jgi.p|Nanoce1779_2|550587, gene_1178 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550587
Unique Namegene_1178
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:1425099..1428461 +

Link to JBrowse

Properties
Property NameValue
TranscriptId550673
ProteinId550587
Product nameGlycoside hydrolase superfamily
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1425099..1428461 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008933lytic transglycosylase activity
GO:0015923mannosidase activity
GO:0015924mannosyl-oligosaccharide mannosidase activity
GO:0015925galactosidase activity
GO:0015926glucosidase activity
GO:0015927trehalase activity
GO:0015928fucosidase activity
GO:0015929hexosaminidase activity
GO:0016160amylase activity
GO:0004568chitinase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0006032chitin catabolic process
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05870NO02G05870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550587mRNA_1178-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550587mRNA_1178Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|550587

>mRNA_1178-protein ID=mRNA_1178-protein|Name=jgi.p|Nanoce1779_2|550587|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MATNHPRRHYRRPLLFHLSLQFALAFVTAAAAASPGSPSPCPCENTTLCQ
PIQGQRAKEVYGFRDGDPNNTKYETYDWDVVSTVAWTPVPQLVCHAHARG
ARVVSQGIMAPPNPLPISASDDATARAIWITNTVNQIQSQFLDGMVFDFE
GPLLPSDPMNVNYVLLVNETRAALHAAVPGSQVGVCLAWNPHGVDGRYYD
NLNLMKAADLAYIMSYDTRSQILGQCIASANAALPATRWGLEEYLTLGAD
PQKMILGVPWYGYDYTCQEEEEEEGNEEINPLDVNCPIAMVPFRGVGCSD
AAGVQVPYSIIQERLVAGKTATGRMWDAYMQTPFYNYIDEGDGSLHQVHY
DDAESLRLKYGVARELGLRGVGPYTFDDLPGVGEGGKEGEEAARGMWEAL
RAFTDEEEEQGKERKGERKRGLRKGGG*
back to top
Synonyms
Publications