.p|Nanoce1779_2|592529|organism=Nannochloropsis oceanica|type=mRNA|length=2645bp|location=Sequence derived from alignment at scaffold_13:435308..437952+ (Nannochloropsis oceanica)
ACAGGCGCCAGCTGGCCCGAGGAGGTACTTAGCCGGCGTCCGAGATCAGA
GGCGACTTATCGGGCCAGTGGTCACAAGCCCTCCCCTTTCTCAGCCCAAT
CCTACATCCCCCACCTGAGCAGCAGCATTACACTCCTTGCCCTTTCCCCA
ACACTTTCGACCGATGATCTCAGCCATCTTTCTGGTCAACCAAAAAGGGG
AGGTGGTAGTTAATCGGCTGTACCGCGACGATGTGAGTCGGCAAGTAGTG
GACACTTTTCGGCACAAGGTTATTGCATCCAAGGAGACCGGCTCCCAAGC
CCCGGTCAAAGTCATCGAGAACTCCACCTTCTTGTACATCCGCCACCACC
ATCTCTACCTCGTCGCCGTCACCCGCTCCAACCTGAACCCTGCTTTGGTT
TTTGAGTTTTTGTACCGAATGGTCCGCATTTTCAAGGCGTATTTCGGGGA
CCATTTCGATGAGAACGCGGTGCGAAATCATTTTACCCTCGTGTACGAGC
TGCTGGACGAGACGATGGACTTTGGATACCCACAGAACTGCGCCATTGAG
GTCTTACGGCAGTACATCAACTTAGGTACTGTCCAGGCGGAGATGGAGCA
GCAGGAACCGACCATGTTGACCTCGCAAATTACGGGTCAGATTGATTGGA
GGCGGGATGGGATTCGATATCGGAAAAATGAGGTGTATATCGACGTATTG
GAGAGCGTGAACATTCTCATGTCGGCCACGGGCAATGTCTTGCGTTCGGA
TGTCACGGGGCAGATTGTGATGAAGGCTTTGTTGTCAGGATGGCCCGAGT
GTAAGTTCGGGTTGAATGACAAGTTAATCATGGACAGGGAGGCGGCCAGC
AAGGCTGCTGCTGCTGCTGCTGCGGCTGCGGGTGGGACGGTGACACGACG
GAATGCAGGGGTGGAAATCGATGATTGTACTTTCCATCGGTGTGTGCGGT
TGGGGAAGTTTGATGCGGACCGGACGATTACCTTCATTCCGCCTGATGGG
GAGTTTGAATTAATGCGCTACAGGGTGACGGAGAATGTGAATTTGCCTTT
CAGGTTGATCCCGGCGATTCAGGAAGAGGGACGGAATAGGGTAGCGGTCA
ATGTAAAGGTCACTGCTAATTTCAGTTCGAAATTGTTTGGGCAGAATGTG
GTGATAAAAGTAAGTGACGCAGGGAGGGAGGGGAGTGAGGGAGGGAGAGA
GGGAGATGTTTCTGTCGACATTCCCATCGTCCCTCTTCACTTGAAAAACA
TTCACTTTTCACTCACCACCTCTTTGTCGCCCCTATCTCCAACTATCTAG
ATCCCCGTGCCTCTCAACACGGCCAAAACCCAAATTAACGTGTCCACGGG
CCGCGCCAAATTTGAGCCTGAGCACCGCGCTATCGTCTGGCGAATCAAAC
GCTTCCCCGGTGGCTGCGAATACATGATCACGGCAGATGTGACCCTCATG
CCAAGCACCAGCAGCAAGGCCTGGTCAAGGCCTCCTATTCAAGTCGAGTT
TCAAGTCCCCATGTTCACATCATCGGGGGTGCATGTCAGGTTTTTAAGAG
TGTATGATAAGAGTGGATGTAAGTAGGGAGGGAGGGAGGGAGGTGGGGGA
GTTTGGATCCTCTAACGCCAACACAGGATTTCAATACTTATTAAGACTTA
TTTTGATCCCTGTGTCATTTTCTTCCCTATAAATATTCCGGTGTTTCAGA
CCAGACCAATCGGTGGGTGCGCTATATCACAAGGGCAGGGTCATTTGCGG
TGCGCATTTAGAGTCGGCGGAGCCTAGCGAGGAGGTGTGGGAAGATGAGA
CAGGGCAATAAAAAGAATAAGGGTGTTCATGAAGGACGTGTATGTAAATG
TACTGGGAGGAAGCTGGGAATGAAATGGAGCAGGAATGAGGTGACGAGGT
CTGGGGAGGGGAAAGGGAAAGGACGGGGAGCATGTGGAGTGAGATGCTTG
CAAGGAAAGGATCCGAGACTGTTTTCCCCCCTATAACAAAGAGAAAGGAA
TAAAGACAGTCCTTTCTTTCTCTTTGTTTTTGGTTGTTTTTTTAATCTTT
TTTGCTTATGCTCCTTTGCTGTATTGCAAAACGCCTCCCAGGTCTATTGG
TGGCTTTCCGCGGTTGACTTTACATGGCTTTCCTATTCGGAAAAATGTAC
ACAGAAAGTCGCAACGTGTACACCAAGCGAGTACCATTATGAGTCGAAGT
ATCGGACACGGGAGAGGCATTGGCAAAGGAGGATTGAGATCAAATTAAAC
ACGAGCTACACGATTAAAGATTAATGCTATCCTCCCCTCCAGCGTATTCG
CTAACTTGCTCCGCTTGGCTTGCTTTGTCCTTTTGGAATGAGCCTCTATT
TCTATTTTTCTTCTTGTTTTGCAAAATAAATTTTAGTTGTATTATTGAAT
GTGCACATCTCTAAGGGCACCGCTTTAGTGTCTTCTCATTCGCCGTTGCT
ATGTATTCTCTTAACATTAACAGACTCCAACTTGGCATTCTACTTTTGAG
TGCACATTAACTTCTTTTCTTCTCGACCTTCACAAGCCTTTGCTACATCA
TAGCAATCTAAATTACCCTTTCTCTCACCTCTTAACCAATTGTCTATAAG
ACATACATACAAACCCTTCCGGACGTCTACCTCCGCCGTCCTCCC

Coding sequence (CDS) from alignment at scaffold_13:435308..437952+

>mRNA_5443 ID=mRNA_5443|Name=jgi.p|Nanoce1779_2|592529|organism=Nannochloropsis oceanica|type=CDS|length=3978bp|location=Sequence derived from alignment at scaffold_13:435308..437952+ (Nannochloropsis oceanica)
ATGATCTCAGCCATCTTTCTGGTCAACCAAAAAGGGGAGGTGGTAGTTAA
TCGGCTGTACCGCGACGATGTGAGTCGGCAAGTAGTGGACACTTTTCGGC
ACAAGGTTATTGCATCCAAGGAGACCGGCTCCCAAGCCCCGGTCAAAGTC
ATCGAGAACTCCACCTTCTTGTACATCCGCCACCACCATCTCTACCTCGT
CGCCGTCACCCGCTCCAACCTGAACCCTGCTTTGGTTTTTGAGTTTTTGT
ACCGAATGGTCCGCATTTTCAAGGCGTATTTCGGGGACCATTTCGATGAG
AACGCGGTGCGAAATCATTTTACCCTCGTGTACGAGCTGCTGGACGAGAC
GATGGACTTTGGATACCCACAGAACTGCGCCATTGAGGTCTTACGGCAGT
ACATCAACTTAGGTACTGTCCAGGCGGAGATGGAGCAGCAGGAACCGACC
ATGTTGACCTCGCAAATTACGGGTCAGATTGATTGGAGGCGGGATGGGAT
TCGATATCGGAAAAATGAGGTGTATATCGACGTATTGGAGAGCGTGAACA
TTCTCATGTCGGCCACGGGCAATGTCTTGCGTTCGGATGTCACGGGGCAG
ATTGTGATGAAGGCTTTGTTGTCAGGATGGCCCGAGTGTAAGTTCGGGTT
GAATGACAAGTTAATCATGGACAGGGAGGCGGCCAGCAAGGCTGCTGCTG
CTGCTGCTGCGGCTGCGGGTGGGACGGTGACACGACGGAATGCAGGGGTG
GAAATCGATGATTGTACTTTCCATCGGTGTGTGCGGTTGGGGAAGTTTGA
TGCGGACCGGACGATTACCTTCATTCCGCCTGATGGGGAGTTTGAATTAA
TGCGCTACAGGGTGACGGAGAATGTGAATTTGCCTTTCAGGTTGATCCCG
GCGATTCAGGAAGAGGGACGGAATAGGGTAGCGGTCAATGTAAAGGTCAC
TGCTAATTTCAGTTCGAAATTGTTTGGGCAGAATGTGGTGATAAAAATCC
CCGTGCCTCTCAACACGGCCAAAACCCAAATTAACGTGTCCACGGGCCGC
GCCAAATTTGAGCCTGAGCACCGCGCTATCGTCTGGCGAATCAAACGCTT
CCCCGGTGGCTGCGAATACATGATCACGGCAGATGTGACCCTCATGCCAA
GCACCAGCAGCAAGGCCTGGTCAAGGCCTCCTATTCAAGTCGAGTTTCAA
GTCCCCATGTTCACATCATCGGGGGTGCATGTCAGGTTTTTAAGAGTGTA
TGATAAGAGTGGATACCAGACCAATCGGTGGGTGCGCTATATCACAAGGG
CAGGGTCATTTGCGGTGCGCATTTAGATGATCTCAGCCATCTTTCTGGTC
AACCAAAAAGGGGAGGTGGTAGTTAATCGGCTGTACCGCGACGATGTGAG
TCGGCAAGTAGTGGACACTTTTCGGCACAAGGTTATTGCATCCAAGGAGA
CCGGCTCCCAAGCCCCGGTCAAAGTCATCGAGAACTCCACCTTCTTGTAC
ATCCGCCACCACCATCTCTACCTCGTCGCCGTCACCCGCTCCAACCTGAA
CCCTGCTTTGGTTTTTGAGTTTTTGTACCGAATGGTCCGCATTTTCAAGG
CGTATTTCGGGGACCATTTCGATGAGAACGCGGTGCGAAATCATTTTACC
CTCGTGTACGAGCTGCTGGACGAGACGATGGACTTTGGATACCCACAGAA
CTGCGCCATTGAGGTCTTACGGCAGTACATCAACTTAGGTACTGTCCAGG
CGGAGATGGAGCAGCAGGAACCGACCATGTTGACCTCGCAAATTACGGGT
CAGATTGATTGGAGGCGGGATGGGATTCGATATCGGAAAAATGAGGTGTA
TATCGACGTATTGGAGAGCGTGAACATTCTCATGTCGGCCACGGGCAATG
TCTTGCGTTCGGATGTCACGGGGCAGATTGTGATGAAGGCTTTGTTGTCA
GGATGGCCCGAGTGTAAGTTCGGGTTGAATGACAAGTTAATCATGGACAG
GGAGGCGGCCAGCAAGGCTGCTGCTGCTGCTGCTGCGGCTGCGGGTGGGA
CGGTGACACGACGGAATGCAGGGGTGGAAATCGATGATTGTACTTTCCAT
CGGTGTGTGCGGTTGGGGAAGTTTGATGCGGACCGGACGATTACCTTCAT
TCCGCCTGATGGGGAGTTTGAATTAATGCGCTACAGGGTGACGGAGAATG
TGAATTTGCCTTTCAGGTTGATCCCGGCGATTCAGGAAGAGGGACGGAAT
AGGGTAGCGGTCAATGTAAAGGTCACTGCTAATTTCAGTTCGAAATTGTT
TGGGCAGAATGTGGTGATAAAAATCCCCGTGCCTCTCAACACGGCCAAAA
CCCAAATTAACGTGTCCACGGGCCGCGCCAAATTTGAGCCTGAGCACCGC
GCTATCGTCTGGCGAATCAAACGCTTCCCCGGTGGCTGCGAATACATGAT
CACGGCAGATGTGACCCTCATGCCAAGCACCAGCAGCAAGGCCTGGTCAA
GGCCTCCTATTCAAGTCGAGTTTCAAGTCCCCATGTTCACATCATCGGGG
GTGCATGTCAGGTTTTTAAGAGTGTATGATAAGAGTGGATACCAGACCAA
TCGGTGGGTGCGCTATATCACAAGGGCAGGGTCATTTGCGGTGCGCATTT
AGATGATCTCAGCCATCTTTCTGGTCAACCAAAAAGGGGAGGTGGTAGTT
AATCGGCTGTACCGCGACGATGTGAGTCGGCAAGTAGTGGACACTTTTCG
GCACAAGGTTATTGCATCCAAGGAGACCGGCTCCCAAGCCCCGGTCAAAG
TCATCGAGAACTCCACCTTCTTGTACATCCGCCACCACCATCTCTACCTC
GTCGCCGTCACCCGCTCCAACCTGAACCCTGCTTTGGTTTTTGAGTTTTT
GTACCGAATGGTCCGCATTTTCAAGGCGTATTTCGGGGACCATTTCGATG
AGAACGCGGTGCGAAATCATTTTACCCTCGTGTACGAGCTGCTGGACGAG
ACGATGGACTTTGGATACCCACAGAACTGCGCCATTGAGGTCTTACGGCA
GTACATCAACTTAGGTACTGTCCAGGCGGAGATGGAGCAGCAGGAACCGA
CCATGTTGACCTCGCAAATTACGGGTCAGATTGATTGGAGGCGGGATGGG
ATTCGATATCGGAAAAATGAGGTGTATATCGACGTATTGGAGAGCGTGAA
CATTCTCATGTCGGCCACGGGCAATGTCTTGCGTTCGGATGTCACGGGGC
AGATTGTGATGAAGGCTTTGTTGTCAGGATGGCCCGAGTGTAAGTTCGGG
TTGAATGACAAGTTAATCATGGACAGGGAGGCGGCCAGCAAGGCTGCTGC
TGCTGCTGCTGCGGCTGCGGGTGGGACGGTGACACGACGGAATGCAGGGG
TGGAAATCGATGATTGTACTTTCCATCGGTGTGTGCGGTTGGGGAAGTTT
GATGCGGACCGGACGATTACCTTCATTCCGCCTGATGGGGAGTTTGAATT
AATGCGCTACAGGGTGACGGAGAATGTGAATTTGCCTTTCAGGTTGATCC
CGGCGATTCAGGAAGAGGGACGGAATAGGGTAGCGGTCAATGTAAAGGTC
ACTGCTAATTTCAGTTCGAAATTGTTTGGGCAGAATGTGGTGATAAAAAT
CCCCGTGCCTCTCAACACGGCCAAAACCCAAATTAACGTGTCCACGGGCC
GCGCCAAATTTGAGCCTGAGCACCGCGCTATCGTCTGGCGAATCAAACGC
TTCCCCGGTGGCTGCGAATACATGATCACGGCAGATGTGACCCTCATGCC
AAGCACCAGCAGCAAGGCCTGGTCAAGGCCTCCTATTCAAGTCGAGTTTC
AAGTCCCCATGTTCACATCATCGGGGGTGCATGTCAGGTTTTTAAGAGTG
TATGATAAGAGTGGATACCAGACCAATCGGTGGGTGCGCTATATCACAAG
GGCAGGGTCATTTGCGGTGCGCATTTAG

Synonyms

Publications