jgi.p|Nanoce1779_2|599754, mRNA_7715 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599754
Unique Name	mRNA_7715
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1803
Alignment location	scaffold_21:151161..152963 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599840
Track	FilteredModels2
ProteinId	599754

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:151161..152963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599754	gene_7715	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599754	mRNA_7715-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7715	CDS_7715	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:151161..152963+
coding sequence from alignment at scaffold_21:151161..152963+

mRNA sequence

>mRNA_7715 ID=mRNA_7715|Name=jgi.p|Nanoce1779_2|599754|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp
TGGACCCTGGAGAAGAAAGAAAGAGGGCGCTGCACCCCAGCTCATTTTCA
CTCGATCCACTCACCATCATATACCGCAACATACAGGTGGCTGTGGGGAG
GAGGGGGGCAAAGTTACGAAACACTTTCGGCCTGCGTGACTTCCAGGCTG
TCCAGGTAAGGCTTTGCCGGCTTCAGCCACTTTTTTCTACGCGATGCTGC
ACAGCGGAGGGGTTGGTGGCGGGGCCAGAGGAGGAGACGGCGGCATCAAC
ACCAGTGGAAACATTTTGACGGGGATCGAGACGCCCATCGACCTGGCGAC
GCGATTAGTGCGGGCCGTGGCGCAGGCCTTTTATGCGGACGATACAATAG
TGGTGCTGGAGGCCTTGCTCCGAGACCGTCATTTGAGAGACACTGATATG
GAGACACGTCTGGGCGTGGGGGCCAAGCAAGCACGGCGCCTGCTCACGGA
GTTATTGGAGGAGCACTTGATCCGGACTGAAGACGTGCTAGATGAGTCGA
CGGGGAAACGGGAATTATACTACTATATAGATTTTTCTCACTTTACCAAC
GTGGTGCGGTACCGGGTCCACCTCATGCACCGGGAGTTAGAGCGAATGGA
GCGGGAGGCCAATGACAACCAAACATACGAATGTCCTCACTGCGGCCGCA
CACTACCGCTCTTAGAGGTGCAACCGTTGCGCAACCAACGGTATGGGTTT
TGCTGTCCTACCTGCTGCAACAATGAAATGCACTCCACCTGTGACGGCAT
CAGGTTTCAGCTTCGGCCAAAGACAGGCGTGACGGGGTTCGAAGAAGTCC
AGGCACTCAAAGATAAGTTACGCACTCAGATGTACATTGCCACAGACGAA
ACCAGCGCAGCCTCACACGACGGCATCTACAACTTGCTATCTTCCTTGGA
GCAAAAGCCATTGCCAAGCAACCTGCCTAGCGAGCTCCTTGCTGTGGGTG
TGGGCGGCGGCCAGAGCGAGGAGGACGAAATTCGGAGGCGCCGACGTGGA
GGCTGGTGTGGAGGGATGGGAAATCATCCGGGCGGGGGGTCGGCCGGCAT
CTTCGAAGACCTGGCCGCCTCCACGCGGGATGGTGGCATCCAGGCGGACG
AGGAAACGATGGGCGAATCGATGCTGAATGTGTTGCGGACTGCCCGGGCC
CAGCCATCCTTTTTGCAGGGCAGTCGTGTCATCAAGGAGGACACTGACCA
TCTCGAACAAGCTGCGGGAAGTGCACAGCAAGTGAGTCGGGGCGAAGGCT
TCAATGATAGTGGGGGCAATCAGCTGCCAAAGAGAGAGGTGGAGGTAATA
ACCGAGGCCGAGCGAATCGAGGCTTACCGGCGGGCGTACGTCGAAGCGTT
ACAAAAAGAGTTGGGGGAAGATAATTATAGGAAGGAGGGTGGAGGGGTTC
GAGAATCGGTAGCGGCAGTCAAGAGGGAGGTAGGCGAAGAGCAAGAGGAC
GAGGACGAGGACGAGGTCGACTGGGAGGAAGGCGAGTAACACAGTTGACT
TGGCATTCGCGTCTTGACATCTTAGTCGAGCCTAGGCTCTCCCCAGACAA
TTGTTGAGTCCATGAGCCCCTTTTGCCAGAAGTGTCATGGAACCGAATAA
AGCCCGGGCGACTGGAGAGCTTTTGGCGGGCTGTGGCCCATGCTGTCGTG
ATGTCACACCGATGTACGTGGTTTGAACCGACGATGCATGCGTGGTAAAA
ACAAATGCGACAACATAAAATAAATCGAAAGAAACTGTTAAGGACGTAAA
TAGGATAAACACACAAAGAATAAATGCACATTGTCGGCAAATACATAAAA
TAC

protein sequence of jgi.p|Nanoce1779_2|599754

>mRNA_7715-protein ID=mRNA_7715-protein|Name=jgi.p|Nanoce1779_2|599754|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MLHSGGVGGGARGGDGGINTSGNILTGIETPIDLATRLVRAVAQAFYADD
TIVVLEALLRDRHLRDTDMETRLGVGAKQARRLLTELLEEHLIRTEDVLD
ESTGKRELYYYIDFSHFTNVVRYRVHLMHRELERMEREANDNQTYECPHC
GRTLPLLEVQPLRNQRYGFCCPTCCNNEMHSTCDGIRFQLRPKTGVTGFE
EVQALKDKLRTQMYIATDETSAASHDGIYNLLSSLEQKPLPSNLPSELLA
VGVGGGQSEEDEIRRRRRGGWCGGMGNHPGGGSAGIFEDLAASTRDGGIQ
ADEETMGESMLNVLRTARAQPSFLQGSRVIKEDTDHLEQAAGSAQQVSRG
EGFNDSGGNQLPKREVEVITEAERIEAYRRAYVEALQKELGEDNYRKEGG
GVRESVAAVKREVGEEQEDEDEDEVDWEEGE*

mRNA from alignment at scaffold_21:151161..152963+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7715 ID=mRNA_7715|Name=jgi.p|Nanoce1779_2|599754|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp|location=Sequence derived from alignment at scaffold_21:151161..152963+ (Nannochloropsis oceanica)
TGGACCCTGGAGAAGAAAGAAAGAGGGCGCTGCACCCCAGCTCATTTTCA
CTCGATCCACTCACCATCATATACCGCAACATACAGGTGGCTGTGGGGAG
GAGGGGGGCAAAGTTACGAAACACTTTCGGCCTGCGTGACTTCCAGGCTG
TCCAGGTAAGGCTTTGCCGGCTTCAGCCACTTTTTTCTACGCGATGCTGC
ACAGCGGAGGGGTTGGTGGCGGGGCCAGAGGAGGAGACGGCGGCATCAAC
ACCAGTGGAAACATTTTGACGGGGATCGAGACGCCCATCGACCTGGCGAC
GCGATTAGTGCGGGCCGTGGCGCAGGCCTTTTATGCGGACGATACAATAG
TGGTGCTGGAGGCCTTGCTCCGAGACCGTCATTTGAGAGACACTGATATG
GAGACACGTCTGGGCGTGGGGGCCAAGCAAGCACGGCGCCTGCTCACGGA
GTTATTGGAGGAGCACTTGATCCGGACTGAAGACGTGCTAGATGAGTCGA
CGGGGAAACGGGAATTATACTACTATATAGATTTTTCTCACTTTACCAAC
GTGGTGCGGTACCGGGTCCACCTCATGCACCGGGAGTTAGAGCGAATGGA
GCGGGAGGCCAATGACAACCAAACATACGAATGTCCTCACTGCGGCCGCA
CACTACCGCTCTTAGAGGTGCAACCGTTGCGCAACCAACGGTATGGGTTT
TGCTGTCCTACCTGCTGCAACAATGAAATGCACTCCACCTGTGACGGCAT
CAGGTTTCAGCTTCGGCCAAAGACAGGCGTGACGGGGTTCGAAGAAGTCC
AGGCACTCAAAGATAAGTTACGCACTCAGATGTACATTGCCACAGACGAA
ACCAGCGCAGCCTCACACGACGGCATCTACAACTTGCTATCTTCCTTGGA
GCAAAAGCCATTGCCAAGCAACCTGCCTAGCGAGCTCCTTGCTGTGGGTG
TGGGCGGCGGCCAGAGCGAGGAGGACGAAATTCGGAGGCGCCGACGTGGA
GGCTGGTGTGGAGGGATGGGAAATCATCCGGGCGGGGGGTCGGCCGGCAT
CTTCGAAGACCTGGCCGCCTCCACGCGGGATGGTGGCATCCAGGCGGACG
AGGAAACGATGGGCGAATCGATGCTGAATGTGTTGCGGACTGCCCGGGCC
CAGCCATCCTTTTTGCAGGGCAGTCGTGTCATCAAGGAGGACACTGACCA
TCTCGAACAAGCTGCGGGAAGTGCACAGCAAGTGAGTCGGGGCGAAGGCT
TCAATGATAGTGGGGGCAATCAGCTGCCAAAGAGAGAGGTGGAGGTAATA
ACCGAGGCCGAGCGAATCGAGGCTTACCGGCGGGCGTACGTCGAAGCGTT
ACAAAAAGAGTTGGGGGAAGATAATTATAGGAAGGAGGGTGGAGGGGTTC
GAGAATCGGTAGCGGCAGTCAAGAGGGAGGTAGGCGAAGAGCAAGAGGAC
GAGGACGAGGACGAGGTCGACTGGGAGGAAGGCGAGTAACACAGTTGACT
TGGCATTCGCGTCTTGACATCTTAGTCGAGCCTAGGCTCTCCCCAGACAA
TTGTTGAGTCCATGAGCCCCTTTTGCCAGAAGTGTCATGGAACCGAATAA
AGCCCGGGCGACTGGAGAGCTTTTGGCGGGCTGTGGCCCATGCTGTCGTG
ATGTCACACCGATGTACGTGGTTTGAACCGACGATGCATGCGTGGTAAAA
ACAAATGCGACAACATAAAATAAATCGAAAGAAACTGTTAAGGACGTAAA
TAGGATAAACACACAAAGAATAAATGCACATTGTCGGCAAATACATAAAA
TAC

Coding sequence (CDS) from alignment at scaffold_21:151161..152963+

>mRNA_7715 ID=mRNA_7715|Name=jgi.p|Nanoce1779_2|599754|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_21:151161..152963+ (Nannochloropsis oceanica)
ATGCTGCACAGCGGAGGGGTTGGTGGCGGGGCCAGAGGAGGAGACGGCGG
CATCAACACCAGTGGAAACATTTTGACGGGGATCGAGACGCCCATCGACC
TGGCGACGCGATTAGTGCGGGCCGTGGCGCAGGCCTTTTATGCGGACGAT
ACAATAGTGGTGCTGGAGGCCTTGCTCCGAGACCGTCATTTGAGAGACAC
TGATATGGAGACACGTCTGGGCGTGGGGGCCAAGCAAGCACGGCGCCTGC
TCACGGAGTTATTGGAGGAGCACTTGATCCGGACTGAAGACGTGCTAGAT
GAGTCGACGGGGAAACGGGAATTATACTACTATATAGATTTTTCTCACTT
TACCAACGTGGTGCGGTACCGGGTCCACCTCATGCACCGGGAGTTAGAGC
GAATGGAGCGGGAGGCCAATGACAACCAAACATACGAATGTCCTCACTGC
GGCCGCACACTACCGCTCTTAGAGGTGCAACCGTTGCGCAACCAACGGTA
TGGGTTTTGCTGTCCTACCTGCTGCAACAATGAAATGCACTCCACCTGTG
ACGGCATCAGGTTTCAGCTTCGGCCAAAGACAGGCGTGACGGGGTTCGAA
GAAGTCCAGGCACTCAAAGATAAGTTACGCACTCAGATGTACATTGCCAC
AGACGAAACCAGCGCAGCCTCACACGACGGCATCTACAACTTGCTATCTT
CCTTGGAGCAAAAGCCATTGCCAAGCAACCTGCCTAGCGAGCTCCTTGCT
GTGGGTGTGGGCGGCGGCCAGAGCGAGGAGGACGAAATTCGGAGGCGCCG
ACGTGGAGGCTGGTGTGGAGGGATGGGAAATCATCCGGGCGGGGGGTCGG
CCGGCATCTTCGAAGACCTGGCCGCCTCCACGCGGGATGGTGGCATCCAG
GCGGACGAGGAAACGATGGGCGAATCGATGCTGAATGTGTTGCGGACTGC
CCGGGCCCAGCCATCCTTTTTGCAGGGCAGTCGTGTCATCAAGGAGGACA
CTGACCATCTCGAACAAGCTGCGGGAAGTGCACAGCAAGTGAGTCGGGGC
GAAGGCTTCAATGATAGTGGGGGCAATCAGCTGCCAAAGAGAGAGGTGGA
GGTAATAACCGAGGCCGAGCGAATCGAGGCTTACCGGCGGGCGTACGTCG
AAGCGTTACAAAAAGAGTTGGGGGAAGATAATTATAGGAAGGAGGGTGGA
GGGGTTCGAGAATCGGTAGCGGCAGTCAAGAGGGAGGTAGGCGAAGAGCA
AGAGGACGAGGACGAGGACGAGGTCGACTGGGAGGAAGGCGAGTAA

Synonyms

Publications