jgi.p|Nanoce1779_2|671646, gene_5960 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671646
Unique Namegene_5960
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:180750..189079 -

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Properties
Property NameValue
TranscriptId671732
ProteinId671646
Product nameputative chromatin remodelling complex ATPase chain
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:180750..189079 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00840NO16G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671646mRNA_5960-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671646mRNA_5960Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|671646

>mRNA_5960-protein ID=mRNA_5960-protein|Name=jgi.p|Nanoce1779_2|671646|organism=Nannochloropsis oceanica|type=polypeptide|length=1604bp
MHPHTVHTPLLPTHPPSPSLTETHEHATTQKQKGCQAGSLSIRSKNSKSV
HSGISVPNHHHSNTTGDQNSTMSALAPPADAGAMAASSPRGSDGGGGGGV
EPKAIKAATSAFLFYQRDNMSRIRQELEAKGEASGLGDVQKVVASEWRGL
EDDVRAEYDGKAAADRARYEAECAERDRILEEESARRRKEREDVICDSRM
RAREEREEKVVKIRTKRELTAEEIEERDTLKAERAARQAVIDEEHHRLAD
ERAKQAEARLQFLLRQSDIFTHFGLTAGKMQMEKEGEKGAGGKGASSSGA
GGAKHRRAAADDEDEDEGGPEAHFLLQQPPSIKSGQLRAYQLEGLNWMIR
LQDNGINGILADEMGLGKTLQSISVLAYNAEFLNITGPHLVLVPKSTLSN
WCNEFRRWCPSLRILRFHGSKDERAELVERRLCPGVERDWDCLITTYEIC
NLEKNALSKFAWQYLIIDEAHRLKNEASQFSQTVRMLRTAHRLLITGTPL
QNNLHELWALLNFLLPDVFSSSDQFDEWFNLEIDDAEQKQRLITQLHKIL
RPFMLRRLKADVEKSLPKKTETLVFCEMMPIQRDTYKKILERDLSVIAGS
ETAGRTAVLNLVMQLRKACNHPYLFTGVEDRNLDPLGDHVIQNCGKMFVL
DKLLKKLKEKGHRVLVFCQMTRMLDILEDFMYMRGHTYCRIDGNTSYEER
ENLIDTYNAPDSSKFAFLLSTRAGGLGINLQTADTVILYDSDWNPQADLQ
AQDRAHRIGQKRPVNIYRLVTQGTIEEKIVERAQKKLKLDAMVVQQGRLT
DKDKMSKDELLEALRFGADVIFRSKDNNITDEDIDLILERGRKKTQEIEE
KLQAADKGDLLDFRMDGGMSVQVFEGQDYSKKPIKEGFSGLPQLHMFDIG
KRERRPTQSNLNEGALLKRMVLEGKGSNRGKHMKLPKQLRLPRVDDVWTF
FDRDRLRELQKMEEDRYKDLKNNEALPTDPSEWELLTPSLAEEKARLLEE
GFGDWSKNHFNLFCRASAKYGRHSHEKIAVEVGKTEEEVKRYAEVFWRKG
EQALSDGEWKKVVTAVEKGEKKLEEISRLTKATQELLGRFKNPWEELTFQ
YIGQQGKERIYSTEEDRYLLCFTNHYGYGNWEDVRMAIRRCDRFRFDYFL
RSCTADMLGKRCEQLMRAAEKENTEYEKKRSAVEEGRRREKDDRASEDTR
REKDEEERKARITELDAKLGEEEGRLQEFADAKRTAEMRLQMLKGLKVSS
NSVNGGMDGGGSSSSMSGGGGGGSGKGTLPKTVPEDLVPELALMLVRGGA
DGVTKIVSEFYGRYAKDGVSKRQTEMKINEIAVKEKREEDARPVWHLREG
FTHLVKGRLSSPKGEKKRKREGEGGGEGELREPKKARNAVTLYLVDHKEA
VKRDLGDEATNDNIKSRIKMLWKAENQHVKDRYSARAKEEEARYDREMNL
YQTLLAQQQQKKAAAAAAAAAAATGGAAASKPSMAVGMEGGGGGGGRGGE
EDEYHIPKRSPVTVPPAVSPSQQEQLQQQQQQLEQQELNQQQQQQHQHQQ
LNQQQWQQLQQQQLLMQKQQQLQQLHLQQQQQQQGGGEEVAPAASVDSSA
MES*
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Synonyms
Publications