Properties
| Property Name | Value |
|---|
| TranscriptId | 631092 |
| Track | FilteredModels2 |
| ProteinId | 631006 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:256216..259273 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5365 ID=mRNA_5365|Name=jgi.p|Nanoce1779_2|631006|organism=Nannochloropsis oceanica|type=mRNA|length=2521bp
CGACAGGAGCGTGGTAGTGACCGCCGGAAAGACTATGTCAGGCACTTTAC
GTGTGCCAAGCCACGGTCGACTCACTCTAAATGATATACATACATACATT
TATGTCGATAAATGTCGATTTGAAATATTTCCCTACAGTTCTGTGATTCG
GAATCACGAGCGAGAGCGCTGATCGGCCCCCCGAGCAAAAGAGTTTGGCT
TGCTTGCCTGGACCGCCTGCCCCTCACGGCATGCAACTAATTGAAAACAA
CGAGCATTTTGAGTCAAATCCCAGGATCTTGCGCGGACGTCTTCCTCGCA
GGTGAATAGCTACCGCGGGGAGAGGATAATGAAGACCCGACGACATATTG
CCCCTTCTGGGGCAGGCGACAAACCCACCTCGCCGGCCTCTGCGTCGTCC
ACAATGACCAAGGCGTCTTTCCAAAGCCCTGATCTACTCCTTCTACTCAG
CTTCGTGGGCGTTGCTTTCATGGCCTTCATTGCCGGCATGTACCCCACCG
AAACCGAGGCCGTGGTTCAGGAGACGAAAGGCTTCGTGACAGGTCTGCTG
AGCAGGACGATCGGCGGCAGCAGCAACTACATCAGTAACAGAAAAACCTT
CCAGCGAGTGGTGGTGGACCCCAATCCTTCGCACGACATAGCCTACCCGA
CAGCACGTCTTTTGGGACCGGAAGTGACCGAGGAAGAAGTGAAGAAAGCC
CCGTTTCGACCGCACATTCTCACGGACTCTATCAACCCGCCTGTGACCCC
CCGCCATGGTGCCGGCGAGTTGGGTGTATTTCTGTATCGCAACGGCTTCT
CAGAAGACCCCCTAAACGCCGTTGTATCGCGGGAGAGACTTTGCCGCTCG
CCCGACGCCCTGGCCTCGACCCTGAGCGCCGTGGTGGACGAGGACTGGGG
CTGCAAGGAAGCGGACGGCTGCCGGGTATTCTTGCACAATGGATGGGAGA
TCTCCAATTGCGAGGAGCTAGTTGAGGATGATAAGCTCTGGCTGGTGCCT
CGGCATCGAGAGTTTATGTGGCCTACCTTCAAGCGGGGCCATCTGGTAGA
GGTGCGGCACGTGGCGTCGGGCAATGGGGAGCCCATCGTGGTTGAGACCC
TCTCCGAGTCGCCCAAGGTTTTCCGGCTTAACAACTTTTTCACCTCCGAG
GAAGCGGACGAGCTCATCGACAATGCCGTGAATCTGAACGATCCCGTCAA
TGGCCTCCACCGCTCAACCACGGGCCAGGGCATGGCCGCGCAGGAGGACA
GTCACCGCACAAGTGACAATGCGTGGGACATTGACTCACCCGCCTCCCTC
CGTCTGAAGCGCCGAATCTTCGAGCTGCTGGGTATCCGTCCTTACAAAAA
TGCCTGGGCTGACGGCTTGCAGATCCTGCGGTATAATACCACGCAGGCTT
ACAACAGTCATTTTGACTACCTGGAGACTACGCAGAAAGGCCGCCTCAAC
TCGGCCCGGCGGGGGGGCGCTAATCGATTTGCCACTGTGGTAGTGTATCT
GACGGACGTGGAGGTGGGGGGCGAGACAGTTTTTCCCGAAGGCGGTGCGC
TGGATGGGACGGATAAGAGCTACGATGAGGTCATGAGGGAAATGAAGGAG
CAAGATATCGACCTGCGTGAGATAGGCATCAAGGCAGGTTCGTGGCAGGA
GCGTTTGGTCGTCCAGTGCCGCAGCAAGCTGGCCGTGAGGCCCATGAAGG
CTCAGGCCGTTCTTTTCTATGACCAGCTGCCGCAGGGAGGGCTGGACGAT
GCCTCTCTGCATGGAGGCTGCCCGGTCCTGCAGGGCATCAAGTGGGCCGC
TAACCTGTGGGTGTGGAATGGCAATGTGCACGGCCCTGACGAAACAAGCG
ATTCCAGCGCAACGGATGGCAAAGACAGTGACGGCAGCCATCAAGTCGAA
TTTCTCAGCGTAGTGCCTGGCCATAGCTTGTACTGGCAAGACACCTTTTT
CTCAGACCTGATGGAGAATGTACCTATACGTATGAACACTTTTGAGGGCC
ATGTCTTCAACATTCACAAAGGGCGCAGTGTGGAGGAGAAAGGCGAACTT
GTGGCCACGTACACTATGAAGGCAGGGCGAAAGTCCAAGGACGTAAAGAC
GTACATATTTAGAGGTTATGCGGAAGATGAGGAGGAGGTAGAGGAGACGT
GGAGTGAGGATGGCGAGGAGGCTTTCGAAGACGAGGAGGATTTTGAAGAC
GAGGAGGAATTTGAAGACGAGGAGGAATTTGAAGACGAGGAAGAATTTGA
AGACGAGGAGAATTTTGAAGACGAGGAGGACGAGGAGGATTTCGATATGG
AATGGAGTAGGTGAGCGGGGTGACGATGATCGTTAAAAAAAAAAAGAAAA
CCCCAGAAACAATACAGTGTGTGCGGCTTCTGGGCCTGAGAAGAAACAAC
TTCAGCAAAATAAGCACGCTGGTATGTAGGTTAAGAATTTTAGTTTGGGA
TTGAAAAAAGACAAAAGGAATAAATTTCAAGAAGACAAATTCGAGGAATT
GAGGTTTGAGAATATGATAAC back to topprotein sequence of jgi.p|Nanoce1779_2|631006 >mRNA_5365-protein ID=mRNA_5365-protein|Name=jgi.p|Nanoce1779_2|631006|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp
MKTRRHIAPSGAGDKPTSPASASSTMTKASFQSPDLLLLLSFVGVAFMAF
IAGMYPTETEAVVQETKGFVTGLLSRTIGGSSNYISNRKTFQRVVVDPNP
SHDIAYPTARLLGPEVTEEEVKKAPFRPHILTDSINPPVTPRHGAGELGV
FLYRNGFSEDPLNAVVSRERLCRSPDALASTLSAVVDEDWGCKEADGCRV
FLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNG
EPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQ
GMAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQIL
RYNTTQAYNSHFDYLETTQKGRLNSARRGGANRFATVVVYLTDVEVGGET
VFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSK
LAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNV
HGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMENVPI
RMNTFEGHVFNIHKGRSVEEKGELVATYTMKAGRKSKDVKTYIFRGYAED
EEEVEETWSEDGEEAFEDEEDFEDEEEFEDEEEFEDEEEFEDEENFEDEE
DEEDFDMEWSR* back to topmRNA from alignment at scaffold_13:256216..259273- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5365 ID=mRNA_5365|Name=jgi.p|Nanoce1779_2|631006|organism=Nannochloropsis oceanica|type=mRNA|length=3058bp|location=Sequence derived from alignment at scaffold_13:256216..259273- (Nannochloropsis oceanica)
CGACAGGAGCGTGGTAGTGACCGCCGGAAAGACTATGTCAGGCACTTTAC
GTGTGCCAAGCCACGGTCGACTCACTCTAAATGATATACATACATACATT
TATGTCGATAAATGTCGATTTGAAATATTTCCCTACAGTTCTGTGATTCG
GAATCACGAGCGAGAGCGCTGATCGGCCCCCCGAGCAAAAGAGTTTGGCT
TGCTTGCCTGGACCGCCTGCCCCTCACGGCATGCAACTAATTGAAAACAA
CGAGCATTTTGAGGTATGAGCATTCCCGGGAGACAGTGTCGTGCTTGTAG
CCAAATTTTTCTCCAAATCGCCATCTTTTCAAATGTATGGGCTTCTTTCT
TCACACCTTCGTCAACCCTTCGGGTGAGCTGCATCCAAGCAAGAACACAT
GGTTCTGTCCCGGAGCACCGAACCACACTTCACTGTCCGACAATTGAACT
CACAACTTCCATTGCACCTCTTTCTACACAGTCAAATCCCAGGATCTTGC
GCGGACGTCTTCCTCGCAGGTGAATAGCTACCGCGGGGAGAGGATAATGA
AGACCCGACGACATATTGCCCCTTCTGGGGCAGGCGACAAACCCACCTCG
CCGGCCTCTGCGTCGTCCACAATGACCAAGGCGTCTTTCCAAAGCCCTGA
TCTACTCCTTCTACTCAGCTTCGTGGGCGTTGCTTTCATGGCCTTCATTG
GTACGTATCAAACACGCGTTTGTGTCCTCCCATGCCTTTGAATTCGACGT
TCACATGGTGCATTTTGATGCCTATGCGAGGTCGTGCCGATACGATACCG
ATCAGAGCCTCATCATGTCTTATCAATGTAAACGGATTTGTCCGCGATTT
CTCCCTGGCTCAAGCATTTCTTTCCTTTTTAACTTAAAGAAATTCTTAAT
GCCGCTCCAGCCATATCAGTTCAGACCATCGGCAAGAGACTACCCACCCC
CCGCAAATGGTAACACCCCTTATAACAATCACCCACTCTCCCCAACCTCT
TTCCTATCTCCACACACAGCCGGCATGTACCCCACCGAAACCGAGGCCGT
GGTTCAGGAGACGAAAGGCTTCGTGACAGGTCTGCTGAGCAGGACGATCG
GCGGCAGCAGCAACTACATCAGTAACAGAAAAACCTTCCAGCGAGTGGTG
GTGGACCCCAATCCTTCGCACGACATAGCCTACCCGACAGCACGTCTTTT
GGGACCGGAAGTGACCGAGGAAGAAGTGAAGAAAGCCCCGTTTCGACCGC
ACATTCTCACGGACTCTATCAACCCGCCTGTGACCCCCCGCCATGGTGCC
GGCGAGTTGGGTGTATTTCTGTATCGCAACGGCTTCTCAGAAGACCCCCT
AAACGCCGTTGTATCGCGGGAGAGACTTTGCCGCTCGCCCGACGCCCTGG
CCTCGACCCTGAGCGCCGTGGTGGACGAGGACTGGGGCTGCAAGGAAGCG
GACGGCTGCCGGGTATTCTTGCACAATGGATGGGAGATCTCCAATTGCGA
GGAGCTAGTTGAGGATGATAAGCTCTGGCTGGTGCCTCGGCATCGAGAGT
TTATGTGGCCTACCTTCAAGCGGGGCCATCTGGTAGAGGTGCGGCACGTG
GCGTCGGGCAATGGGGAGCCCATCGTGGTTGAGACCCTCTCCGAGTCGCC
CAAGGTTTTCCGGCTTAACAACTTTTTCACCTCCGAGGAAGCGGACGAGC
TCATCGACAATGCCGTGAATCTGAACGATCCCGTCAATGGCCTCCACCGC
TCAACCACGGGCCAGGGCATGGCCGCGCAGGAGGACAGTCACCGCACAAG
TGACAATGCGTGGGACATTGACTCACCCGCCTCCCTCCGTCTGAAGCGCC
GAATCTTCGAGCTGCTGGGTATCCGTCCTTACAAAAATGCCTGGGCTGAC
GGCTTGCAGATCCTGCGGTATAATACCACGCAGGCTTACAACAGTCATTT
TGACTACCTGGAGACTACGCAGAAAGGCCGCCTCAACTCGGCCCGGCGGG
GGGGCGCTAATCGATTTGCCACTGTGGTAGTGTATCTGACGGACGTGGAG
GTGGGGGGCGAGACAGTTTTTCCCGAAGGCGGTGCGCTGGATGGGACGGA
TAAGAGCTACGATGAGGTCATGAGGGAAATGAAGGAGCAAGATATCGACC
TGCGTGAGATAGGCATCAAGGCAGGTTCGTGGCAGGAGCGTTTGGTCGTC
CAGTGCCGCAGCAAGCTGGCCGTGAGGCCCATGAAGGCTCAGGCCGTTCT
TTTCTATGACCAGCTGCCGCAGGGAGGGCTGGACGATGCCTCTCTGCATG
GAGGCTGCCCGGTCCTGCAGGGCATCAAGTGGGCCGCTAACCTGTGGGTG
TGGAATGGCAATGTGCACGGCCCTGACGAAACAAGCGATTCCAGCGCAAC
GGATGGCAAAGACAGTGACGGCAGCCATCAAGTCGAATTTCTCAGCGTAG
TGCCTGGCCATAGCTTGTACTGGCAAGACACCTTTTTCTCAGACCTGATG
GAGAATGTACCTATACGTATGAACACTTTTGAGGGCCATGTCTTCAACAT
TCACAAAGGGCGCAGTGTGGAGGAGAAAGGCGAACTTGTGGCCACGTACA
CTATGAAGGCAGGGCGAAAGTCCAAGGACGTAAAGACGTACATATTTAGA
GGTTATGCGGAAGATGAGGAGGAGGTAGAGGAGACGTGGAGTGAGGATGG
CGAGGAGGCTTTCGAAGACGAGGAGGATTTTGAAGACGAGGAGGAATTTG
AAGACGAGGAGGAATTTGAAGACGAGGAAGAATTTGAAGACGAGGAGAAT
TTTGAAGACGAGGAGGACGAGGAGGATTTCGATATGGAATGGAGTAGGTG
AGCGGGGTGACGATGATCGTTAAAAAAAAAAAGAAAACCCCAGAAACAAT
ACAGTGTGTGCGGCTTCTGGGCCTGAGAAGAAACAACTTCAGCAAAATAA
GCACGCTGGTATGTAGGTTAAGAATTTTAGTTTGGGATTGAAAAAAGACA
AAAGGAATAAATTTCAAGAAGACAAATTCGAGGAATTGAGGTTTGAGAAT
ATGATAAC back to topCoding sequence (CDS) from alignment at scaffold_13:256216..259273- >mRNA_5365 ID=mRNA_5365|Name=jgi.p|Nanoce1779_2|631006|organism=Nannochloropsis oceanica|type=CDS|length=3972bp|location=Sequence derived from alignment at scaffold_13:256216..259273- (Nannochloropsis oceanica)
CCGGCATGTACCCCACCGAAACCGAGGCCGTGGTTCAGGAGACGAAAGGC
TTCGTGACAGGTCTGCTGAGCAGGACGATCGGCGGCAGCAGCAACTACAT
CAGTAACAGAAAAACCTTCCAGCGAGTGGTGGTGGACCCCAATCCTTCGC
ACGACATAGCCTACCCGACAGCACGTCTTTTGGGACCGGAAGTGACCGAG
GAAGAAGTGAAGAAAGCCCCGTTTCGACCGCACATTCTCACGGACTCTAT
CAACCCGCCTGTGACCCCCCGCCATGGTGCCGGCGAGTTGGGTGTATTTC
TGTATCGCAACGGCTTCTCAGAAGACCCCCTAAACGCCGTTGTATCGCGG
GAGAGACTTTGCCGCTCGCCCGACGCCCTGGCCTCGACCCTGAGCGCCGT
GGTGGACGAGGACTGGGGCTGCAAGGAAGCGGACGGCTGCCGGGTATTCT
TGCACAATGGATGGGAGATCTCCAATTGCGAGGAGCTAGTTGAGGATGAT
AAGCTCTGGCTGGTGCCTCGGCATCGAGAGTTTATGTGGCCTACCTTCAA
GCGGGGCCATCTGGTAGAGGTGCGGCACGTGGCGTCGGGCAATGGGGAGC
CCATCGTGGTTGAGACCCTCTCCGAGTCGCCCAAGGTTTTCCGGCTTAAC
AACTTTTTCACCTCCGAGGAAGCGGACGAGCTCATCGACAATGCCGTGAA
TCTGAACGATCCCGTCAATGGCCTCCACCGCTCAACCACGGGCCAGGGCA
TGGCCGCGCAGGAGGACAGTCACCGCACAAGTGACAATGCGTGGGACATT
GACTCACCCGCCTCCCTCCGTCTGAAGCGCCGAATCTTCGAGCTGCTGGG
TATCCGTCCTTACAAAAATGCCTGGGCTGACGGCTTGCAGATCCTGCGGT
ATAATACCACGCAGGCTTACAACAGTCATTTTGACTACCTGGAGACTACG
CAGAAAGGCCGCCTCAACTCGGCCCGGCGGGGGGGCGCTAATCGATTTGC
CACTGTGGTAGTGTATCTGACGGACGTGGAGGTGGGGGGCGAGACAGTTT
TTCCCGAAGGCGGTGCGCTGGATGGGACGGATAAGAGCTACGATGAGGTC
ATGAGGGAAATGAAGGAGCAAGATATCGACCTGCGTGAGATAGGCATCAA
GGCAGGTTCGTGGCAGGAGCGTTTGGTCGTCCAGTGCCGCAGCAAGCTGG
CCGTGAGGCCCATGAAGGCTCAGGCCGTTCTTTTCTATGACCAGCTGCCG
CAGGGAGGGCTGGACGATGCCTCTCTGCATGGAGGCTGCCCGGTCCTGCA
GGGCATCAAGTGGGCCGCTAACCTGTGGGTGTGGAATGGCAATGTGCACG
GCCCTGACGAAACAAGCGATTCCAGCGCAACGGATGGCAAAGACAGTGAC
GGCAGCCATCAAGTCGAATTTCTCAGCGTAGTGCCTGGCCATAGCTTGTA
CTGGCAAGACACCTTTTTCTCAGACCTGATGGAGAATGTACCTATACGTA
TGAACACTTTTGAGGGCCATGTCTTCAACATTCACAAAGGGCGCAGTGTG
GAGGAGAAAGGCGAACTTGTGGCCACGTACACTATGAAGGCAGGGCGAAA
GTCCAAGGACGTAAAGACGTACATATTTAGAGGTTATGCGGAAGATGAGG
AGGAGGTAGAGGAGACGTGGAGTGAGGATGGCGAGGAGGCTTTCGAAGAC
GAGGAGGATTTTGAAGACGAGGAGGAATTTGAAGACGAGGAGGAATTTGA
AGACGAGGAAGAATTTGAAGACGAGGAGAATTTTGAAGACGAGGAGGACG
AGGAGGATTTCGATATGGAATGGAGTAGGTGAATGAAGACCCGACGACAT
ATTGCCCCTTCTGGGGCAGGCGACAAACCCACCTCGCCGGCCTCTGCGTC
GTCCACAATGACCAAGGCGTCTTTCCAAAGCCCTGATCTACTCCTTCTAC
TCAGCTTCGTGGGCGTTGCTTTCATGGCCTTCATTGCCGGCATGTACCCC
ACCGAAACCGAGGCCGTGGTTCAGGAGACGAAAGGCTTCGTGACAGGTCT
GCTGAGCAGGACGATCGGCGGCAGCAGCAACTACATCAGTAACAGAAAAA
CCTTCCAGCGAGTGGTGGTGGACCCCAATCCTTCGCACGACATAGCCTAC
CCGACAGCACGTCTTTTGGGACCGGAAGTGACCGAGGAAGAAGTGAAGAA
AGCCCCGTTTCGACCGCACATTCTCACGGACTCTATCAACCCGCCTGTGA
CCCCCCGCCATGGTGCCGGCGAGTTGGGTGTATTTCTGTATCGCAACGGC
TTCTCAGAAGACCCCCTAAACGCCGTTGTATCGCGGGAGAGACTTTGCCG
CTCGCCCGACGCCCTGGCCTCGACCCTGAGCGCCGTGGTGGACGAGGACT
GGGGCTGCAAGGAAGCGGACGGCTGCCGGGTATTCTTGCACAATGGATGG
GAGATCTCCAATTGCGAGGAGCTAGTTGAGGATGATAAGCTCTGGCTGGT
GCCTCGGCATCGAGAGTTTATGTGGCCTACCTTCAAGCGGGGCCATCTGG
TAGAGGTGCGGCACGTGGCGTCGGGCAATGGGGAGCCCATCGTGGTTGAG
ACCCTCTCCGAGTCGCCCAAGGTTTTCCGGCTTAACAACTTTTTCACCTC
CGAGGAAGCGGACGAGCTCATCGACAATGCCGTGAATCTGAACGATCCCG
TCAATGGCCTCCACCGCTCAACCACGGGCCAGGGCATGGCCGCGCAGGAG
GACAGTCACCGCACAAGTGACAATGCGTGGGACATTGACTCACCCGCCTC
CCTCCGTCTGAAGCGCCGAATCTTCGAGCTGCTGGGTATCCGTCCTTACA
AAAATGCCTGGGCTGACGGCTTGCAGATCCTGCGGTATAATACCACGCAG
GCTTACAACAGTCATTTTGACTACCTGGAGACTACGCAGAAAGGCCGCCT
CAACTCGGCCCGGCGGGGGGGCGCTAATCGATTTGCCACTGTGGTAGTGT
ATCTGACGGACGTGGAGGTGGGGGGCGAGACAGTTTTTCCCGAAGGCGGT
GCGCTGGATGGGACGGATAAGAGCTACGATGAGGTCATGAGGGAAATGAA
GGAGCAAGATATCGACCTGCGTGAGATAGGCATCAAGGCAGGTTCGTGGC
AGGAGCGTTTGGTCGTCCAGTGCCGCAGCAAGCTGGCCGTGAGGCCCATG
AAGGCTCAGGCCGTTCTTTTCTATGACCAGCTGCCGCAGGGAGGGCTGGA
CGATGCCTCTCTGCATGGAGGCTGCCCGGTCCTGCAGGGCATCAAGTGGG
CCGCTAACCTGTGGGTGTGGAATGGCAATGTGCACGGCCCTGACGAAACA
AGCGATTCCAGCGCAACGGATGGCAAAGACAGTGACGGCAGCCATCAAGT
CGAATTTCTCAGCGTAGTGCCTGGCCATAGCTTGTACTGGCAAGACACCT
TTTTCTCAGACCTGATGGAGAATGTACCTATACGTATGAACACTTTTGAG
GGCCATGTCTTCAACATTCACAAAGGGCGCAGTGTGGAGGAGAAAGGCGA
ACTTGTGGCCACGTACACTATGAAGGCAGGGCGAAAGTCCAAGGACGTAA
AGACGTACATATTTAGAGGTTATGCGGAAGATGAGGAGGAGGTAGAGGAG
ACGTGGAGTGAGGATGGCGAGGAGGCTTTCGAAGACGAGGAGGATTTTGA
AGACGAGGAGGAATTTGAAGACGAGGAGGAATTTGAAGACGAGGAAGAAT
TTGAAGACGAGGAGAATTTTGAAGACGAGGAGGACGAGGAGGATTTCGAT
ATGGAATGGAGTAGGTGAATGAAGACCCGACGACATATTGCCCCTTCTGG
GGCAGGCGACAAACCCACCTCGCCGGCCTCTGCGTCGTCCACAATGACCA
AGGCGTCTTTCCAAAGCCCTGATCTACTCCTTCTACTCAGCTTCGTGGGC
GTTGCTTTCATGGCCTTCATTG back to top
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