jgi.p|Nanoce1779_2|596161, mRNA_7235 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596161
Unique NamemRNA_7235
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1116
Alignment locationscaffold_16:665379..666977 -

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Properties
Property NameValue
TranscriptId596247
TrackFilteredModels2
ProteinId596161
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:665379..666977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596161gene_7235Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596161mRNA_7235-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7235CDS_7235Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7235 ID=mRNA_7235|Name=jgi.p|Nanoce1779_2|596161|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
GACTCGTCTACCTATCATCTACAAGCATCTATACACGCTGTCTCTGTCCA
GCCCTCTCCCCTCTTTCCCTCCCTTCACCACGTCCCTTCTTCTTCCCCCC
TCATCACACCCGTCTTTACAAAACGTGGTCAAGGTCCCTGACTCCTGCCA
GCTCTCCTTTCCCCATTCCCTCCTTCCTTCCCTCATGCCTTCTTCCAAGC
GAAAATCCCTCGGGCCCCATCCAGCTCTTGTGGTCTAATCTCTTCATGTG
GCAACGCCTGCACCTGCACGCGATCCATCACAATCGTCCCTCCCTCTCCC
ATGGCCTCCAGCTCAAATTGCGCCATTTGGGAGGAGGACCCCAGCACACC
CACGATGCTCTTGAAGCCTGGACCGACCACGCGCCATTCAGGTTCCTGCG
TGGGGTTGTGAGTCGACCCCCAGTCGCTGCTGTCGCTGGTGTGCAGGACG
AAACGGCACCGCACGTAGAGCTCTTGTTCGACCAAGCCATTCTCGAGGAC
AACGAGGGAGGCGCCAGAGCACTCGTACTGGAAGAGGGTCACACCAGCCA
GCCCTCCAACGTCCCTCGTAACCACAGGAGGGGCAAAGAACTTGGAGTCT
CGGAGGAGGGCTCTGTCAGACAGGGCGCGCAGGAGCTGATCGACGACAAG
GGCACTCGGCGAGTGTGTGTGTTTGTGGGTGGGGAAGGGAGCCTGAAGGG
GACGGATGGAGGACGAGGGGGAGGGAGGGAAGGAGGGAACGGGGGTGAGA
CGACCGGAATATTGTCCATAGTCTTCTCCTACCTTTCTTTCCCCCTGTCC
CTCCTCGCCTCCTTCTCTCCCTCCATCCCTCACATCCCGCAACTCCACGG
GTGCTGCGGAAAAGACTCGGAGGGTGAAGGGAGCGGTCTCCAGTGCCTTC
TTCCTGAGGGCAGCTCGGCTGCCCCGGATGGCAGGGTCGGAGAGCAGGGC
CCAACGGTTGAGAGAGAAGGGGAGGAGGAGGTAGTGGGAGGGGGTGGAGG
CTAGGCAGGGGCGGAGGGAGGGGTATGTGTGAGCGAGACACGTGCTGACG
ACATGCAGAAACAGGAATGAGCCACCCCTCCCTCCCTTACTCCCTCCCTC
CCTCCCTCCCTCGTTA
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protein sequence of jgi.p|Nanoce1779_2|596161

>mRNA_7235-protein ID=mRNA_7235-protein|Name=jgi.p|Nanoce1779_2|596161|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MWQRLHLHAIHHNRPSLSHGLQLKLRHLGGGPQHTHDALEAWTDHAPFRF
LRGVVSRPPVAAVAGVQDETAPHVELLFDQAILEDNEGGARALVLEEGHT
SQPSNVPRNHRRGKELGVSEEGSVRQGAQELIDDKGTRRVCVFVGGEGSL
KGTDGGRGGGREGGNGGETTGILSIVFSYLSFPLSLLASFSPSIPHIPQL
HGCCGKDSEGEGSGLQCLLPEGSSAAPDGRVGEQGPTVEREGEEEVVGGG
GG*
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mRNA from alignment at scaffold_16:665379..666977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7235 ID=mRNA_7235|Name=jgi.p|Nanoce1779_2|596161|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_16:665379..666977- (Nannochloropsis oceanica)
GACTCGTCTACCTATCATCTACAAGCATCTATACACGCTGTCTCTGTCCA
GCCCTCTCCCCTCTTTCCCTCCCTTCACCACGTCCCTTCTTCTTCCCCCC
TCATCACACCCGTCTTTACAAAACGTGGTCAAGGTCCCTGACTCCTGCCA
GCTCTCCTTTCCCCATTCCCTCCTTCCTTCCCTCATGCCTTCTTCCAAGC
GAAAATCCCTCGGGCCCCATCCAGCTCTTGTGGTCTAATCTCTTCATGTG
GCAACGCCTGCACCTGCACGCGATCCATCACAATCGTCCCTCCCTCTCCC
ATGGCCTCCAGCTCAAATTGCGCCATTTGGGAGGAGGACCCCAGCACACC
CACGATGCTCTTGAAGCCTGGACCGACCACGCGCCATTCTGAGGGAGGGG
ATGTGGGAGAGGGAGGGAGGAAAGGAGGGAGGGAATGGAAGTGGACTGGT
TGGTGGTGGGGTCGTGGAGGGCTCTCGATATTTTGCTACAAGAGCGCAGC
GGAGCTGACCACCCCATTTTTATCGTCACTCCTGTTCCATCTCCTTCCAT
TATTCCCTCCCTTCTTCGCTCACTTCCTTTCTCCCTACCAGGTTCCTGCG
TGGGGTTGTGAGTCGACCCCCAGTCGCTGCTGTCGCTGGTGTGCAGGACG
AAACGGCACCGCACGTAGAGCTCTTGTTCGACCAAGCCATTCTCGAGGAC
AACGAGGGAGGCGCCAGAGCACTCGTACTGGAAGAGGGTCACACCAGCCA
GCCTGTGGTGAGTACACAGATGCGTCCAGAGAGGAGGAAGGAGGGACGTG
AGTGAAGGATCGTTCCAGTGTTTCTCAGTCCAAGTCGTCTGTGTGTCTAT
ATTTCTTCTCTAGGGCGTTCCGTTCACTGGCTCTCAAACGCTGATCATGA
GGAGGCAAGCGCTAGGCTAGAGGGTAAACGTCTGCCTGGCCGCAACCTCC
CTCCCTCTTTCCCTTCCTCCCTCCCTTCCTCCCTCCTTCCCTCCCTCCTT
CCCTCCCTCACCCTCCAACGTCCCTCGTAACCACAGGAGGGGCAAAGAAC
TTGGAGTCTCGGAGGAGGGCTCTGTCAGACAGGGCGCGCAGGAGCTGATC
GACGACAAGGGCACTCGGCGAGTGTGTGTGTTTGTGGGTGGGGAAGGGAG
CCTGAAGGGGACGGATGGAGGACGAGGGGGAGGGAGGGAAGGAGGGAACG
GGGGTGAGACGACCGGAATATTGTCCATAGTCTTCTCCTACCTTTCTTTC
CCCCTGTCCCTCCTCGCCTCCTTCTCTCCCTCCATCCCTCACATCCCGCA
ACTCCACGGGTGCTGCGGAAAAGACTCGGAGGGTGAAGGGAGCGGTCTCC
AGTGCCTTCTTCCTGAGGGCAGCTCGGCTGCCCCGGATGGCAGGGTCGGA
GAGCAGGGCCCAACGGTTGAGAGAGAAGGGGAGGAGGAGGTAGTGGGAGG
GGGTGGAGGCTAGGCAGGGGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGTATGTGTGAGCGAGACACGTGCTGACGACATGCAGAAACAGGAA
TGAGCCACCCCTCCCTCCCTTACTCCCTCCCTCCCTCCCTCCCTCGTTA
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Coding sequence (CDS) from alignment at scaffold_16:665379..666977-

>mRNA_7235 ID=mRNA_7235|Name=jgi.p|Nanoce1779_2|596161|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_16:665379..666977- (Nannochloropsis oceanica)
CCTCCAACGTCCCTCGTAACCACAGGAGGGGCAAAGAACTTGGAGTCTCG
GAGGAGGGCTCTGTCAGACAGGGCGCGCAGGAGCTGATCGACGACAAGGG
CACTCGGCGAGTGTGTGTGTTTGTGGGTGGGGAAGGGAGCCTGAAGGGGA
CGGATGGAGGACGAGGGGGAGGGAGGGAAGGAGGGAACGGGGGTGAGACG
ACCGGAATATTGTCCATAGTCTTCTCCTACCTTTCTTTCCCCCTGTCCCT
CCTCGCCTCCTTCTCTCCCTCCATCCCTCACATCCCGCAACTCCACGGGT
GCTGCGGAAAAGACTCGGAGGGTGAAGGGAGCGGTCTCCAGTGCCTTCTT
CCTGAGGGCAGCTCGGCTGCCCCGGATGGCAGGGTCGGAGAGCAGGGCCC
AACGGTTGAGAGAGAAGGGGAGGAGGAGGTAGTGGGAGGGGGTGGAGGCT
AGCAGGTTCCTGCGTGGGGTTGTGAGTCGACCCCCAGTCGCTGCTGTCGC
TGGTGTGCAGGACGAAACGGCACCGCACGTAGAGCTCTTGTTCGACCAAG
CCATTCTCGAGGACAACGAGGGAGGCGCCAGAGCACTCGTACTGGAAGAG
GGTCACACCAGCCAGCATGTGGCAACGCCTGCACCTGCACGCGATCCATC
ACAATCGTCCCTCCCTCTCCCATGGCCTCCAGCTCAAATTGCGCCATTTG
GGAGGAGGACCCCAGCACACCCACGATGCTCTTGAAGCCTGGACCGACCA
CGCGCCATTCCTCCAACGTCCCTCGTAACCACAGGAGGGGCAAAGAACTT
GGAGTCTCGGAGGAGGGCTCTGTCAGACAGGGCGCGCAGGAGCTGATCGA
CGACAAGGGCACTCGGCGAGTGTGTGTGTTTGTGGGTGGGGAAGGGAGCC
TGAAGGGGACGGATGGAGGACGAGGGGGAGGGAGGGAAGGAGGGAACGGG
GGTGAGACGACCGGAATATTGTCCATAGTCTTCTCCTACCTTTCTTTCCC
CCTGTCCCTCCTCGCCTCCTTCTCTCCCTCCATCCCTCACATCCCGCAAC
TCCACGGGTGCTGCGGAAAAGACTCGGAGGGTGAAGGGAGCGGTCTCCAG
TGCCTTCTTCCTGAGGGCAGCTCGGCTGCCCCGGATGGCAGGGTCGGAGA
GCAGGGCCCAACGGTTGAGAGAGAAGGGGAGGAGGAGGTAGTGGGAGGGG
GTGGAGGCTAGCAGGTTCCTGCGTGGGGTTGTGAGTCGACCCCCAGTCGC
TGCTGTCGCTGGTGTGCAGGACGAAACGGCACCGCACGTAGAGCTCTTGT
TCGACCAAGCCATTCTCGAGGACAACGAGGGAGGCGCCAGAGCACTCGTA
CTGGAAGAGGGTCACACCAGCCAGCATGTGGCAACGCCTGCACCTGCACG
CGATCCATCACAATCGTCCCTCCCTCTCCCATGGCCTCCAGCTCAAATTG
CGCCATTTGGGAGGAGGACCCCAGCACACCCACGATGCTCTTGAAGCCTG
GACCGACCACGCGCCATTCCTCCAACGTCCCTCGTAACCACAGGAGGGGC
AAAGAACTTGGAGTCTCGGAGGAGGGCTCTGTCAGACAGGGCGCGCAGGA
GCTGATCGACGACAAGGGCACTCGGCGAGTGTGTGTGTTTGTGGGTGGGG
AAGGGAGCCTGAAGGGGACGGATGGAGGACGAGGGGGAGGGAGGGAAGGA
GGGAACGGGGGTGAGACGACCGGAATATTGTCCATAGTCTTCTCCTACCT
TTCTTTCCCCCTGTCCCTCCTCGCCTCCTTCTCTCCCTCCATCCCTCACA
TCCCGCAACTCCACGGGTGCTGCGGAAAAGACTCGGAGGGTGAAGGGAGC
GGTCTCCAGTGCCTTCTTCCTGAGGGCAGCTCGGCTGCCCCGGATGGCAG
GGTCGGAGAGCAGGGCCCAACGGTTGAGAGAGAAGGGGAGGAGGAGGTAG
TGGGAGGGGGTGGAGGCTAGCAGGTTCCTGCGTGGGGTTGTGAGTCGACC
CCCAGTCGCTGCTGTCGCTGGTGTGCAGGACGAAACGGCACCGCACGTAG
AGCTCTTGTTCGACCAAGCCATTCTCGAGGACAACGAGGGAGGCGCCAGA
GCACTCGTACTGGAAGAGGGTCACACCAGCCAGCATGTGGCAACGCCTGC
ACCTGCACGCGATCCATCACAATCGTCCCTCCCTCTCCCATGGCCTCCAG
CTCAAATTGCGCCATTTGGGAGGAGGACCCCAGCACACCCACGATGCTCT
TGAAGCCTGGACCGACCACGCGCCATT
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Synonyms
Publications