jgi.p|Nanoce1779_2|573634, mRNA_645 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573634
Unique NamemRNA_645
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1325
Alignment locationscaffold_2:88349..89701 -

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Properties
Property NameValue
TranscriptId573720
TrackFilteredModels2
ProteinId573634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:88349..89701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573634gene_645Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573634mRNA_645-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_645CDS_645Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_645 ID=mRNA_645|Name=jgi.p|Nanoce1779_2|573634|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp
AGACGGACGATTTCTGCGTGCCTCATCTGAGGCTGCAGCAGCATTACTAT
GCTTCACTAGCGGTGGTGCGGGATATAGTACATTACAAGACACCAAGACC
GGTCAAGGTTTGCTTGTCATCACAAGACGAGATCCAGACGAGCAACGATG
GAGCCTCAAAGCCCCCCTCAGGAGTCGTTCAAGCTTGCACCTGCAAGTAG
CACTGCCTGCGACGGAAAGAAGCCAAGTGAAATCGCCAGCCTCGTCTCTT
TAGCACCAGCCTCATCATCACAAGTCCGTCCAGCACCTGTGCTTCTGGCG
CCCCGGACCACCCCTCGTCACATCCAGAGGACATCGACAGGGAGCTTGGG
GCGGCCAGCCTCGGCGCCTGCGCAGGCCACTTCCCTCTACCCTGTCTCGT
ATTTGTCCGTCTTGCCCACTCACCTCTTGCAATCTCAGAGCCTGTCCTTG
GGCAAGCCGACGACGATGGCGGGAAGTAGCAGCAACAACACTACGACCAG
TGCCGTGAACCACCCCTCGGTAGCTATACCGGGTGGAGCTATGTCATCTT
TTTCGCAACAACTCGAACCCACGCCACCGCTGCCACACAATCAATCGATC
TCACCTTACATGCTAGTGGTACCCCGCGTCAGCAGCAGCAGCAAGAACAA
CAATCGCAGTCACAAAGTGAGCGGCACTGACAGCAAGAGCAGTGGACGCA
GCAATAGCAGCTGCGGCAGCCGCAGCAAGCCTAGCAATATCCCCCATGAG
ATCAGCAGCAGCACCAACAACGGCAGCAGCAACGGGGAACTGACGCATCA
GAATATCAACGACTTCATGCGTCTCCAGACTCAAATGATGGGCAGCTGGA
CGGCCGCATCTTCTACCTCCTCGGACCCCCTCTCGCCTTCCGACCCCAGC
CTCACCAACAGCGTGTCACCGGGACACCGGCAGTCCTCCTGCAGCACCCA
TTATATCAGCAAGGGCAGCCTCCTCTATACTCAGGCAACGGGTTTCACCA
CTCCTCCCGTGCGGTCGGGGAGACCAGGGCCTTGGCAACTCCGACTATGA
GCAGCAACGATTGGAGCAGCAACAGCAGTGTGCGAGGCGGCAGTCCTAAG
AATTACCACCACCCGACCACTGGAAACGTGCCTGTCTTTTTGCAACCGCA
GCAACAGCTGCACGCCCTACCCCACCATGCAGCGACCGAACCTCACCCAG
CACACCCTCACCACAACCACCAGTCCCAACCGCAACGAAACCACCACCAC
CACCACCACCACTACCACCAACAGCAGCAGCAGCCACTATCCACGATTGC
GTCTCATCTCACCAACAGCAAAGAT
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protein sequence of jgi.p|Nanoce1779_2|573634

>mRNA_645-protein ID=mRNA_645-protein|Name=jgi.p|Nanoce1779_2|573634|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MEPQSPPQESFKLAPASSTACDGKKPSEIASLVSLAPASSSQVRPAPVLL
APRTTPRHIQRTSTGSLGRPASAPAQATSLYPVSYLSVLPTHLLQSQSLS
LGKPTTMAGSSSNNTTTSAVNHPSVAIPGGAMSSFSQQLEPTPPLPHNQS
ISPYMLVVPRVSSSSKNNNRSHKVSGTDSKSSGRSNSSCGSRSKPSNIPH
EISSSTNNGSSNGELTHQNINDFMRLQTQMMGSWTAASSTSSDPLSPSDP
SLTNSVSPGHRQSSCSTHYISKGSLLYTQATGFTTPPVRSGRPGPWQLRL
*
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mRNA from alignment at scaffold_2:88349..89701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_645 ID=mRNA_645|Name=jgi.p|Nanoce1779_2|573634|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at scaffold_2:88349..89701- (Nannochloropsis oceanica)
AGACGGACGATTTCTGCGTGCCTCATCTGAGGCTGCAGCAGCATTACTAT
GCTTCACTAGCGGTGGTGCGGGATATAGTACATTACAAGACACCAAGACC
GGTCAAGGTTTGCTTGTCATCACAAGACGAGATCCAGACGAGCAACGATG
GAGCCTCAAAGCCCCCCTCAGGAGTCGTTCAAGCTTGCACCTGCAAGTAG
CACTGCCTGCGACGGAAAGAAGCCAAGTGAAATCGCCAGCCTCGTCTCTT
TAGCACCAGCCTCATCATCACAAGTCCGTCCAGCACCTGTGCTTCTGGCG
CCCCGGACCACCCCTCGTCACATCCAGAGGACATCGACAGGGAGCTTGGG
GCGGCCAGCCTCGGCGCCTGCGCAGGCCACTTCCCTCTACCCTGTCTCGT
ATTTGTCCGTCTTGCCCACTCACCTCTTGCAATCTCAGAGCCTGTCCTTG
GGCAAGCCGACGACGATGGCGGGAAGTAGCAGCAACAACACTACGACCAG
TGCCGTGAACCACCCCTCGGTAGCTATACCGGGTGGAGCTATGTCATCTT
TTTCGCAACAACTCGAACCCACGCCACCGCTGCCACACAATCAATCGATC
TCACCTTACATGCTAGTGGTACCCCGCGTCAGCAGCAGCAGCAAGAACAA
CAATCGCAGTCACAAAGTGAGCGGCACTGACAGCAAGAGCAGTGGACGCA
GCAATAGCAGCTGCGGCAGCCGCAGCAAGCCTAGCAATATCCCCCATGAG
ATCAGCAGCAGCACCAACAACGGCAGCAGCAACGGGGAACTGACGCATCA
GAATATCAACGACTTCATGCGTCTCCAGACTCAAATGATGGGCAGCTGGA
CGGCCGCATCTTCTACCTCCTCGGACCCCCTTCCCTCCTCCTCATCACGT
GGCCCCCCTCTCGCCTTCCGACCCCAGCCTCACCAACAGCGTGTCACCGG
GACACCGGCAGTCCTCCTGCAGCACCCATTATATCAGCAAGGGCAGCCTC
CTCTATACTCAGGCAACGGGTTTCACCACTCCTCCCGTGCGGTCGGGGAG
ACCAGGGCCTTGGCAACTCCGACTATGAGCAGCAACGATTGGAGCAGCAA
CAGCAGTGTGCGAGGCGGCAGTCCTAAGAATTACCACCACCCGACCACTG
GAAACGTGCCTGTCTTTTTGCAACCGCAGCAACAGCTGCACGCCCTACCC
CACCATGCAGCGACCGAACCTCACCCAGCACACCCTCACCACAACCACCA
GTCCCAACCGCAACGAAACCACCACCACCACCACCACCACTACCACCAAC
AGCAGCAGCAGCCACTATCCACGATTGCGTCTCATCTCACCAACAGCAAA
GAT
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Coding sequence (CDS) from alignment at scaffold_2:88349..89701-

>mRNA_645 ID=mRNA_645|Name=jgi.p|Nanoce1779_2|573634|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_2:88349..89701- (Nannochloropsis oceanica)
CCCCCTCTCGCCTTCCGACCCCAGCCTCACCAACAGCGTGTCACCGGGAC
ACCGGCAGTCCTCCTGCAGCACCCATTATATCAGCAAGGGCAGCCTCCTC
TATACTCAGGCAACGGGTTTCACCACTCCTCCCGTGCGGTCGGGGAGACC
AGGGCCTTGGCAACTCCGACTATGAATGGAGCCTCAAAGCCCCCCTCAGG
AGTCGTTCAAGCTTGCACCTGCAAGTAGCACTGCCTGCGACGGAAAGAAG
CCAAGTGAAATCGCCAGCCTCGTCTCTTTAGCACCAGCCTCATCATCACA
AGTCCGTCCAGCACCTGTGCTTCTGGCGCCCCGGACCACCCCTCGTCACA
TCCAGAGGACATCGACAGGGAGCTTGGGGCGGCCAGCCTCGGCGCCTGCG
CAGGCCACTTCCCTCTACCCTGTCTCGTATTTGTCCGTCTTGCCCACTCA
CCTCTTGCAATCTCAGAGCCTGTCCTTGGGCAAGCCGACGACGATGGCGG
GAAGTAGCAGCAACAACACTACGACCAGTGCCGTGAACCACCCCTCGGTA
GCTATACCGGGTGGAGCTATGTCATCTTTTTCGCAACAACTCGAACCCAC
GCCACCGCTGCCACACAATCAATCGATCTCACCTTACATGCTAGTGGTAC
CCCGCGTCAGCAGCAGCAGCAAGAACAACAATCGCAGTCACAAAGTGAGC
GGCACTGACAGCAAGAGCAGTGGACGCAGCAATAGCAGCTGCGGCAGCCG
CAGCAAGCCTAGCAATATCCCCCATGAGATCAGCAGCAGCACCAACAACG
GCAGCAGCAACGGGGAACTGACGCATCAGAATATCAACGACTTCATGCGT
CTCCAGACTCAAATGATGGGCAGCTGGACGGCCGCATCTTCTACCTCCTC
GGACCCCCTCTCGCCTTCCGACCCCAGCCTCACCAACAGCGTGTCACCGG
GACACCGGCAGTCCTCCTGCAGCACCCATTATATCAGCAAGGGCAGCCTC
CTCTATACTCAGGCAACGGGTTTCACCACTCCTCCCGTGCGGTCGGGGAG
ACCAGGGCCTTGGCAACTCCGACTATGAATGGAGCCTCAAAGCCCCCCTC
AGGAGTCGTTCAAGCTTGCACCTGCAAGTAGCACTGCCTGCGACGGAAAG
AAGCCAAGTGAAATCGCCAGCCTCGTCTCTTTAGCACCAGCCTCATCATC
ACAAGTCCGTCCAGCACCTGTGCTTCTGGCGCCCCGGACCACCCCTCGTC
ACATCCAGAGGACATCGACAGGGAGCTTGGGGCGGCCAGCCTCGGCGCCT
GCGCAGGCCACTTCCCTCTACCCTGTCTCGTATTTGTCCGTCTTGCCCAC
TCACCTCTTGCAATCTCAGAGCCTGTCCTTGGGCAAGCCGACGACGATGG
CGGGAAGTAGCAGCAACAACACTACGACCAGTGCCGTGAACCACCCCTCG
GTAGCTATACCGGGTGGAGCTATGTCATCTTTTTCGCAACAACTCGAACC
CACGCCACCGCTGCCACACAATCAATCGATCTCACCTTACATGCTAGTGG
TACCCCGCGTCAGCAGCAGCAGCAAGAACAACAATCGCAGTCACAAAGTG
AGCGGCACTGACAGCAAGAGCAGTGGACGCAGCAATAGCAGCTGCGGCAG
CCGCAGCAAGCCTAGCAATATCCCCCATGAGATCAGCAGCAGCACCAACA
ACGGCAGCAGCAACGGGGAACTGACGCATCAGAATATCAACGACTTCATG
CGTCTCCAGACTCAAATGATGGGCAGCTGGACGGCCGCATCTTCTACCTC
CTCGGA
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Synonyms
Publications