jgi.p|Nanoce1779_2|105078, mRNA_7149 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|105078
Unique NamemRNA_7149
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_16:401713..402807 -

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Properties
Property NameValue
TranscriptId105164
TrackFilteredModels2
ProteinId105078
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:401713..402807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105078gene_7149Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105078mRNA_7149-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7149CDS_7149Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7149 ID=mRNA_7149|Name=jgi.p|Nanoce1779_2|105078|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
CTCCCTCGTGTCGTTGGTTGGTCTTGCCGCCAACGCTTCTGCCGGCCCAC
AAGAACTTAAGGTAATTTCGCTTGCCCCGCCACCCAACTACTAAAAGCCA
CTCTACGGAATACGAATCATCAAAAGTTTCTCGTCCATGTCTGCCTCCTC
GTCATCGGCCCAAGGCCAAGCCCTTTCACCGCCTTCCGACGAAGAGGCCA
CTAACGGCCCGGGCGCCTCGCTGCACGGCGTGAGCGCGCATGGCCTGGTA
AGTCTGGAGCGGGCCGAGCACATCTTACAACGGGTGATTGACACAGTCAA
TGACCAAGGCCTACAAATTTCCAGCCTGTACCTGCTGTTACAGACGCTGG
TGGGCACTGAGACCAACCCCTTGCCCCGTAGCCTCTTGAATGTAGAGGGC
AATTTTTCCCGCCTCAACCATCGGCTAGATCGAGTCGAGAAAGCAATTCA
TGTCCCGGGGGTGGCTCCCAGCGTGCCTATCGGCGAAGTCGTGAGTACCA
ACGGAGTAGAACTCAATCATGCCCTGGATGTGCTGCACAAAAAGGCGAAC
CAAGCAGACGTAGAAGCGCGCCAGCACAAGTTAGAGGAGGAAGTGGCCGA
GGTTTATGCGTGGGCAGGGGCTCGTGAGCTGGTCGAGCGATTGGAGGAAT
CGAATCGGGCGACACGTACGCAGGTGCAAGCTATGGAAGCAGCGTTGGGC
TGTAAGGTGGACAAGGTGGAGATGGCGGGGATGGAGGCGACGTTGAATCG
TATCAAGATATATAATAGTCGAATGGAGGGGTTGGAGCAGGGCCAAGCCC
AGGACATGGCGCGTGTTCGGGCGGAGGTACAACTGCTGCAGGAACGACGC
ATTGCGGCGGATCAGCAGTTGGAGGTGACGAGGAAGGCGCTGGGAGCTCT
GGAGGAAAAGCATGGGGCGTGGAAGCGGGAGACATTGGAATTGATGAAAG
AGGTTGGTGATGGATAGTGGAGGGGAATGCGGAGGAGTAGAAGGAGGGGA
GAAGAAAATGGAAAAGGAAGAGGAGGAATAGGAACCGGACGACGATAAAA
TGGACCACGATGAGGAGGAGGAGATAGATGGGTGGAAAGGCCAGC
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protein sequence of jgi.p|Nanoce1779_2|105078

>mRNA_7149-protein ID=mRNA_7149-protein|Name=jgi.p|Nanoce1779_2|105078|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MSASSSSAQGQALSPPSDEEATNGPGASLHGVSAHGLVSLERAEHILQRV
IDTVNDQGLQISSLYLLLQTLVGTETNPLPRSLLNVEGNFSRLNHRLDRV
EKAIHVPGVAPSVPIGEVVSTNGVELNHALDVLHKKANQADVEARQHKLE
EEVAEVYAWAGARELVERLEESNRATRTQVQAMEAALGCKVDKVEMAGME
ATLNRIKIYNSRMEGLEQGQAQDMARVRAEVQLLQERRIAADQQLEVTRK
ALGALEEKHGAWKRETLELMKEVGDG*
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mRNA from alignment at scaffold_16:401713..402807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7149 ID=mRNA_7149|Name=jgi.p|Nanoce1779_2|105078|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at scaffold_16:401713..402807- (Nannochloropsis oceanica)
CTCCCTCGTGTCGTTGGTTGGTCTTGCCGCCAACGCTTCTGCCGGCCCAC
AAGAACTTAAGGTAATTTCGCTTGCCCCGCCACCCAACTACTAAAAGCCA
CTCTACGGAATACGAATCATCAAAAGTTTCTCGTCCATGTCTGCCTCCTC
GTCATCGGCCCAAGGCCAAGCCCTTTCACCGCCTTCCGACGAAGAGGCCA
CTAACGGCCCGGGCGCCTCGCTGCACGGCGTGAGCGCGCATGGCCTGGTA
AGTCTGGAGCGGGCCGAGCACATCTTACAACGGGTGATTGACACAGTCAA
TGACCAAGGCCTACAAATTTCCAGCCTGTACCTGCTGTTACAGACGCTGG
TGGGCACTGAGACCAACCCCTTGCCCCGTAGCCTCTTGAATGTAGAGGGC
AATTTTTCCCGCCTCAACCATCGGCTAGATCGAGTCGAGAAAGCAATTCA
TGTCCCGGGGGTGGCTCCCAGCGTGCCTATCGGCGAAGTCGTGAGTACCA
ACGGAGTAGAACTCAATCATGCCCTGGATGTGCTGCACAAAAAGGCGAAC
CAAGCAGACGTAGAAGCGCGCCAGCACAAGTTAGAGGAGGAAGTGGCCGA
GGTTTATGCGTGGGCAGGGGCTCGTGAGCTGGTCGAGCGATTGGAGGAAT
CGAATCGGGCGACACGTACGCAGGTGCAAGCTATGGAAGCAGCGTTGGGC
TGTAAGGTGGACAAGGTGGAGATGGCGGGGATGGAGGCGACGTTGAATCG
TATCAAGATATATAATAGTCGAATGGAGGGGTTGGAGCAGGGCCAAGCCC
AGGACATGGCGCGTGTTCGGGCGGAGGTACAACTGCTGCAGGAACGACGC
ATTGCGGCGGATCAGCAGTTGGAGGTGACGAGGAAGGCGCTGGGAGCTCT
GGAGGAAAAGCATGGGGCGTGGAAGCGGGAGACATTGGAATTGATGAAAG
AGGTTGGTGATGGATAGTGGAGGGGAATGCGGAGGAGTAGAAGGAGGGGA
GAAGAAAATGGAAAAGGAAGAGGAGGAATAGGAACCGGACGACGATAAAA
TGGACCACGATGAGGAGGAGGAGATAGATGGGTGGAAAGGCCAGC
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Coding sequence (CDS) from alignment at scaffold_16:401713..402807-

>mRNA_7149 ID=mRNA_7149|Name=jgi.p|Nanoce1779_2|105078|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_16:401713..402807- (Nannochloropsis oceanica)
ATGTCTGCCTCCTCGTCATCGGCCCAAGGCCAAGCCCTTTCACCGCCTTC
CGACGAAGAGGCCACTAACGGCCCGGGCGCCTCGCTGCACGGCGTGAGCG
CGCATGGCCTGGTAAGTCTGGAGCGGGCCGAGCACATCTTACAACGGGTG
ATTGACACAGTCAATGACCAAGGCCTACAAATTTCCAGCCTGTACCTGCT
GTTACAGACGCTGGTGGGCACTGAGACCAACCCCTTGCCCCGTAGCCTCT
TGAATGTAGAGGGCAATTTTTCCCGCCTCAACCATCGGCTAGATCGAGTC
GAGAAAGCAATTCATGTCCCGGGGGTGGCTCCCAGCGTGCCTATCGGCGA
AGTCGTGAGTACCAACGGAGTAGAACTCAATCATGCCCTGGATGTGCTGC
ACAAAAAGGCGAACCAAGCAGACGTAGAAGCGCGCCAGCACAAGTTAGAG
GAGGAAGTGGCCGAGGTTTATGCGTGGGCAGGGGCTCGTGAGCTGGTCGA
GCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGCAAGCTATGG
AAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCGGGGATGGAG
GCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGAGGGGTTGGA
GCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGGTACAACTGC
TGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTGACGAGGAAG
GCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCGGGAGACATT
GGAATTGATGAAAGAGGTTGGTGATGGATAG
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Synonyms
Publications