jgi.p|Nanoce1779_2|118546, mRNA_6985 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|118546
Unique NamemRNA_6985
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length940
Alignment locationscaffold_17:620134..622117 +

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Properties
Property NameValue
TranscriptId118632
TrackFilteredModels2
ProteinId118546
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:620134..622117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118546gene_6985Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118546mRNA_6985-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6985CDS_6985Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6985 ID=mRNA_6985|Name=jgi.p|Nanoce1779_2|118546|organism=Nannochloropsis oceanica|type=mRNA|length=940bp
TGCCGATGGAGCTCGACACTTGACCGTGCATAGCATGACGTCCGCACACA
TAAAATCATGGAAGCTTTTGACCTCCCTCCCCTCCCTCCCTCACTCCCTT
CTCCCTGTACTCACTCTTGTTTGGCTGTCAGCGCCAATGTTTCGAAGAGC
CGCAAGAAAAGGGGGTCATCGAGGTCGTATGTTAGGACACGGAGAGCATG
AAAGACACTCTCCGCATAATCGTCCTGGGGGATGAGGGGGTGGGAAAGTC
CTCGCTCATCTCGGCTTTCGTCTCACAGTGCTTCCCGGAAAAGGTTCCCT
CTGTCCTCACGCCCGTGCAAATCCCCGCCTCGGAGTCGTTGGAGAATGTG
GCTACCGTAGTGATAGACACGGCGGGCTCAGCCCATGTCGATCAGCTTGC
GGTCAAGATCAGGGAGGCTGACGCCATCATCCTCGTGTACAATTTCGAAC
GCATCGAGACCTACGAGCGTCTCGCCTCTCACTGGCTCCCCCTCATCCAA
CGGTGCATGTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTT
CCCTTCCTCCTTCCCTTCCTCCCTCGCGTCCTCCATATCCTTTTCGAGCG
AGGGAGGGAGAGAGGGAAGAGAGGGGGCAACCTTCTTTCCAAAACCAGTC
GTGCTTGCACGGAACAAGGTACAGACAGATGGGCAGTGATGAGGAGGGAA
GGAGGAAGAGGGGGAGGGAAAAGAGGGAGGGAAAGGAGAATTGGTGGGAA
GGAGGGAGGGAGGGAGGGAGGGAGGGAAAAGAGGGAGTAGCATATGCACG
ATCCGTCACTCCCACCCCCTCTCCCTCATCAATGTACCGTGTGTACAATT
AGTTCCAGCCCTTTGTTTGTGATATATGTGTATCATCCTAATGTAGTTTA
ATTCATTCCATCCCTTTGTTTCTAAGATGTATGTATCATC
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protein sequence of jgi.p|Nanoce1779_2|118546

>mRNA_6985-protein ID=mRNA_6985-protein|Name=jgi.p|Nanoce1779_2|118546|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MKDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLEN
VATVVIDTAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLI
QRCMSSSSSSSSSSSSSFPSSFPSSLASSISFSSEGGREGREGATFFPKP
VVLARNKVQTDGQ*
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mRNA from alignment at scaffold_17:620134..622117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6985 ID=mRNA_6985|Name=jgi.p|Nanoce1779_2|118546|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at scaffold_17:620134..622117+ (Nannochloropsis oceanica)
TGCCGATGGAGCTCGACACTTGACCGTGCATAGCATGACGTCCGCACACA
TAAAATCATGGAAGCTTTTGACCTCCCTCCCCTCCCTCCCTCACTCCCTT
CTCCCTGTACTCACTCTTGTTTGGCTGTCAGCGCCAATGTTTCGAAGAGC
CGCAAGAAAAGGGGGTCATCGAGGTCGTATGTTAGGACACGGAGGTAGGC
CATGACCCTGTGTAACCATGATAAGTTTTAGCAGACATCGAAGGAGGAGC
TGGCATGTAGAGTTTATCGGTGTTGAAGCATCAACGAAGTCAGCGAAGGT
AGTGCCTTTCCGGCAAGCAACAGGGCCATGACACACACTGTGTCACACAC
TTTGGGCACACCCGCGGCACGTAGCGCACACAGGAAAGGCCACAGACGAC
AAGCGCGTCGAATTGCACTTAAAATTGGCGTGGTGTGAACAGGGGAGCGA
AAGCCACGCAAAGGTTCCTCTTCGACCGCCCTGATGTCTAGCGCATGCAG
CCACGCGCGCCTTGGCCTTGGCCTCATTTAAACTTTATCTTACGCACAAT
ACCCACTTAATACGGGGACTTGCTTGCGTAAATTCTGCCTTTGAGATGGT
GGCACATTTTTTGTGGTATGGCTCATCCGTTCTCACGCGAATCCTCTCTC
CCTCCCTCCCTTACTTATTCGGACATCCCAACCGCAACGACACTAAAAGA
GCATGAAAGACACTCTCCGCATAATCGTCCTGGGGGATGAGGGGGTGGGA
AAGTCCTCGCTCATCTCGGCTTTCGTCTCACAGTGCTTCCCGGAAAAGGT
GAGAGGGGGAAAGGAGGGAGGTTGGAAGGGATTTTATGTATGCGGGAGGG
GAAACAAAAAACGACAACCACAACATGATAAGGGACAGGATGGAAGGAGA
GACCGAGAAATACAAGAAACAGGGGGTCCTGTACAGTGCTAGACGGAGAA
AAAAAATCGTGGTTAATGTGCAGGTATAAATCGAAAGTAATCCAAAACCC
TCCTTCATTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCCCCCAGGTTC
CCTCTGTCCTCACGCCCGTGCAAATCCCCGCCTCGGAGTCGTTGGAGAAT
GTGGCTACCGTAGTGATAGACACGGCGGGCTCAGCCCATGTCGATCAGCT
TGCGGTCAAGATCAGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGAAGGGCTCGCGCACTGCCGTAGCGCTTCGTGGTAAC
CCACCACCTTAAGACTAGAACATGTACAGCTTACCGACGAAGACATATGG
AGCGTCTGAGCGCCCATACAGCACCCTTCATCTCCCTCACTCCTGACCCT
CTTTTCTGTCCTTTCCATCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCGCCCTCCCTCCCTCCCTCCCCCACGACAACCTCCCGACATCCCC
ACCAAAGGAGGCTGACGCCATCATCCTCGTGTACAATTTCGAACGCATCG
AGACCTACGAGCGTCTCGCCTCTCACTGGCTCCCCCTCATCCAACGGTGC
ATGTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCCCTTC
CTCCTTCCCTTCCTCCCTCGCGTCCTCCATATCCTTTTCGAGCGAGGGAG
GGAGAGAGGGAAGAGAGGGGGCAACCTTCTTTCCAAAACCAGTCGTGCTT
GCACGGAACAAGGTACAGACAGATGGGCAGTGATGAGGAGGGAAGGAGGA
AGAGGGGGAGGGAAAAGAGGGAGGGAAAGGAGAATTGGTGGGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGAAAAGAGGGAGTAGCATATGCACGATCCGT
CACTCCCACCCCCTCTCCCTCATCAATGTACCGTGTGTACAATTAGTTCC
AGCCCTTTGTTTGTGATATATGTGTATCATCCTAATGTAGTTTAATTCAT
TCCATCCCTTTGTTTCTAAGATGTATGTATCATC
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Coding sequence (CDS) from alignment at scaffold_17:620134..622117+

>mRNA_6985 ID=mRNA_6985|Name=jgi.p|Nanoce1779_2|118546|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_17:620134..622117+ (Nannochloropsis oceanica)
ATGAAAGACACTCTCCGCATAATCGTCCTGGGGGATGAGGGGGTGGGAAA
GTCCTCGCTCATCTCGGCTTTCGTCTCACAGTGCTTCCCGGAAAAGGTTC
CCTCTGTCCTCACGCCCGTGCAAATCCCCGCCTCGGAGTCGTTGGAGAAT
GTGGCTACCGTAGTGATAGACACGGCGGGCTCAGCCCATGTCGATCAGCT
TGCGGTCAAGATCAGGGAGGCTGACGCCATCATCCTCGTGTACAATTTCG
AACGCATCGAGACCTACGAGCGTCTCGCCTCTCACTGGCTCCCCCTCATC
CAACGGTGCATGTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTC
CTTCCCTTCCTCCTTCCCTTCCTCCCTCGCGTCCTCCATATCCTTTTCGA
GCGAGGGAGGGAGAGAGGGAAGAGAGGGGGCAACCTTCTTTCCAAAACCA
GTCGTGCTTGCACGGAACAAGGTACAGACAGATGGGCAGTGAATGAAAGA
CACTCTCCGCATAATCGTCCTGGGGGATGAGGGGGTGGGAAAGTCCTCGC
TCATCTCGGCTTTCGTCTCACAGTGCTTCCCGGAAAAGGTTCCCTCTGTC
CTCACGCCCGTGCAAATCCCCGCCTCGGAGTCGTTGGAGAATGTGGCTAC
CGTAGTGATAGACACGGCGGGCTCAGCCCATGTCGATCAGCTTGCGGTCA
AGATCAGGGAGGCTGACGCCATCATCCTCGTGTACAATTTCGAACGCATC
GAGACCTACGAGCGTCTCGCCTCTCACTGGCTCCCCCTCATCCAACGGTG
CATGTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCCCTT
CCTCCTTCCCTTCCTCCCTCGCGTCCTCCATATCCTTTTCGAGCGAGGGA
GGGAGAGAGGGAAGAGAGGGGGCAACCTTCTTTCCAAAACCAGTCGTGCT
TGCACGGAACAAGGTACAGACAGATGGGCAGTGAATGAAAGACACTCTCC
GCATAATCGTCCTGGGGGATGAGGGGGTGGGAAAGTCCTCGCTCATCTCG
GCTTTCGTCTCACAGTGCTTCCCGGAAAAGGTTCCCTCTGTCCTCACGCC
CGTGCAAATCCCCGCCTCGGAGTCGTTGGAGAATGTGGCTACCGTAGTGA
TAGACACGGCGGGCTCAGCCCATGTCGATCAGCTTGCGGTCAAGATCAGG
GAGGCTGACGCCATCATCCTCGTGTACAATTTCGAACGCATCGAGACCTA
CGAGCGTCTCGCCTCTCACTGGCTCCCCCTCATCCAACGGTGCATGTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCCCTTCCTCCTTC
CCTTCCTCCCTCGCGTCCTCCATATCCTTTTCGAGCGAGGGAGGGAGAGA
GGGAAGAGAGGGGGCAACCTTCTTTCCAAAACCAGTCGTGCTTGCACGGA
ACAAGGTACAGACAGATGGGCAGTGA
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Synonyms
Publications