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Properties
| Property Name | Value |
|---|
| TranscriptId | 189646 |
| Track | FilteredModels2 |
| ProteinId | 189560 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:319358..321815 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8307 ID=mRNA_8307|Name=jgi.p|Nanoce1779_2|189560|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
GACGAGACCATGCCACTTGCTTCCGCAGTGCCTGCGGTTTACTTAACTGA
TAAAAGTTTCCCGCTATTCCCCATCTTCTCCTTATCTCCACAGCCCCGAC
CGACATAGCTACCCGAGGCCAAGATGGGCATTCAAGCAATTTTCGTCGAC
CCAGTAGAGGACGAGTTGCAATGTCCTATCTGCCATCTGGTATTGGATAA
GCCAGTCTCTCACTGTAGTCAAGGGCACACTTTTTGTCAGACCTGCATTC
AAGCCTGGTTGAATCATCCCCCACCATCTAAAGCCGGTCCTTCCTCCTCC
AAGACGAAAAAGAAAGCTGCTCACTGTCCTGGCTGCATGCTGCCTCTGGG
CCCAAAAGTCAGGAACATTGTCGCCGAAGCCATGGTGGCCAAGCTCCGGG
TCCGCTGCAGCAACAGCAACAGAAGGGAGGGCGAGCAGGGTATGATGAGG
AAGGGGGGGAAATACGAGGAGGAAGGAGGGGATGGAGGGAGGGAGGGAGA
GAGGGAGGGGCCGGCATGTGAGTGGGTGGGGAGGTTGGAAGAGCTTGAGA
GGCATCGACGATCAGATTGTGCGTATGAGGTCATTGCGTGTCCGTATCAT
CATCATCATCATCATCGTCAGCAGCAGCAGGAGCCTCGAGAGGAGCGAGC
GGAGCAAGTAGAGGAAGGGGAAAAGGAAGAGAGCTACAGTAGCAACAGCC
AGAGCAGCAGCAACAGCAGCAGCACGAGGAAGGACAGCAAGCGTCAGACG
TCCGAGGCGAAGAAGACCTGTGCCATCTCCACCGCTACCACCACCGCTAG
AAACTGCAACAGCAGTGAAAATGGCTGCTCCTATCAGGCTTGGCGCTCGC
GTATCGAAAAGGAACACGTCTCCCAGTGCCCCCATCGCCCCATCTCCTGC
TCCCTTGCCTGCGGGTGGACGGGAAAGAAGATGGAGGAAGCCCGTCACCA
GGGCACAAGCTGCCCACGTGTCATCCTGTTTTGTCAGAATAAGGGGTGCC
CGGCCTCTTTTGTACGGGCGGGGAGTGGCGCCCACTACGACGCAGAGTGT
CCGTTCCAGCCGGTGCCCTGTGTGTTTGCCCCGCACGGCTGTCTCGTGCG
GCCGCTCAGGCAGGCCCAAGCGCAGCATCAGGCGGAGGCAGCGGTAGAGC
ACGCCAGCTTGACGGCCAGTAAAATCTCGAGTCTAGAGGCGGGCATCGAG
AGAATGTGCGGGCAATTCGAGGACTTGCGGCAACGCGTGGAGCACTCGGA
GAAGGCCACGAGGGAAACTATCGTGTCGCTGGTTGCCAACCCCCACCCGG
GCGGCGAAGTGACGTACATCGAGGAGGTGGAAGGATGAGGGGAGAATGAC
AAGGAACAAAGGAAGGGTGAGTGGGCAGGAGGTATTGAAGTCTCTATTAT
GTAAGTAGGTGCGGGTGAAATGGCGGATGCGCTGACAAGCAGAAGGGGAG
GAGGATGAAAGCAAGTGAAAGACAGTAAATAAAGTGACGACGAGAGAGAA
AGTGAGAGGGTAAGAGATATGAACTTATATTATTTTAAACAATGACGACA
AGAGCCACAGAAAGAAAGAATGTGTTGAGCCATTA back to topprotein sequence of jgi.p|Nanoce1779_2|189560 >mRNA_8307-protein ID=mRNA_8307-protein|Name=jgi.p|Nanoce1779_2|189560|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MGIQAIFVDPVEDELQCPICHLVLDKPVSHCSQGHTFCQTCIQAWLNHPP
PSKAGPSSSKTKKKAAHCPGCMLPLGPKVRNIVAEAMVAKLRVRCSNSNR
REGEQGMMRKGGKYEEEGGDGGREGEREGPACEWVGRLEELERHRRSDCA
YEVIACPYHHHHHHRQQQQEPREERAEQVEEGEKEESYSSNSQSSSNSSS
TRKDSKRQTSEAKKTCAISTATTTARNCNSSENGCSYQAWRSRIEKEHVS
QCPHRPISCSLACGWTGKKMEEARHQGTSCPRVILFCQNKGCPASFVRAG
SGAHYDAECPFQPVPCVFAPHGCLVRPLRQAQAQHQAEAAVEHASLTASK
ISSLEAGIERMCGQFEDLRQRVEHSEKATRETIVSLVANPHPGGEVTYIE
EVEG* back to topmRNA from alignment at scaffold_23:319358..321815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8307 ID=mRNA_8307|Name=jgi.p|Nanoce1779_2|189560|organism=Nannochloropsis oceanica|type=mRNA|length=2458bp|location=Sequence derived from alignment at scaffold_23:319358..321815- (Nannochloropsis oceanica)
GACGAGACCATGCCACTTGCTTCCGCAGTGCCTGCGGTTTACTTAACTGA
TAAAAGTTTCCCGCTATTCCCCATCTTCTCCTTATCTCCACAGCCCCGAC
CGACATAGCTACCCGAGGCCAAGATGGGCATTCAAGCAATTTTCGTCGAC
CCAGTAGAGGACGAGTTGCAATGTCCTATCTGCCATCTGGTATTGGATAA
GCCAGTCTCTCACTGTAGTCAAGGGCACACTTTTTGTCAGACCTGCATTC
AAGCCTGTACGTATCTTGGGAGGAGAAAAAAGGGGAGAGTCGAGAGAGGT
GCGTGATCTTGAAAGAGGGAGAGACTCTTACTCACAGCCCCCGTCAACAT
TCCTCTTCCTCCTCCAACCTTCATCCTTCTAGGGTTGAATCATCCCCCAC
CATCTAAAGCCGGTCCTTCCTCCTCCAAGACGAAAAAGAAAGCTGCTCAC
TGTCCTGGCTGCATGCTGCCTCTGGGCCCAAAAGTCAGGAACATTGTCGC
CGAAGCCATGGTGGCCAAGCTCCGGGTCCGCTGCAGCAACAGCAACAGAA
GGGAGGGCGAGCAGGGTATGATGAGGAAGGGGGGGAAATACGAGGAGGAA
GGAGGGGATGGAGGGAGGGAGGGAGAGAGGGAGGGGCCGGCATGTGAGTG
GGTGGGGAGGTTGGAAGAGCTTGAGAGGCATCGACGATCAGATTGTGCGT
ATGAGGTCATTGCGTGTCCGTATCATCATCATCATCATCATCGTCAGCAG
CAGCAGGAGCCTCGAGAGGAGCGAGCGGAGCAAGTAGAGGAAGGGGAAAA
GGAAGAGAGCTACAGTAGCAACAGCCAGAGCAGCAGCAACAGCAGCAGCA
CGAGGAAGGACAGCAAGCGTCAGACGTCCGAGGCGAAGAAGACCTGTGCC
ATCTCCACCGCTACCACCACCGCTAGAAACTGCAACAGCAGTGAAAATGG
CTGCTCCTATCAGGCTTGGCGCTCGCGTATCGAAAAGGAACACGTCTCCC
AGTGCCCCCATCGCCCCATCTCCTGCTCCCTTGCCTGCGGGTGGACGGGA
AAGAAGATGGAGGAAGCCCGTCACCAGGGCACAAGCTGCCCACGTGTCAT
CCTGTTTTGTCAGAATAAGGGGTGCCCGGCCTCTTTTGTACGGGCGGGGA
GTGGCGCCCACTACGACGCAGAGTGTCCGTTCCAGCCGGTGCCCTGTGTG
TTTGCCCCGCACGGCTGTCTCGTGCGGCCGCTCAGGCAGGCCCAAGCGCA
GCATCAGGCGGAGGCAGCGGTAGAGCACGCCAGCTTGACGGCCAGTAAAA
TCTCGAGTCTAGAGGCGGGCATCGAGAGAATGTGCGGGCAATTCGAGGAC
TTGCGGCAACGGTAAGAAACGCCCTCCCTCCCTCCCTCCCCTTGTCCCTC
ACACTCGGGCACTACGAGAGACTCCCAGGGGCGGAATCGTCTCTACTGTG
TCCACCCCGCCCAACCAGACAAGCTACTCACTCAGTCACCCACCCCTCCC
TCCTTTTATTCCCCTCCCTCCCCTTCCCCTAGCGTGGAGCACTCGGAGAA
GGCCACGAGGGAAACTATCGTGTCGCTGGTTGCCAACCCCCACCCGGGCG
TCTACCTCATCCTGTACTCCCGCATTCGCAGGCAGTGGAGCCAAGGCGGA
GGAATCGGTCTGCTGGGAGGGAGGGGGGGAGGGAGGGAGGGAACAGACGA
CAGATTGAGTCAAGCGATCGACCTGTTCTTGGAGGGCGTGGTATCGGATG
CTATCCCTTCCTCCCCCGCTGCCTCGACCCCCTCATTCTTGCCGCGGTTA
GAAGAAGGGAGGGAGGGAGGGGGAGAGGGAGGGGGGGAAGGAGGGGGGAA
GGACGGGTTGATGGATATGGCAGCAGCGGCAGCGGTGGCAGCAGCGGCTT
TGGCAGAGAAGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGG
GTTGGCGGGAGGGATGAAGGGCCGGCATTGGATGCGGTTAAGTTCTTTGA
AAGGCTGCAGCAAGGAGGGGCGGGGAGGAGTCTATTCCAGACTGTGAATG
GAGGTTTAAGGGGAGGAGGGGTAAGAGGAGGAGGAGGAAGGGGAGGAGGA
AGGGGAGGAGAAAGGGAGGGAGGGGGAGGTCGAGGGAGGGGAAGGAGGGC
AGGCCATCGACAGCATGGTGGTGAGGGCGAAGTGACGTACATCGAGGAGG
TGGAAGGATGAGGGGAGAATGACAAGGAACAAAGGAAGGGTGAGTGGGCA
GGAGGTATTGAAGTCTCTATTATGTAAGTAGGTGCGGGTGAAATGGCGGA
TGCGCTGACAAGCAGAAGGGGAGGAGGATGAAAGCAAGTGAAAGACAGTA
AATAAAGTGACGACGAGAGAGAAAGTGAGAGGGTAAGAGATATGAACTTA
TATTATTTTAAACAATGACGACAAGAGCCACAGAAAGAAAGAATGTGTTG
AGCCATTA back to topCoding sequence (CDS) from alignment at scaffold_23:319358..321815- >mRNA_8307 ID=mRNA_8307|Name=jgi.p|Nanoce1779_2|189560|organism=Nannochloropsis oceanica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_23:319358..321815- (Nannochloropsis oceanica)
GGCGAAGTGACGTACATCGAGGAGGTGGAAGGATGACGTGGAGCACTCGG
AGAAGGCCACGAGGGAAACTATCGTGTCGCTGGTTGCCAACCCCCACCCG
GGCGGTTGAATCATCCCCCACCATCTAAAGCCGGTCCTTCCTCCTCCAAG
ACGAAAAAGAAAGCTGCTCACTGTCCTGGCTGCATGCTGCCTCTGGGCCC
AAAAGTCAGGAACATTGTCGCCGAAGCCATGGTGGCCAAGCTCCGGGTCC
GCTGCAGCAACAGCAACAGAAGGGAGGGCGAGCAGGGTATGATGAGGAAG
GGGGGGAAATACGAGGAGGAAGGAGGGGATGGAGGGAGGGAGGGAGAGAG
GGAGGGGCCGGCATGTGAGTGGGTGGGGAGGTTGGAAGAGCTTGAGAGGC
ATCGACGATCAGATTGTGCGTATGAGGTCATTGCGTGTCCGTATCATCAT
CATCATCATCATCGTCAGCAGCAGCAGGAGCCTCGAGAGGAGCGAGCGGA
GCAAGTAGAGGAAGGGGAAAAGGAAGAGAGCTACAGTAGCAACAGCCAGA
GCAGCAGCAACAGCAGCAGCACGAGGAAGGACAGCAAGCGTCAGACGTCC
GAGGCGAAGAAGACCTGTGCCATCTCCACCGCTACCACCACCGCTAGAAA
CTGCAACAGCAGTGAAAATGGCTGCTCCTATCAGGCTTGGCGCTCGCGTA
TCGAAAAGGAACACGTCTCCCAGTGCCCCCATCGCCCCATCTCCTGCTCC
CTTGCCTGCGGGTGGACGGGAAAGAAGATGGAGGAAGCCCGTCACCAGGG
CACAAGCTGCCCACGTGTCATCCTGTTTTGTCAGAATAAGGGGTGCCCGG
CCTCTTTTGTACGGGCGGGGAGTGGCGCCCACTACGACGCAGAGTGTCCG
TTCCAGCCGGTGCCCTGTGTGTTTGCCCCGCACGGCTGTCTCGTGCGGCC
GCTCAGGCAGGCCCAAGCGCAGCATCAGGCGGAGGCAGCGGTAGAGCACG
CCAGCTTGACGGCCAGTAAAATCTCGAGTCTAGAGGCGGGCATCGAGAGA
ATGTGCGGGCAATTCGAGGACTTGCGGCAACGATGGGCATTCAAGCAATT
TTCGTCGACCCAGTAGAGGACGAGTTGCAATGTCCTATCTGCCATCTGGT
ATTGGATAAGCCAGTCTCTCACTGTAGTCAAGGGCACACTTTTTGTCAGA
CCTGCATTCAAGCCTGGCGAAGTGACGTACATCGAGGAGGTGGAAGGATG
ACGTGGAGCACTCGGAGAAGGCCACGAGGGAAACTATCGTGTCGCTGGTT
GCCAACCCCCACCCGGGCGGTTGAATCATCCCCCACCATCTAAAGCCGGT
CCTTCCTCCTCCAAGACGAAAAAGAAAGCTGCTCACTGTCCTGGCTGCAT
GCTGCCTCTGGGCCCAAAAGTCAGGAACATTGTCGCCGAAGCCATGGTGG
CCAAGCTCCGGGTCCGCTGCAGCAACAGCAACAGAAGGGAGGGCGAGCAG
GGTATGATGAGGAAGGGGGGGAAATACGAGGAGGAAGGAGGGGATGGAGG
GAGGGAGGGAGAGAGGGAGGGGCCGGCATGTGAGTGGGTGGGGAGGTTGG
AAGAGCTTGAGAGGCATCGACGATCAGATTGTGCGTATGAGGTCATTGCG
TGTCCGTATCATCATCATCATCATCATCGTCAGCAGCAGCAGGAGCCTCG
AGAGGAGCGAGCGGAGCAAGTAGAGGAAGGGGAAAAGGAAGAGAGCTACA
GTAGCAACAGCCAGAGCAGCAGCAACAGCAGCAGCACGAGGAAGGACAGC
AAGCGTCAGACGTCCGAGGCGAAGAAGACCTGTGCCATCTCCACCGCTAC
CACCACCGCTAGAAACTGCAACAGCAGTGAAAATGGCTGCTCCTATCAGG
CTTGGCGCTCGCGTATCGAAAAGGAACACGTCTCCCAGTGCCCCCATCGC
CCCATCTCCTGCTCCCTTGCCTGCGGGTGGACGGGAAAGAAGATGGAGGA
AGCCCGTCACCAGGGCACAAGCTGCCCACGTGTCATCCTGTTTTGTCAGA
ATAAGGGGTGCCCGGCCTCTTTTGTACGGGCGGGGAGTGGCGCCCACTAC
GACGCAGAGTGTCCGTTCCAGCCGGTGCCCTGTGTGTTTGCCCCGCACGG
CTGTCTCGTGCGGCCGCTCAGGCAGGCCCAAGCGCAGCATCAGGCGGAGG
CAGCGGTAGAGCACGCCAGCTTGACGGCCAGTAAAATCTCGAGTCTAGAG
GCGGGCATCGAGAGAATGTGCGGGCAATTCGAGGACTTGCGGCAACGATG
GGCATTCAAGCAATTTTCGTCGACCCAGTAGAGGACGAGTTGCAATGTCC
TATCTGCCATCTGGTATTGGATAAGCCAGTCTCTCACTGTAGTCAAGGGC
ACACTTTTTGTCAGACCTGCATTCAAGCCTGGCGAAGTGACGTACATCGA
GGAGGTGGAAGGATGACGTGGAGCACTCGGAGAAGGCCACGAGGGAAACT
ATCGTGTCGCTGGTTGCCAACCCCCACCCGGGCGGTTGAATCATCCCCCA
CCATCTAAAGCCGGTCCTTCCTCCTCCAAGACGAAAAAGAAAGCTGCTCA
CTGTCCTGGCTGCATGCTGCCTCTGGGCCCAAAAGTCAGGAACATTGTCG
CCGAAGCCATGGTGGCCAAGCTCCGGGTCCGCTGCAGCAACAGCAACAGA
AGGGAGGGCGAGCAGGGTATGATGAGGAAGGGGGGGAAATACGAGGAGGA
AGGAGGGGATGGAGGGAGGGAGGGAGAGAGGGAGGGGCCGGCATGTGAGT
GGGTGGGGAGGTTGGAAGAGCTTGAGAGGCATCGACGATCAGATTGTGCG
TATGAGGTCATTGCGTGTCCGTATCATCATCATCATCATCATCGTCAGCA
GCAGCAGGAGCCTCGAGAGGAGCGAGCGGAGCAAGTAGAGGAAGGGGAAA
AGGAAGAGAGCTACAGTAGCAACAGCCAGAGCAGCAGCAACAGCAGCAGC
ACGAGGAAGGACAGCAAGCGTCAGACGTCCGAGGCGAAGAAGACCTGTGC
CATCTCCACCGCTACCACCACCGCTAGAAACTGCAACAGCAGTGAAAATG
GCTGCTCCTATCAGGCTTGGCGCTCGCGTATCGAAAAGGAACACGTCTCC
CAGTGCCCCCATCGCCCCATCTCCTGCTCCCTTGCCTGCGGGTGGACGGG
AAAGAAGATGGAGGAAGCCCGTCACCAGGGCACAAGCTGCCCACGTGTCA
TCCTGTTTTGTCAGAATAAGGGGTGCCCGGCCTCTTTTGTACGGGCGGGG
AGTGGCGCCCACTACGACGCAGAGTGTCCGTTCCAGCCGGTGCCCTGTGT
GTTTGCCCCGCACGGCTGTCTCGTGCGGCCGCTCAGGCAGGCCCAAGCGC
AGCATCAGGCGGAGGCAGCGGTAGAGCACGCCAGCTTGACGGCCAGTAAA
ATCTCGAGTCTAGAGGCGGGCATCGAGAGAATGTGCGGGCAATTCGAGGA
CTTGCGGCAACGATGGGCATTCAAGCAATTTTCGTCGACCCAGTAGAGGA
CGAGTTGCAATGTCCTATCTGCCATCTGGTATTGGATAAGCCAGTCTCTC
ACTGTAGTCAAGGGCACACTTTTTGTCAGACCTGCATTCAAGCCTGGCGA
AGTGACGTACATCGAGGAGGTGGAAGGATGACGTGGAGCACTCGGAGAAG
GCCACGAGGGAAACTATCGTGTCGCTGGTTGCCAACCCCCACCCGGGCGG
TTGAATCATCCCCCACCATCTAAAGCCGGTCCTTCCTCCTCCAAGACGAA
AAAGAAAGCTGCTCACTGTCCTGGCTGCATGCTGCCTCTGGGCCCAAAAG
TCAGGAACATTGTCGCCGAAGCCATGGTGGCCAAGCTCCGGGTCCGCTGC
AGCAACAGCAACAGAAGGGAGGGCGAGCAGGGTATGATGAGGAAGGGGGG
GAAATACGAGGAGGAAGGAGGGGATGGAGGGAGGGAGGGAGAGAGGGAGG
GGCCGGCATGTGAGTGGGTGGGGAGGTTGGAAGAGCTTGAGAGGCATCGA
CGATCAGATTGTGCGTATGAGGTCATTGCGTGTCCGTATCATCATCATCA
TCATCATCGTCAGCAGCAGCAGGAGCCTCGAGAGGAGCGAGCGGAGCAAG
TAGAGGAAGGGGAAAAGGAAGAGAGCTACAGTAGCAACAGCCAGAGCAGC
AGCAACAGCAGCAGCACGAGGAAGGACAGCAAGCGTCAGACGTCCGAGGC
GAAGAAGACCTGTGCCATCTCCACCGCTACCACCACCGCTAGAAACTGCA
ACAGCAGTGAAAATGGCTGCTCCTATCAGGCTTGGCGCTCGCGTATCGAA
AAGGAACACGTCTCCCAGTGCCCCCATCGCCCCATCTCCTGCTCCCTTGC
CTGCGGGTGGACGGGAAAGAAGATGGAGGAAGCCCGTCACCAGGGCACAA
GCTGCCCACGTGTCATCCTGTTTTGTCAGAATAAGGGGTGCCCGGCCTCT
TTTGTACGGGCGGGGAGTGGCGCCCACTACGACGCAGAGTGTCCGTTCCA
GCCGGTGCCCTGTGTGTTTGCCCCGCACGGCTGTCTCGTGCGGCCGCTCA
GGCAGGCCCAAGCGCAGCATCAGGCGGAGGCAGCGGTAGAGCACGCCAGC
TTGACGGCCAGTAAAATCTCGAGTCTAGAGGCGGGCATCGAGAGAATGTG
CGGGCAATTCGAGGACTTGCGGCAACGATGGGCATTCAAGCAATTTTCGT
CGACCCAGTAGAGGACGAGTTGCAATGTCCTATCTGCCATCTGGTATTGG
ATAAGCCAGTCTCTCACTGTAGTCAAGGGCACACTTTTTGTCAGACCTGC
ATTCAAGCCT back to top
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