jgi.p|Nanoce1779_2|597205, mRNA_6507 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597205
Unique Name	mRNA_6507
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	989
Alignment location	scaffold_18:54471..55459 +

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Properties


Property Name	Value
TranscriptId	597291
Track	FilteredModels2
ProteinId	597205

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:54471..55459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597205	gene_6507	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597205	mRNA_6507-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6507	CDS_6507	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:54471..55459+
coding sequence from alignment at scaffold_18:54471..55459+

mRNA sequence

>mRNA_6507 ID=mRNA_6507|Name=jgi.p|Nanoce1779_2|597205|organism=Nannochloropsis oceanica|type=mRNA|length=989bp
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGACATCCAAGACGAGGA
CAACAAGGGCACAACCGCCACCGACGGGGAGAGGGTGGAAAAAAAAAAGA
AGAAGCGGAAGAGGAAGTCCAAGATTCCTAAGCCCACCGCGGCCTTGACG
ACAGCCGAAGCGCAATCAACCTACCTGTGGGAGCGCTACGTGAACTTGCT
CAACGTCTCGCCGCTTGACGCTGACGTAAATCGTTTCCCCCCCACCTGCT
TCACACTTCCCTCCTCCTCGTCGTCCTCTGGCTTCACTGCCCTAAAAAGA
GTGAAAGGGAAGCAACCCGCGAAGCCAACGGGCCACGCCCAAACCTCCGA
CAGTCACCCTGGCAAGGGAGACGCAAACGTCACCGATTTTCTCCAGCAAG
CCTTCCCACAGCTTCAAAAAATCGCTTCTGACAAATCCCAACGTGAAATG
GCACACCCTTTCGTCGTCCTACTATCTTCCTCCGCTGTACGAGCGAATGA
GCTCGCGAAGGATCTACGGATGAAGCTCCGGAATCTCAAGACGGCAAAAT
TGTTTGCGAAACATCTCAAAGTGGACGCACAGGTCGAAGTGCTTCAGAGT
GAGTTTAATGCCTTGGCGGTGGGCACGCCGAATCGCTTGATCAAATTGTT
GGAGATGAATGCGATGAGTTTGGCGCGATGCCGGTTGGTGGTGTTGGACA
GTAGTTTCAAAGATTCCAAGTCGTTTGATTTGTTGACCTTGCCCGGGGTG
GCGAAAGACACGGCGTTACTTTTGAGAGACCATGTCCTGCCAGCTATGAC
GGCACGCAAGGAGAGAAAAGACGTGAACGAGCAGCTAAGGTTGGCTCTGT
TTTAGAAATTGGAAGAGGAGGAGGAGGGAGGGAGGCAGGGAGCGGGAGAT
GAAGAGGAGGAAGGAATGGGAAGATAATCAAAAGCATATTCAATTTAAGG
CCACTGGACGTTACTCCTCGTTCCTCTCTTCTTCTTGGC

protein sequence of jgi.p|Nanoce1779_2|597205

>mRNA_6507-protein ID=mRNA_6507-protein|Name=jgi.p|Nanoce1779_2|597205|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MAHPFVVLLSSSAVRANELAKDLRMKLRNLKTAKLFAKHLKVDAQVEVLQ
SEFNALAVGTPNRLIKLLEMNAMSLARCRLVVLDSSFKDSKSFDLLTLPG
VAKDTALLLRDHVLPAMTARKERKDVNEQLRLALF*

mRNA from alignment at scaffold_18:54471..55459+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6507 ID=mRNA_6507|Name=jgi.p|Nanoce1779_2|597205|organism=Nannochloropsis oceanica|type=mRNA|length=989bp|location=Sequence derived from alignment at scaffold_18:54471..55459+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGACATCCAAGACGAGGA
CAACAAGGGCACAACCGCCACCGACGGGGAGAGGGTGGAAAAAAAAAAGA
AGAAGCGGAAGAGGAAGTCCAAGATTCCTAAGCCCACCGCGGCCTTGACG
ACAGCCGAAGCGCAATCAACCTACCTGTGGGAGCGCTACGTGAACTTGCT
CAACGTCTCGCCGCTTGACGCTGACGTAAATCGTTTCCCCCCCACCTGCT
TCACACTTCCCTCCTCCTCGTCGTCCTCTGGCTTCACTGCCCTAAAAAGA
GTGAAAGGGAAGCAACCCGCGAAGCCAACGGGCCACGCCCAAACCTCCGA
CAGTCACCCTGGCAAGGGAGACGCAAACGTCACCGATTTTCTCCAGCAAG
CCTTCCCACAGCTTCAAAAAATCGCTTCTGACAAATCCCAACGTGAAATG
GCACACCCTTTCGTCGTCCTACTATCTTCCTCCGCTGTACGAGCGAATGA
GCTCGCGAAGGATCTACGGATGAAGCTCCGGAATCTCAAGACGGCAAAAT
TGTTTGCGAAACATCTCAAAGTGGACGCACAGGTCGAAGTGCTTCAGAGT
GAGTTTAATGCCTTGGCGGTGGGCACGCCGAATCGCTTGATCAAATTGTT
GGAGATGAATGCGATGAGTTTGGCGCGATGCCGGTTGGTGGTGTTGGACA
GTAGTTTCAAAGATTCCAAGTCGTTTGATTTGTTGACCTTGCCCGGGGTG
GCGAAAGACACGGCGTTACTTTTGAGAGACCATGTCCTGCCAGCTATGAC
GGCACGCAAGGAGAGAAAAGACGTGAACGAGCAGCTAAGGTTGGCTCTGT
TTTAGAAATTGGAAGAGGAGGAGGAGGGAGGGAGGCAGGGAGCGGGAGAT
GAAGAGGAGGAAGGAATGGGAAGATAATCAAAAGCATATTCAATTTAAGG
CCACTGGACGTTACTCCTCGTTCCTCTCTTCTTCTTGGC

Coding sequence (CDS) from alignment at scaffold_18:54471..55459+

>mRNA_6507 ID=mRNA_6507|Name=jgi.p|Nanoce1779_2|597205|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_18:54471..55459+ (Nannochloropsis oceanica)
ATGGCACACCCTTTCGTCGTCCTACTATCTTCCTCCGCTGTACGAGCGAA
TGAGCTCGCGAAGGATCTACGGATGAAGCTCCGGAATCTCAAGACGGCAA
AATTGTTTGCGAAACATCTCAAAGTGGACGCACAGGTCGAAGTGCTTCAG
AGTGAGTTTAATGCCTTGGCGGTGGGCACGCCGAATCGCTTGATCAAATT
GTTGGAGATGAATGCGATGAGTTTGGCGCGATGCCGGTTGGTGGTGTTGG
ACAGTAGTTTCAAAGATTCCAAGTCGTTTGATTTGTTGACCTTGCCCGGG
GTGGCGAAAGACACGGCGTTACTTTTGAGAGACCATGTCCTGCCAGCTAT
GACGGCACGCAAGGAGAGAAAAGACGTGAACGAGCAGCTAAGGTTGGCTC
TGTTTTAG

Synonyms

Publications